ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| p450 | PF00067 | 1 - 185 | 2e-56 | Cytochrome P450 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 109 |
| AccII | CGCG | 1 cut(s) | 277 |
| AciI | CCGC | 2 cut(s) | 11, 277 |
| AclWI | GGATC | 3 cut(s) | 83, 287, 305 |
| AcoI | YGGCCR | 1 cut(s) | 27 |
| AcsI | RAATTY | 1 cut(s) | 341 |
| AcuI | CTGAAG | 1 cut(s) | 172 |
| AcvI | CACGTG | 1 cut(s) | 224 |
| AfaI | GTAC | 1 cut(s) | 599 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 109, 130, 462 |
| AflIII | ACRYGT | 1 cut(s) | 537 |
| AhlI | ACTAGT | 1 cut(s) | 214 |
| AluBI | AGCT | 7 cut(s) | 58, 100, 154, 186, 400, 481, 505 |
| AluI | AGCT | 7 cut(s) | 58, 100, 154, 186, 400, 481, 505 |
| Alw21I | GWGCWC | 3 cut(s) | 60, 102, 507 |
| AlwI | GGATC | 3 cut(s) | 83, 287, 305 |
| AoxI | GGCC | 1 cut(s) | 27 |
| ApoI | RAATTY | 1 cut(s) | 341 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 415, 447 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 345 |
| AspS9I | GGNCC | 1 cut(s) | 121 |
| AsuC2I | CCSGG | 2 cut(s) | 383, 435 |
| AsuHPI | GGTGA | 1 cut(s) | 187 |
| AvaII | GGWCC | 1 cut(s) | 121 |
| BanII | GRGCYC | 3 cut(s) | 60, 102, 507 |
| BbrPI | CACGTG | 1 cut(s) | 224 |
| Bbv12I | GWGCWC | 3 cut(s) | 60, 102, 507 |
| BccI | CCATC | 2 cut(s) | 239, 245 |
| BceAI | ACGGC | 1 cut(s) | 24 |
| BclI | TGATCA | 1 cut(s) | 3 |
| BcnI | CCSGG | 2 cut(s) | 383, 435 |
| BcuI | ACTAGT | 1 cut(s) | 214 |
| BfaI | CTAG | 2 cut(s) | 215, 467 |
| BisI | GCNGC | 1 cut(s) | 12 |
| BlpI | GCTNAGC | 1 cut(s) | 588 |
| BlsI | GCNGC | 1 cut(s) | 13 |
| Bme1390I | CCNGG | 2 cut(s) | 383, 435 |
| Bme18I | GGWCC | 1 cut(s) | 121 |
| BmgT120I | GGNCC | 1 cut(s) | 121 |
| BmiI | GGNNCC | 1 cut(s) | 47 |
| BmrFI | CCNGG | 2 cut(s) | 383, 435 |
| BmrI | ACTGGG | 2 cut(s) | 194, 508 |
| BmsI | GCATC | 1 cut(s) | 76 |
| BmuI | ACTGGG | 2 cut(s) | 194, 508 |
| BpmI | CTGGAG | 1 cut(s) | 316 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 588 |
| BpuEI | CTTGAG | 2 cut(s) | 82, 184 |
| BpuMI | CCSGG | 2 cut(s) | 383, 435 |
| Bsa29I | ATCGAT | 2 cut(s) | 35, 249 |
| BsaAI | YACGTR | 1 cut(s) | 224 |
| BsaJI | CCNNGG | 3 cut(s) | 71, 382, 543 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 109, 130, 462 |
| Bse1I | ACTGG | 2 cut(s) | 200, 503 |
| Bse3DI | GCAATG | 1 cut(s) | 487 |
| BseCI | ATCGAT | 2 cut(s) | 35, 249 |
| BseDI | CCNNGG | 3 cut(s) | 71, 382, 543 |
| BseGI | GGATG | 1 cut(s) | 67 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 109, 130, 462 |
| BseMI | GCAATG | 1 cut(s) | 487 |
| BseNI | ACTGG | 2 cut(s) | 200, 503 |
| Bsh1236I | CGCG | 1 cut(s) | 277 |
| BshFI | GGCC | 1 cut(s) | 29 |
| BshVI | ATCGAT | 2 cut(s) | 35, 249 |
| BsiHKAI | GWGCWC | 3 cut(s) | 60, 102, 507 |
| BsiSI | CCGG | 2 cut(s) | 382, 434 |
| BslFI | GGGAC | 2 cut(s) | 203, 399 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 109, 130, 462 |
| BsmFI | GGGAC | 2 cut(s) | 203, 399 |
| BsnI | GGCC | 1 cut(s) | 29 |
| Bsp1286I | GDGCHC | 3 cut(s) | 60, 102, 507 |
| Bsp143I | GATC | 4 cut(s) | 3, 75, 279, 310 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 588 |
| BspACI | CCGC | 2 cut(s) | 11, 277 |
| BspANI | GGCC | 1 cut(s) | 29 |
| BspDI | ATCGAT | 2 cut(s) | 35, 249 |
| BspFNI | CGCG | 1 cut(s) | 277 |
| BspHI | TCATGA | 2 cut(s) | 78, 360 |
| BspLI | GGNNCC | 1 cut(s) | 47 |
| BspPI | GGATC | 3 cut(s) | 83, 287, 305 |
| BspQI | GCTCTTC | 1 cut(s) | 90 |
| BsrDI | GCAATG | 1 cut(s) | 487 |
| BsrI | ACTGG | 2 cut(s) | 200, 503 |
| BssECI | CCNNGG | 3 cut(s) | 71, 382, 543 |
| BssMI | GATC | 4 cut(s) | 3, 75, 279, 310 |
| BssT1I | CCWWGG | 1 cut(s) | 71 |
| Bst4CI | ACNGT | 3 cut(s) | 210, 460, 564 |
| Bst6I | CTCTTC | 2 cut(s) | 90, 301 |
| BstBAI | YACGTR | 1 cut(s) | 224 |
| BstC8I | GCNNGC | 2 cut(s) | 518, 585 |
| BstDEI | CTNAG | 2 cut(s) | 267, 588 |
| BstF5I | GGATG | 1 cut(s) | 67 |
| BstFNI | CGCG | 1 cut(s) | 277 |
| BstKTI | GATC | 4 cut(s) | 6, 78, 282, 313 |
| BstMBI | GATC | 4 cut(s) | 3, 75, 279, 310 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 64, 448, 589 |
| BstNSI | RCATGY | 1 cut(s) | 541 |
| BstSCI | CCNGG | 2 cut(s) | 381, 433 |
| BstUI | CGCG | 1 cut(s) | 277 |
| BstX2I | RGATCY | 1 cut(s) | 310 |
| BstYI | RGATCY | 1 cut(s) | 310 |
| Bsu15I | ATCGAT | 2 cut(s) | 35, 249 |
| BsuRI | GGCC | 1 cut(s) | 29 |
| BsuTUI | ATCGAT | 2 cut(s) | 35, 249 |
| BtsCI | GGATG | 1 cut(s) | 67 |
| BtsIMutI | CAGTG | 1 cut(s) | 560 |
| Cac8I | GCNNGC | 2 cut(s) | 518, 585 |
| CciI | TCATGA | 2 cut(s) | 78, 360 |
| Cfr13I | GGNCC | 1 cut(s) | 121 |
| ClaI | ATCGAT | 2 cut(s) | 35, 249 |
| Csp6I | GTAC | 1 cut(s) | 598 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 19, 54 |
| CviAII | CATG | 4 cut(s) | 79, 361, 389, 538 |
| CviQI | GTAC | 1 cut(s) | 598 |
| DdeI | CTNAG | 2 cut(s) | 267, 588 |
| DpnI | GATC | 4 cut(s) | 5, 77, 281, 312 |
| DpnII | GATC | 4 cut(s) | 3, 75, 279, 310 |
| EaeI | YGGCCR | 1 cut(s) | 27 |
| Eam1104I | CTCTTC | 2 cut(s) | 90, 301 |
| EarI | CTCTTC | 2 cut(s) | 90, 301 |
| Ecl136II | GAGCTC | 3 cut(s) | 58, 100, 505 |
| Eco130I | CCWWGG | 1 cut(s) | 71 |
| Eco24I | GRGCYC | 3 cut(s) | 60, 102, 507 |
| Eco47I | GGWCC | 1 cut(s) | 121 |
| Eco53kI | GAGCTC | 3 cut(s) | 58, 100, 505 |
| Eco57I | CTGAAG | 1 cut(s) | 172 |
| Eco72I | CACGTG | 1 cut(s) | 224 |
| EcoICRI | GAGCTC | 3 cut(s) | 58, 100, 505 |
| EcoT14I | CCWWGG | 1 cut(s) | 71 |
| EcoT38I | GRGCYC | 3 cut(s) | 60, 102, 507 |
| ErhI | CCWWGG | 1 cut(s) | 71 |
| FaeI | CATG | 4 cut(s) | 82, 364, 392, 541 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 170, 202 |
| FaqI | GGGAC | 2 cut(s) | 203, 399 |
| FatI | CATG | 4 cut(s) | 78, 360, 388, 537 |
| FbaI | TGATCA | 1 cut(s) | 3 |
| Fnu4HI | GCNGC | 1 cut(s) | 12 |
| FokI | GGATG | 1 cut(s) | 54 |
| FriOI | GRGCYC | 3 cut(s) | 60, 102, 507 |
| Fsp4HI | GCNGC | 1 cut(s) | 12 |
| FspBI | CTAG | 2 cut(s) | 215, 467 |
| GluI | GCNGC | 1 cut(s) | 12 |
| GsuI | CTGGAG | 1 cut(s) | 316 |
| HaeIII | GGCC | 1 cut(s) | 29 |
| HapII | CCGG | 2 cut(s) | 382, 434 |
| Hin1II | CATG | 4 cut(s) | 82, 364, 392, 541 |
| HinfI | GANTC | 3 cut(s) | 85, 137, 227 |
| HpaII | CCGG | 2 cut(s) | 382, 434 |
| HphI | GGTGA | 1 cut(s) | 187 |
| Hpy166II | GTNNAC | 1 cut(s) | 289 |
| Hpy188I | TCNGA | 4 cut(s) | 142, 191, 328, 544 |
| Hpy188III | TCNNGA | 6 cut(s) | 61, 79, 295, 350, 361, 417 |
| Hpy8I | GTNNAC | 1 cut(s) | 289 |
| HpyAV | CCTTC | 1 cut(s) | 172 |
| HpyCH4III | ACNGT | 3 cut(s) | 210, 460, 564 |
| HpyCH4IV | ACGT | 2 cut(s) | 223, 596 |
| HpyCH4V | TGCA | 3 cut(s) | 206, 442, 487 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 64, 448, 589 |
| HpyF3I | CTNAG | 2 cut(s) | 267, 588 |
| HpySE526I | ACGT | 2 cut(s) | 223, 596 |
| Hsp92II | CATG | 4 cut(s) | 82, 364, 392, 541 |
| Ksp22I | TGATCA | 1 cut(s) | 3 |
| Kzo9I | GATC | 4 cut(s) | 3, 75, 279, 310 |
| LguI | GCTCTTC | 1 cut(s) | 90 |
| LmnI | GCTCC | 5 cut(s) | 45, 105, 297, 502, 510 |
| LpnPI | CCDG | 9 cut(s) | 213, 280, 363, 395, 402, 447, 458, 467, 484 |
| LweI | GCATC | 1 cut(s) | 76 |
| MaeI | CTAG | 2 cut(s) | 215, 467 |
| MaeII | ACGT | 2 cut(s) | 223, 596 |
| MaeIII | GTNAC | 1 cut(s) | 210 |
| MalI | GATC | 4 cut(s) | 5, 77, 281, 312 |
| MboI | GATC | 4 cut(s) | 3, 75, 279, 310 |
| MboII | GAAGA | 4 cut(s) | 94, 107, 146, 318 |
| MflI | RGATCY | 1 cut(s) | 310 |
| MhlI | GDGCHC | 3 cut(s) | 60, 102, 507 |
| MluCI | AATT | 2 cut(s) | 341, 443 |
| MmeI | TCCRAC | 1 cut(s) | 306 |
| MnlI | CCTC | 7 cut(s) | 57, 229, 331, 389, 419, 534, 538 |
| MroXI | GAANNNNTTC | 1 cut(s) | 345 |
| MseI | TTAA | 1 cut(s) | 495 |
| MspA1I | CMGCKG | 1 cut(s) | 481 |
| MspI | CCGG | 2 cut(s) | 382, 434 |
| MspR9I | CCNGG | 2 cut(s) | 383, 435 |
| MvnI | CGCG | 1 cut(s) | 277 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 64, 448, 589 |
| NciI | CCSGG | 2 cut(s) | 383, 435 |
| NdeII | GATC | 4 cut(s) | 3, 75, 279, 310 |
| NlaIII | CATG | 4 cut(s) | 82, 364, 392, 541 |
| NlaIV | GGNNCC | 1 cut(s) | 47 |
| NmeAIII | GCCGAG | 1 cut(s) | 79 |
| NspI | RCATGY | 1 cut(s) | 541 |
| PagI | TCATGA | 2 cut(s) | 78, 360 |
| PciI | ACATGT | 1 cut(s) | 537 |
| PciSI | GCTCTTC | 1 cut(s) | 90 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 32 |
| PdmI | GAANNNNTTC | 1 cut(s) | 345 |
| PfeI | GAWTC | 3 cut(s) | 85, 137, 227 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 109 |
| PkrI | GCNGC | 1 cut(s) | 13 |
| PmaCI | CACGTG | 1 cut(s) | 224 |
| PmlI | CACGTG | 1 cut(s) | 224 |
| Ppu21I | YACGTR | 1 cut(s) | 224 |
| PscI | ACATGT | 1 cut(s) | 537 |
| Psp124BI | GAGCTC | 3 cut(s) | 60, 102, 507 |
| PspCI | CACGTG | 1 cut(s) | 224 |
| PspN4I | GGNNCC | 1 cut(s) | 47 |
| PspPI | GGNCC | 1 cut(s) | 121 |
| PsuI | RGATCY | 1 cut(s) | 310 |
| PvuII | CAGCTG | 1 cut(s) | 481 |
| RsaI | GTAC | 1 cut(s) | 599 |
| RsaNI | GTAC | 1 cut(s) | 598 |
| SacI | GAGCTC | 3 cut(s) | 60, 102, 507 |
| SapI | GCTCTTC | 1 cut(s) | 90 |
| SaqAI | TTAA | 1 cut(s) | 495 |
| SatI | GCNGC | 1 cut(s) | 12 |
| Sau3AI | GATC | 4 cut(s) | 3, 75, 279, 310 |
| Sau96I | GGNCC | 1 cut(s) | 121 |
| ScrFI | CCNGG | 2 cut(s) | 383, 435 |
| SduI | GDGCHC | 3 cut(s) | 60, 102, 507 |
| SfaNI | GCATC | 1 cut(s) | 76 |
| SinI | GGWCC | 1 cut(s) | 121 |
| SmlI | CTYRAG | 2 cut(s) | 61, 163 |
| SmoI | CTYRAG | 2 cut(s) | 61, 163 |
| SpeI | ACTAGT | 1 cut(s) | 214 |
| Sse9I | AATT | 2 cut(s) | 341, 443 |
| SsiI | CCGC | 2 cut(s) | 11, 277 |
| SspMI | CTAG | 2 cut(s) | 215, 467 |
| SstI | GAGCTC | 3 cut(s) | 60, 102, 507 |
| StyD4I | CCNGG | 2 cut(s) | 381, 433 |
| StyI | CCWWGG | 1 cut(s) | 71 |
| TaaI | ACNGT | 3 cut(s) | 210, 460, 564 |
| TaiI | ACGT | 2 cut(s) | 226, 599 |
| TaqI | TCGA | 4 cut(s) | 35, 156, 234, 249 |
| TaqII | GACCGA | 1 cut(s) | 138 |
| TasI | AATT | 2 cut(s) | 341, 443 |
| TauI | GCSGC | 1 cut(s) | 14 |
| TfiI | GAWTC | 3 cut(s) | 85, 137, 227 |
| Tru1I | TTAA | 1 cut(s) | 495 |
| Tru9I | TTAA | 1 cut(s) | 495 |
| TscAI | CASTG | 1 cut(s) | 567 |
| TspDTI | ATGAA | 3 cut(s) | 95, 349, 377 |
| TspRI | CASTG | 1 cut(s) | 567 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 109 |
| VpaK11BI | GGWCC | 1 cut(s) | 121 |
| XapI | RAATTY | 1 cut(s) | 341 |
| XceI | RCATGY | 1 cut(s) | 541 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 110 |
| XmnI | GAANNNNTTC | 1 cut(s) | 345 |
| XspI | CTAG | 2 cut(s) | 215, 467 |