ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 37 |
| AcoI | YGGCCR | 1 cut(s) | 588 |
| AcsI | RAATTY | 2 cut(s) | 98, 519 |
| AcuI | CTGAAG | 2 cut(s) | 42, 594 |
| AfaI | GTAC | 1 cut(s) | 646 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 597, 638 |
| AgsI | TTSAA | 2 cut(s) | 161, 386 |
| AleI | CACNNNNGTG | 1 cut(s) | 307 |
| AluBI | AGCT | 2 cut(s) | 20, 26 |
| AluI | AGCT | 2 cut(s) | 20, 26 |
| Alw26I | GTCTC | 1 cut(s) | 265 |
| AoxI | GGCC | 1 cut(s) | 588 |
| ApeKI | GCWGC | 1 cut(s) | 428 |
| ApoI | RAATTY | 2 cut(s) | 98, 519 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 579 |
| AsuHPI | GGTGA | 1 cut(s) | 506 |
| AsuII | TTCGAA | 1 cut(s) | 626 |
| BalI | TGGCCA | 1 cut(s) | 590 |
| BbsI | GAAGAC | 1 cut(s) | 660 |
| BbvI | GCAGC | 1 cut(s) | 415 |
| BcoDI | GTCTC | 1 cut(s) | 265 |
| BfaI | CTAG | 4 cut(s) | 51, 147, 597, 680 |
| BisI | GCNGC | 1 cut(s) | 429 |
| BlsI | GCNGC | 1 cut(s) | 430 |
| BmcAI | AGTACT | 1 cut(s) | 646 |
| BmiI | GGNNCC | 1 cut(s) | 536 |
| BoxI | GACNNNNGTC | 1 cut(s) | 277 |
| BpiI | GAAGAC | 1 cut(s) | 660 |
| Bpu14I | TTCGAA | 1 cut(s) | 626 |
| BpuEI | CTTGAG | 1 cut(s) | 287 |
| BsaJI | CCNNGG | 1 cut(s) | 222 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 326, 356 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 597, 638 |
| BseDI | CCNNGG | 1 cut(s) | 222 |
| BseGI | GGATG | 1 cut(s) | 207 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 597, 638 |
| BseXI | GCAGC | 1 cut(s) | 415 |
| BshFI | GGCC | 1 cut(s) | 590 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 597, 638 |
| BsmAI | GTCTC | 1 cut(s) | 265 |
| BsnI | GGCC | 1 cut(s) | 590 |
| Bsp119I | TTCGAA | 1 cut(s) | 626 |
| BspANI | GGCC | 1 cut(s) | 590 |
| BspHI | TCATGA | 1 cut(s) | 124 |
| BspLI | GGNNCC | 1 cut(s) | 536 |
| BspQI | GCTCTTC | 1 cut(s) | 328 |
| BspT104I | TTCGAA | 1 cut(s) | 626 |
| BssECI | CCNNGG | 1 cut(s) | 222 |
| BssNAI | GTATAC | 1 cut(s) | 38 |
| BssT1I | CCWWGG | 1 cut(s) | 222 |
| Bst1107I | GTATAC | 1 cut(s) | 38 |
| Bst4CI | ACNGT | 4 cut(s) | 106, 122, 539, 649 |
| Bst6I | CTCTTC | 2 cut(s) | 328, 678 |
| BstBI | TTCGAA | 1 cut(s) | 626 |
| BstC8I | GCNNGC | 1 cut(s) | 606 |
| BstDEI | CTNAG | 1 cut(s) | 405 |
| BstF5I | GGATG | 1 cut(s) | 207 |
| BstMAI | GTCTC | 1 cut(s) | 265 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 318 |
| BstNSI | RCATGY | 1 cut(s) | 608 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 277 |
| BstV1I | GCAGC | 1 cut(s) | 415 |
| BstV2I | GAAGAC | 1 cut(s) | 660 |
| BstZ17I | GTATAC | 1 cut(s) | 38 |
| BsuRI | GGCC | 1 cut(s) | 590 |
| BtsCI | GGATG | 1 cut(s) | 207 |
| BtsIMutI | CAGTG | 1 cut(s) | 174 |
| Cac8I | GCNNGC | 1 cut(s) | 606 |
| CciI | TCATGA | 1 cut(s) | 124 |
| CseI | GACGC | 1 cut(s) | 267 |
| Csp6I | GTAC | 1 cut(s) | 645 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 270, 305 |
| CviAII | CATG | 5 cut(s) | 125, 340, 425, 592, 605 |
| CviJI | RGCY | 3 cut(s) | 20, 26, 590 |
| CviKI_1 | RGCY | 3 cut(s) | 20, 26, 590 |
| CviQI | GTAC | 1 cut(s) | 645 |
| DdeI | CTNAG | 1 cut(s) | 405 |
| EaeI | YGGCCR | 1 cut(s) | 588 |
| Eam1104I | CTCTTC | 2 cut(s) | 328, 678 |
| EarI | CTCTTC | 2 cut(s) | 328, 678 |
| Eco130I | CCWWGG | 1 cut(s) | 222 |
| Eco57I | CTGAAG | 2 cut(s) | 42, 594 |
| EcoT14I | CCWWGG | 1 cut(s) | 222 |
| ErhI | CCWWGG | 1 cut(s) | 222 |
| FaeI | CATG | 5 cut(s) | 128, 343, 428, 595, 608 |
| FatI | CATG | 5 cut(s) | 124, 339, 424, 591, 604 |
| FblI | GTMKAC | 1 cut(s) | 37 |
| Fnu4HI | GCNGC | 1 cut(s) | 429 |
| FokI | GGATG | 1 cut(s) | 194 |
| Fsp4HI | GCNGC | 1 cut(s) | 429 |
| FspBI | CTAG | 4 cut(s) | 51, 147, 597, 680 |
| GluI | GCNGC | 1 cut(s) | 429 |
| HaeIII | GGCC | 1 cut(s) | 590 |
| HgaI | GACGC | 1 cut(s) | 267 |
| Hin1II | CATG | 5 cut(s) | 128, 343, 428, 595, 608 |
| HincII | GTYRAC | 2 cut(s) | 61, 178 |
| HindII | GTYRAC | 2 cut(s) | 61, 178 |
| HinfI | GANTC | 1 cut(s) | 335 |
| HpaI | GTTAAC | 1 cut(s) | 178 |
| HphI | GGTGA | 1 cut(s) | 506 |
| Hpy166II | GTNNAC | 3 cut(s) | 38, 61, 178 |
| Hpy188I | TCNGA | 3 cut(s) | 328, 543, 574 |
| Hpy188III | TCNNGA | 4 cut(s) | 51, 125, 147, 266 |
| Hpy8I | GTNNAC | 3 cut(s) | 38, 61, 178 |
| HpyAV | CCTTC | 2 cut(s) | 193, 520 |
| HpyCH4III | ACNGT | 4 cut(s) | 106, 122, 539, 649 |
| HpyCH4IV | ACGT | 2 cut(s) | 653, 661 |
| HpyCH4V | TGCA | 2 cut(s) | 473, 604 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 318 |
| HpyF3I | CTNAG | 1 cut(s) | 405 |
| HpySE526I | ACGT | 2 cut(s) | 653, 661 |
| Hsp92II | CATG | 5 cut(s) | 128, 343, 428, 595, 608 |
| KspAI | GTTAAC | 1 cut(s) | 178 |
| LguI | GCTCTTC | 1 cut(s) | 328 |
| LpnPI | CCDG | 1 cut(s) | 290 |
| Lsp1109I | GCAGC | 1 cut(s) | 415 |
| MaeI | CTAG | 4 cut(s) | 51, 147, 597, 680 |
| MaeII | ACGT | 2 cut(s) | 653, 661 |
| MaeIII | GTNAC | 5 cut(s) | 342, 413, 562, 649, 657 |
| MboII | GAAGA | 5 cut(s) | 199, 202, 315, 660, 665 |
| MlsI | TGGCCA | 1 cut(s) | 590 |
| MluCI | AATT | 5 cut(s) | 98, 214, 329, 519, 622 |
| MluNI | TGGCCA | 1 cut(s) | 590 |
| MlyI | GAGTC | 1 cut(s) | 344 |
| MmeI | TCCRAC | 1 cut(s) | 276 |
| MnlI | CCTC | 6 cut(s) | 7, 231, 271, 432, 642, 687 |
| Mox20I | TGGCCA | 1 cut(s) | 590 |
| MroXI | GAANNNNTTC | 1 cut(s) | 579 |
| MscI | TGGCCA | 1 cut(s) | 590 |
| MseI | TTAA | 3 cut(s) | 108, 177, 483 |
| MslI | CAYNNNNRTG | 1 cut(s) | 307 |
| Msp20I | TGGCCA | 1 cut(s) | 590 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 318 |
| NlaIII | CATG | 5 cut(s) | 128, 343, 428, 595, 608 |
| NlaIV | GGNNCC | 1 cut(s) | 536 |
| NmuCI | GTSAC | 3 cut(s) | 562, 649, 657 |
| NspI | RCATGY | 1 cut(s) | 608 |
| NspV | TTCGAA | 1 cut(s) | 626 |
| OliI | CACNNNNGTG | 1 cut(s) | 307 |
| PaeI | GCATGC | 1 cut(s) | 608 |
| PagI | TCATGA | 1 cut(s) | 124 |
| PciSI | GCTCTTC | 1 cut(s) | 328 |
| PdmI | GAANNNNTTC | 1 cut(s) | 579 |
| PflFI | GACNNNGTC | 1 cut(s) | 655 |
| PkrI | GCNGC | 1 cut(s) | 430 |
| PleI | GAGTC | 1 cut(s) | 343 |
| PpsI | GAGTC | 1 cut(s) | 343 |
| PshAI | GACNNNNGTC | 1 cut(s) | 277 |
| PspN4I | GGNNCC | 1 cut(s) | 536 |
| PsyI | GACNNNGTC | 1 cut(s) | 655 |
| RsaI | GTAC | 1 cut(s) | 646 |
| RsaNI | GTAC | 1 cut(s) | 645 |
| RseI | CAYNNNNRTG | 1 cut(s) | 307 |
| SapI | GCTCTTC | 1 cut(s) | 328 |
| SaqAI | TTAA | 3 cut(s) | 108, 177, 483 |
| SatI | GCNGC | 1 cut(s) | 429 |
| ScaI | AGTACT | 1 cut(s) | 646 |
| SchI | GAGTC | 1 cut(s) | 344 |
| SfuI | TTCGAA | 1 cut(s) | 626 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 307 |
| SmlI | CTYRAG | 1 cut(s) | 266 |
| SmoI | CTYRAG | 1 cut(s) | 266 |
| SphI | GCATGC | 1 cut(s) | 608 |
| Sse9I | AATT | 5 cut(s) | 98, 214, 329, 519, 622 |
| SspI | AATATT | 1 cut(s) | 253 |
| SspMI | CTAG | 4 cut(s) | 51, 147, 597, 680 |
| StyI | CCWWGG | 1 cut(s) | 222 |
| TaaI | ACNGT | 4 cut(s) | 106, 122, 539, 649 |
| TaiI | ACGT | 2 cut(s) | 656, 664 |
| TaqI | TCGA | 1 cut(s) | 626 |
| TasI | AATT | 5 cut(s) | 98, 214, 329, 519, 622 |
| TatI | WGTACW | 1 cut(s) | 644 |
| Tru1I | TTAA | 3 cut(s) | 108, 177, 483 |
| Tru9I | TTAA | 3 cut(s) | 108, 177, 483 |
| TscAI | CASTG | 1 cut(s) | 174 |
| TseFI | GTSAC | 3 cut(s) | 562, 649, 657 |
| TseI | GCWGC | 1 cut(s) | 428 |
| Tsp45I | GTSAC | 3 cut(s) | 562, 649, 657 |
| TspDTI | ATGAA | 2 cut(s) | 218, 608 |
| TspGWI | ACGGA | 1 cut(s) | 200 |
| TspRI | CASTG | 1 cut(s) | 174 |
| Tth111I | GACNNNGTC | 1 cut(s) | 655 |
| XapI | RAATTY | 2 cut(s) | 98, 519 |
| XbaI | TCTAGA | 2 cut(s) | 50, 146 |
| XceI | RCATGY | 1 cut(s) | 608 |
| XmiI | GTMKAC | 1 cut(s) | 37 |
| XmnI | GAANNNNTTC | 1 cut(s) | 579 |
| XspI | CTAG | 4 cut(s) | 51, 147, 597, 680 |
| ZrmI | AGTACT | 1 cut(s) | 646 |