Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 8 - 126 | 4.2e-21 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 69, 351 |
| AclWI | GGATC | 1 cut(s) | 264 |
| AdeI | CACNNNGTG | 1 cut(s) | 197 |
| AgsI | TTSAA | 1 cut(s) | 290 |
| AluBI | AGCT | 3 cut(s) | 154, 225, 431 |
| AluI | AGCT | 3 cut(s) | 154, 225, 431 |
| AlwI | GGATC | 1 cut(s) | 264 |
| ApeKI | GCWGC | 2 cut(s) | 154, 222 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 183, 420 |
| AspS9I | GGNCC | 1 cut(s) | 348 |
| AsuHPI | GGTGA | 2 cut(s) | 104, 323 |
| AvaII | GGWCC | 1 cut(s) | 348 |
| BbvI | GCAGC | 2 cut(s) | 141, 234 |
| BccI | CCATC | 1 cut(s) | 23 |
| BfaI | CTAG | 2 cut(s) | 308, 374 |
| BfmI | CTRYAG | 1 cut(s) | 455 |
| BisI | GCNGC | 2 cut(s) | 155, 223 |
| BlpI | GCTNAGC | 1 cut(s) | 150 |
| BlsI | GCNGC | 2 cut(s) | 156, 224 |
| Bme18I | GGWCC | 1 cut(s) | 348 |
| BmgT120I | GGNCC | 1 cut(s) | 348 |
| BmsI | GCATC | 1 cut(s) | 439 |
| BpmI | CTGGAG | 1 cut(s) | 417 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 150 |
| BpuEI | CTTGAG | 1 cut(s) | 411 |
| Bse3DI | GCAATG | 1 cut(s) | 99 |
| BseGI | GGATG | 1 cut(s) | 454 |
| BseMI | GCAATG | 1 cut(s) | 99 |
| BseMII | CTCAG | 1 cut(s) | 141 |
| BseXI | GCAGC | 2 cut(s) | 141, 234 |
| Bsp143I | GATC | 1 cut(s) | 256 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 150 |
| BspACI | CCGC | 2 cut(s) | 69, 351 |
| BspCNI | CTCAG | 1 cut(s) | 142 |
| BspHI | TCATGA | 1 cut(s) | 259 |
| BspPI | GGATC | 1 cut(s) | 264 |
| BsrDI | GCAATG | 1 cut(s) | 99 |
| BssMI | GATC | 1 cut(s) | 256 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 110 |
| BstC8I | GCNNGC | 2 cut(s) | 106, 159 |
| BstDEI | CTNAG | 2 cut(s) | 150, 226 |
| BstF5I | GGATG | 1 cut(s) | 454 |
| BstKTI | GATC | 1 cut(s) | 259 |
| BstMBI | GATC | 1 cut(s) | 256 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 15, 110, 146, 239, 248 |
| BstSFI | CTRYAG | 1 cut(s) | 455 |
| BstV1I | GCAGC | 2 cut(s) | 141, 234 |
| BtsCI | GGATG | 1 cut(s) | 454 |
| Cac8I | GCNNGC | 2 cut(s) | 106, 159 |
| CciI | TCATGA | 1 cut(s) | 259 |
| Cfr13I | GGNCC | 1 cut(s) | 348 |
| CviAII | CATG | 4 cut(s) | 19, 146, 260, 359 |
| CviJI | RGCY | 7 cut(s) | 9, 108, 154, 225, 233, 242, 431 |
| CviKI_1 | RGCY | 7 cut(s) | 9, 108, 154, 225, 233, 242, 431 |
| DdeI | CTNAG | 2 cut(s) | 150, 226 |
| DpnI | GATC | 1 cut(s) | 258 |
| DpnII | GATC | 1 cut(s) | 256 |
| DraIII | CACNNNGTG | 1 cut(s) | 197 |
| Eco47I | GGWCC | 1 cut(s) | 348 |
| FaeI | CATG | 4 cut(s) | 22, 149, 263, 362 |
| FatI | CATG | 4 cut(s) | 18, 145, 259, 358 |
| FauNDI | CATATG | 1 cut(s) | 411 |
| Fnu4HI | GCNGC | 2 cut(s) | 155, 223 |
| Fsp4HI | GCNGC | 2 cut(s) | 155, 223 |
| FspBI | CTAG | 2 cut(s) | 308, 374 |
| GluI | GCNGC | 2 cut(s) | 155, 223 |
| GsuI | CTGGAG | 1 cut(s) | 417 |
| Hin1II | CATG | 4 cut(s) | 22, 149, 263, 362 |
| HinfI | GANTC | 3 cut(s) | 279, 392, 398 |
| HphI | GGTGA | 2 cut(s) | 104, 323 |
| Hpy188I | TCNGA | 2 cut(s) | 397, 403 |
| Hpy188III | TCNNGA | 3 cut(s) | 260, 434, 446 |
| HpyAV | CCTTC | 3 cut(s) | 82, 151, 232 |
| HpyCH4V | TGCA | 2 cut(s) | 18, 104 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 15, 110, 146, 239, 248 |
| HpyF3I | CTNAG | 2 cut(s) | 150, 226 |
| Hsp92II | CATG | 4 cut(s) | 22, 149, 263, 362 |
| Kzo9I | GATC | 1 cut(s) | 256 |
| LmnI | GCTCC | 1 cut(s) | 436 |
| LpnPI | CCDG | 6 cut(s) | 90, 156, 173, 363, 431, 447 |
| Lsp1109I | GCAGC | 2 cut(s) | 141, 234 |
| LweI | GCATC | 1 cut(s) | 439 |
| MaeI | CTAG | 2 cut(s) | 308, 374 |
| MaeIII | GTNAC | 1 cut(s) | 244 |
| MalI | GATC | 1 cut(s) | 258 |
| MboI | GATC | 1 cut(s) | 256 |
| MboII | GAAGA | 2 cut(s) | 36, 302 |
| MluCI | AATT | 2 cut(s) | 294, 385 |
| MmeI | TCCRAC | 1 cut(s) | 156 |
| MnlI | CCTC | 5 cut(s) | 53, 145, 223, 247, 435 |
| MroXI | GAANNNNTTC | 2 cut(s) | 183, 420 |
| MseI | TTAA | 3 cut(s) | 165, 297, 384 |
| MslI | CAYNNNNRTG | 1 cut(s) | 410 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 15, 110, 146, 239, 248 |
| NdeI | CATATG | 1 cut(s) | 411 |
| NdeII | GATC | 1 cut(s) | 256 |
| NlaIII | CATG | 4 cut(s) | 22, 149, 263, 362 |
| NmuCI | GTSAC | 1 cut(s) | 244 |
| PagI | TCATGA | 1 cut(s) | 259 |
| PdmI | GAANNNNTTC | 2 cut(s) | 183, 420 |
| PfeI | GAWTC | 3 cut(s) | 279, 392, 398 |
| PkrI | GCNGC | 2 cut(s) | 156, 224 |
| PspPI | GGNCC | 1 cut(s) | 348 |
| RseI | CAYNNNNRTG | 1 cut(s) | 410 |
| SaqAI | TTAA | 3 cut(s) | 165, 297, 384 |
| SatI | GCNGC | 2 cut(s) | 155, 223 |
| Sau3AI | GATC | 1 cut(s) | 256 |
| Sau96I | GGNCC | 1 cut(s) | 348 |
| SetI | ASST | 5 cut(s) | 156, 227, 313, 331, 433 |
| SfaNI | GCATC | 1 cut(s) | 439 |
| SfcI | CTRYAG | 1 cut(s) | 455 |
| SinI | GGWCC | 1 cut(s) | 348 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 410 |
| SmlI | CTYRAG | 1 cut(s) | 426 |
| SmoI | CTYRAG | 1 cut(s) | 426 |
| Sse9I | AATT | 2 cut(s) | 294, 385 |
| SsiI | CCGC | 2 cut(s) | 69, 351 |
| SspMI | CTAG | 2 cut(s) | 308, 374 |
| TasI | AATT | 2 cut(s) | 294, 385 |
| TfiI | GAWTC | 3 cut(s) | 279, 392, 398 |
| Tru1I | TTAA | 3 cut(s) | 165, 297, 384 |
| Tru9I | TTAA | 3 cut(s) | 165, 297, 384 |
| TseFI | GTSAC | 1 cut(s) | 244 |
| TseI | GCWGC | 2 cut(s) | 154, 222 |
| Tsp45I | GTSAC | 1 cut(s) | 244 |
| TspDTI | ATGAA | 4 cut(s) | 35, 88, 323, 398 |
| VpaK11BI | GGWCC | 1 cut(s) | 348 |
| XmnI | GAANNNNTTC | 2 cut(s) | 183, 420 |
| XspI | CTAG | 2 cut(s) | 308, 374 |