Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 5 cut(s) | 72, 347, 678, 986, 1050 |
| AclWI | GGATC | 4 cut(s) | 86, 720, 726, 733 |
| AcsI | RAATTY | 3 cut(s) | 34, 132, 433 |
| AcuI | CTGAAG | 3 cut(s) | 68, 732, 783 |
| AfaI | GTAC | 2 cut(s) | 42, 874 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 78, 112, 210, 402, 511, 623, 882 |
| AgsI | TTSAA | 5 cut(s) | 26, 101, 145, 634, 830 |
| AjiI | CACGTC | 1 cut(s) | 1026 |
| AjnI | CCWGG | 4 cut(s) | 203, 383, 395, 622 |
| AluBI | AGCT | 7 cut(s) | 271, 467, 542, 674, 820, 844, 1083 |
| AluI | AGCT | 7 cut(s) | 271, 467, 542, 674, 820, 844, 1083 |
| Alw26I | GTCTC | 4 cut(s) | 505, 546, 654, 774 |
| AlwI | GGATC | 4 cut(s) | 86, 720, 726, 733 |
| AoxI | GGCC | 2 cut(s) | 784, 942 |
| ApeKI | GCWGC | 4 cut(s) | 524, 527, 674, 857 |
| ApoI | RAATTY | 3 cut(s) | 34, 132, 433 |
| AspLEI | GCGC | 1 cut(s) | 773 |
| BamHI | GGATCC | 1 cut(s) | 725 |
| BauI | CACGAG | 1 cut(s) | 960 |
| BbsI | GAAGAC | 2 cut(s) | 297, 298 |
| BbvI | GCAGC | 4 cut(s) | 511, 514, 661, 844 |
| BccI | CCATC | 2 cut(s) | 114, 641 |
| BceAI | ACGGC | 2 cut(s) | 799, 1027 |
| BciT130I | CCWGG | 4 cut(s) | 205, 385, 397, 624 |
| BciVI | GTATCC | 1 cut(s) | 565 |
| BclI | TGATCA | 1 cut(s) | 846 |
| BcoDI | GTCTC | 4 cut(s) | 505, 546, 654, 774 |
| BfaI | CTAG | 1 cut(s) | 237 |
| BfmI | CTRYAG | 1 cut(s) | 274 |
| BfoI | RGCGCY | 1 cut(s) | 774 |
| BfuI | GTATCC | 1 cut(s) | 565 |
| BisI | GCNGC | 5 cut(s) | 525, 528, 675, 678, 858 |
| BlsI | GCNGC | 5 cut(s) | 526, 529, 676, 679, 859 |
| BmcAI | AGTACT | 1 cut(s) | 42 |
| Bme1390I | CCNGG | 4 cut(s) | 205, 385, 397, 624 |
| BmgBI | CACGTC | 1 cut(s) | 1026 |
| BmiI | GGNNCC | 3 cut(s) | 727, 742, 917 |
| BmrFI | CCNGG | 4 cut(s) | 205, 385, 397, 624 |
| BmsI | GCATC | 4 cut(s) | 370, 694, 844, 973 |
| BpiI | GAAGAC | 2 cut(s) | 297, 298 |
| BpmI | CTGGAG | 4 cut(s) | 351, 606, 907, 1069 |
| BpuEI | CTTGAG | 1 cut(s) | 791 |
| BsaBI | GATNNNNATC | 1 cut(s) | 730 |
| BsaJI | CCNNGG | 3 cut(s) | 111, 204, 881 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 601, 631, 1067, 1097 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 78, 112, 210, 402, 511, 623, 882 |
| Bse1I | ACTGG | 2 cut(s) | 924, 1086 |
| Bse3DI | GCAATG | 1 cut(s) | 756 |
| Bse8I | GATNNNNATC | 1 cut(s) | 730 |
| BseBI | CCWGG | 4 cut(s) | 205, 385, 397, 624 |
| BseDI | CCNNGG | 3 cut(s) | 111, 204, 881 |
| BseGI | GGATG | 3 cut(s) | 106, 292, 948 |
| BseJI | GATNNNNATC | 1 cut(s) | 730 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 78, 112, 210, 402, 511, 623, 882 |
| BseMI | GCAATG | 1 cut(s) | 756 |
| BseMII | CTCAG | 4 cut(s) | 420, 598, 666, 904 |
| BseNI | ACTGG | 2 cut(s) | 924, 1086 |
| BseRI | GAGGAG | 5 cut(s) | 603, 606, 609, 733, 950 |
| BseXI | GCAGC | 4 cut(s) | 511, 514, 661, 844 |
| BseYI | CCCAGC | 1 cut(s) | 280 |
| BshFI | GGCC | 2 cut(s) | 786, 944 |
| BsiSI | CCGG | 1 cut(s) | 723 |
| BslFI | GGGAC | 2 cut(s) | 303, 848 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 78, 112, 210, 402, 511, 623, 882 |
| BsmAI | GTCTC | 4 cut(s) | 505, 546, 654, 774 |
| BsmBI | CGTCTC | 1 cut(s) | 774 |
| BsmFI | GGGAC | 2 cut(s) | 303, 848 |
| BsmI | GAATGC | 1 cut(s) | 349 |
| BsnI | GGCC | 2 cut(s) | 786, 944 |
| Bsp143I | GATC | 5 cut(s) | 91, 697, 725, 731, 846 |
| BspACI | CCGC | 5 cut(s) | 72, 347, 678, 986, 1050 |
| BspANI | GGCC | 2 cut(s) | 786, 944 |
| BspCNI | CTCAG | 4 cut(s) | 421, 597, 665, 903 |
| BspHI | TCATGA | 2 cut(s) | 123, 700 |
| BspLI | GGNNCC | 3 cut(s) | 727, 742, 917 |
| BspPI | GGATC | 4 cut(s) | 86, 720, 726, 733 |
| BsrDI | GCAATG | 1 cut(s) | 756 |
| BsrI | ACTGG | 2 cut(s) | 924, 1086 |
| BssECI | CCNNGG | 3 cut(s) | 111, 204, 881 |
| BssMI | GATC | 5 cut(s) | 91, 697, 725, 731, 846 |
| BssSI | CACGAG | 1 cut(s) | 960 |
| BssT1I | CCWWGG | 2 cut(s) | 111, 881 |
| Bst2BI | CACGAG | 1 cut(s) | 960 |
| Bst2UI | CCWGG | 4 cut(s) | 205, 385, 397, 624 |
| Bst4CI | ACNGT | 3 cut(s) | 262, 499, 877 |
| Bst6I | CTCTTC | 1 cut(s) | 751 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1039 |
| BstC8I | GCNNGC | 1 cut(s) | 269 |
| BstDEI | CTNAG | 5 cut(s) | 429, 584, 652, 776, 890 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 400, 621 |
| BstF5I | GGATG | 3 cut(s) | 106, 292, 948 |
| BstH2I | RGCGCY | 1 cut(s) | 774 |
| BstHHI | GCGC | 1 cut(s) | 773 |
| BstKTI | GATC | 5 cut(s) | 94, 700, 728, 734, 849 |
| BstMAI | GTCTC | 4 cut(s) | 505, 546, 654, 774 |
| BstMBI | GATC | 5 cut(s) | 91, 697, 725, 731, 846 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 277, 1039, 1058 |
| BstNI | CCWGG | 4 cut(s) | 205, 385, 397, 624 |
| BstSCI | CCNGG | 4 cut(s) | 203, 383, 395, 622 |
| BstSFI | CTRYAG | 1 cut(s) | 274 |
| BstV1I | GCAGC | 4 cut(s) | 511, 514, 661, 844 |
| BstV2I | GAAGAC | 2 cut(s) | 297, 298 |
| BstX2I | RGATCY | 2 cut(s) | 725, 731 |
| BstYI | RGATCY | 2 cut(s) | 725, 731 |
| BsuI | GTATCC | 1 cut(s) | 565 |
| BsuRI | GGCC | 2 cut(s) | 786, 944 |
| BtrI | CACGTC | 1 cut(s) | 1026 |
| BtsCI | GGATG | 3 cut(s) | 106, 292, 948 |
| BtsIMutI | CAGTG | 2 cut(s) | 258, 426 |
| Cac8I | GCNNGC | 1 cut(s) | 269 |
| CciI | TCATGA | 2 cut(s) | 123, 700 |
| CfoI | GCGC | 1 cut(s) | 773 |
| Csp6I | GTAC | 2 cut(s) | 41, 873 |
| CviAII | CATG | 5 cut(s) | 124, 302, 521, 701, 998 |
| CviQI | GTAC | 2 cut(s) | 41, 873 |
| DdeI | CTNAG | 5 cut(s) | 429, 584, 652, 776, 890 |
| DpnI | GATC | 5 cut(s) | 93, 699, 727, 733, 848 |
| DpnII | GATC | 5 cut(s) | 91, 697, 725, 731, 846 |
| DraI | TTTAAA | 2 cut(s) | 175, 904 |
| Eam1104I | CTCTTC | 1 cut(s) | 751 |
| EarI | CTCTTC | 1 cut(s) | 751 |
| Eco130I | CCWWGG | 2 cut(s) | 111, 881 |
| Eco57I | CTGAAG | 3 cut(s) | 68, 732, 783 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 400, 621 |
| EcoRII | CCWGG | 4 cut(s) | 203, 383, 395, 622 |
| EcoT14I | CCWWGG | 2 cut(s) | 111, 881 |
| ErhI | CCWWGG | 2 cut(s) | 111, 881 |
| Esp3I | CGTCTC | 1 cut(s) | 774 |
| FaeI | CATG | 5 cut(s) | 127, 305, 524, 704, 1001 |
| FaqI | GGGAC | 2 cut(s) | 303, 848 |
| FatI | CATG | 5 cut(s) | 123, 301, 520, 700, 997 |
| FauI | CCCGC | 1 cut(s) | 340 |
| FbaI | TGATCA | 1 cut(s) | 846 |
| Fnu4HI | GCNGC | 5 cut(s) | 525, 528, 675, 678, 858 |
| FokI | GGATG | 3 cut(s) | 93, 299, 935 |
| Fsp4HI | GCNGC | 5 cut(s) | 525, 528, 675, 678, 858 |
| FspBI | CTAG | 1 cut(s) | 237 |
| GlaI | GCGC | 1 cut(s) | 772 |
| GluI | GCNGC | 5 cut(s) | 525, 528, 675, 678, 858 |
| GsaI | CCCAGC | 1 cut(s) | 284 |
| GsuI | CTGGAG | 4 cut(s) | 351, 606, 907, 1069 |
| HaeII | RGCGCY | 1 cut(s) | 774 |
| HaeIII | GGCC | 2 cut(s) | 786, 944 |
| HapII | CCGG | 1 cut(s) | 723 |
| HhaI | GCGC | 1 cut(s) | 773 |
| Hin1II | CATG | 5 cut(s) | 127, 305, 524, 704, 1001 |
| Hin6I | GCGC | 1 cut(s) | 771 |
| HinP1I | GCGC | 1 cut(s) | 771 |
| HinfI | GANTC | 2 cut(s) | 610, 836 |
| HpaII | CCGG | 1 cut(s) | 723 |
| Hpy166II | GTNNAC | 2 cut(s) | 424, 609 |
| Hpy188I | TCNGA | 5 cut(s) | 87, 488, 551, 659, 893 |
| Hpy188III | TCNNGA | 7 cut(s) | 124, 330, 403, 536, 701, 729, 962 |
| Hpy8I | GTNNAC | 2 cut(s) | 424, 609 |
| Hpy99I | CGWCG | 2 cut(s) | 1024, 1027 |
| HpyAV | CCTTC | 5 cut(s) | 204, 400, 758, 824, 955 |
| HpyCH4III | ACNGT | 3 cut(s) | 262, 499, 877 |
| HpyCH4IV | ACGT | 1 cut(s) | 1025 |
| HpyCH4V | TGCA | 2 cut(s) | 707, 813 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 277, 1039, 1058 |
| HpyF3I | CTNAG | 5 cut(s) | 429, 584, 652, 776, 890 |
| HpySE526I | ACGT | 1 cut(s) | 1025 |
| Hsp92II | CATG | 5 cut(s) | 127, 305, 524, 704, 1001 |
| HspAI | GCGC | 1 cut(s) | 771 |
| Ksp22I | TGATCA | 1 cut(s) | 846 |
| Kzo9I | GATC | 5 cut(s) | 91, 697, 725, 731, 846 |
| LmnI | GCTCC | 3 cut(s) | 746, 768, 1088 |
| Lsp1109I | GCAGC | 4 cut(s) | 511, 514, 661, 844 |
| LweI | GCATC | 4 cut(s) | 370, 694, 844, 973 |
| MaeI | CTAG | 1 cut(s) | 237 |
| MaeII | ACGT | 1 cut(s) | 1025 |
| MaeIII | GTNAC | 2 cut(s) | 587, 988 |
| MalI | GATC | 5 cut(s) | 93, 699, 727, 733, 848 |
| MboI | GATC | 5 cut(s) | 91, 697, 725, 731, 846 |
| MboII | GAAGA | 9 cut(s) | 38, 298, 301, 302, 363, 466, 738, 794, 999 |
| MflI | RGATCY | 2 cut(s) | 725, 731 |
| MluCI | AATT | 7 cut(s) | 34, 132, 140, 433, 868, 929, 1066 |
| MlyI | GAGTC | 2 cut(s) | 604, 830 |
| MmeI | TCCRAC | 1 cut(s) | 1037 |
| MseI | TTAA | 8 cut(s) | 45, 66, 174, 215, 296, 354, 903, 1065 |
| MspI | CCGG | 1 cut(s) | 723 |
| MspR9I | CCNGG | 4 cut(s) | 205, 385, 397, 624 |
| Mva1269I | GAATGC | 1 cut(s) | 349 |
| MvaI | CCWGG | 4 cut(s) | 205, 385, 397, 624 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 277, 1039, 1058 |
| NdeII | GATC | 5 cut(s) | 91, 697, 725, 731, 846 |
| NlaIII | CATG | 5 cut(s) | 127, 305, 524, 704, 1001 |
| NlaIV | GGNNCC | 3 cut(s) | 727, 742, 917 |
| NmuCI | GTSAC | 1 cut(s) | 587 |
| PagI | TCATGA | 2 cut(s) | 123, 700 |
| PctI | GAATGC | 1 cut(s) | 349 |
| PfoI | TCCNGGA | 1 cut(s) | 622 |
| PkrI | GCNGC | 5 cut(s) | 526, 529, 676, 679, 859 |
| PleI | GAGTC | 2 cut(s) | 604, 830 |
| PpsI | GAGTC | 2 cut(s) | 604, 830 |
| Psp6I | CCWGG | 4 cut(s) | 203, 383, 395, 622 |
| PspFI | CCCAGC | 1 cut(s) | 280 |
| PspGI | CCWGG | 4 cut(s) | 203, 383, 395, 622 |
| PspN4I | GGNNCC | 3 cut(s) | 727, 742, 917 |
| PsuI | RGATCY | 2 cut(s) | 725, 731 |
| RsaI | GTAC | 2 cut(s) | 42, 874 |
| RsaNI | GTAC | 2 cut(s) | 41, 873 |
| SaqAI | TTAA | 8 cut(s) | 45, 66, 174, 215, 296, 354, 903, 1065 |
| SatI | GCNGC | 5 cut(s) | 525, 528, 675, 678, 858 |
| Sau3AI | GATC | 5 cut(s) | 91, 697, 725, 731, 846 |
| ScaI | AGTACT | 1 cut(s) | 42 |
| SchI | GAGTC | 2 cut(s) | 604, 830 |
| ScrFI | CCNGG | 4 cut(s) | 205, 385, 397, 624 |
| SfaNI | GCATC | 4 cut(s) | 370, 694, 844, 973 |
| SfcI | CTRYAG | 1 cut(s) | 274 |
| SmlI | CTYRAG | 1 cut(s) | 806 |
| SmoI | CTYRAG | 1 cut(s) | 806 |
| Sse9I | AATT | 7 cut(s) | 34, 132, 140, 433, 868, 929, 1066 |
| SsiI | CCGC | 5 cut(s) | 72, 347, 678, 986, 1050 |
| SspI | AATATT | 1 cut(s) | 148 |
| SspMI | CTAG | 1 cut(s) | 237 |
| StyD4I | CCNGG | 4 cut(s) | 203, 383, 395, 622 |
| StyI | CCWWGG | 2 cut(s) | 111, 881 |
| TaaI | ACNGT | 3 cut(s) | 262, 499, 877 |
| TaiI | ACGT | 1 cut(s) | 1028 |
| TaqI | TCGA | 4 cut(s) | 62, 469, 645, 933 |
| TasI | AATT | 7 cut(s) | 34, 132, 140, 433, 868, 929, 1066 |
| TatI | WGTACW | 1 cut(s) | 40 |
| TauI | GCSGC | 1 cut(s) | 680 |
| Tru1I | TTAA | 8 cut(s) | 45, 66, 174, 215, 296, 354, 903, 1065 |
| Tru9I | TTAA | 8 cut(s) | 45, 66, 174, 215, 296, 354, 903, 1065 |
| TscAI | CASTG | 2 cut(s) | 265, 433 |
| TseFI | GTSAC | 1 cut(s) | 587 |
| TseI | GCWGC | 4 cut(s) | 524, 527, 674, 857 |
| Tsp45I | GTSAC | 1 cut(s) | 587 |
| TspDTI | ATGAA | 5 cut(s) | 140, 144, 303, 509, 937 |
| TspRI | CASTG | 2 cut(s) | 265, 433 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 400, 621 |
| XapI | RAATTY | 3 cut(s) | 34, 132, 433 |
| XspI | CTAG | 1 cut(s) | 237 |
| ZrmI | AGTACT | 1 cut(s) | 42 |