Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 456 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 95 |
| AccI | GTMKAC | 1 cut(s) | 263 |
| AciI | CCGC | 3 cut(s) | 413, 442, 468 |
| AclWI | GGATC | 1 cut(s) | 426 |
| AcuI | CTGAAG | 1 cut(s) | 332 |
| AfaI | GTAC | 1 cut(s) | 13 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 95, 278 |
| AflIII | ACRYGT | 1 cut(s) | 25 |
| AgsI | TTSAA | 2 cut(s) | 38, 256 |
| AluBI | AGCT | 3 cut(s) | 110, 506, 561 |
| AluI | AGCT | 3 cut(s) | 110, 506, 561 |
| Alw26I | GTCTC | 1 cut(s) | 120 |
| AlwI | GGATC | 1 cut(s) | 426 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 95 |
| AoxI | GGCC | 2 cut(s) | 407, 573 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 83 |
| AsuHPI | GGTGA | 1 cut(s) | 40 |
| BbsI | GAAGAC | 1 cut(s) | 507 |
| BciVI | GTATCC | 1 cut(s) | 464 |
| BclI | TGATCA | 2 cut(s) | 45, 313 |
| BcoDI | GTCTC | 1 cut(s) | 120 |
| BfaI | CTAG | 4 cut(s) | 293, 387, 495, 607 |
| BfuI | GTATCC | 1 cut(s) | 464 |
| BmsI | GCATC | 1 cut(s) | 225 |
| BpiI | GAAGAC | 1 cut(s) | 507 |
| BpmI | CTGGAG | 1 cut(s) | 258 |
| BpuEI | CTTGAG | 1 cut(s) | 191 |
| BsaAI | YACGTR | 1 cut(s) | 138 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 215, 245, 256, 286 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 95, 278 |
| Bse118I | RCCGGY | 1 cut(s) | 409 |
| Bse1I | ACTGG | 1 cut(s) | 100 |
| BseGI | GGATG | 3 cut(s) | 240, 325, 373 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 95, 278 |
| BseMII | CTCAG | 2 cut(s) | 377, 412 |
| BseNI | ACTGG | 1 cut(s) | 100 |
| BseRI | GAGGAG | 1 cut(s) | 516 |
| BshFI | GGCC | 2 cut(s) | 409, 575 |
| BsiSI | CCGG | 1 cut(s) | 410 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 95, 278 |
| BsmAI | GTCTC | 1 cut(s) | 120 |
| BsmI | GAATGC | 1 cut(s) | 210 |
| BsnI | GGCC | 2 cut(s) | 409, 575 |
| Bsp143I | GATC | 3 cut(s) | 45, 313, 418 |
| BspACI | CCGC | 3 cut(s) | 413, 442, 468 |
| BspANI | GGCC | 2 cut(s) | 409, 575 |
| BspCNI | CTCAG | 2 cut(s) | 376, 411 |
| BspHI | TCATGA | 1 cut(s) | 102 |
| BspPI | GGATC | 1 cut(s) | 426 |
| BsrFI | RCCGGY | 1 cut(s) | 409 |
| BsrI | ACTGG | 1 cut(s) | 100 |
| BssAI | RCCGGY | 1 cut(s) | 409 |
| BssMI | GATC | 3 cut(s) | 45, 313, 418 |
| BssNAI | GTATAC | 1 cut(s) | 264 |
| Bst1107I | GTATAC | 1 cut(s) | 264 |
| Bst4CI | ACNGT | 3 cut(s) | 115, 251, 261 |
| BstBAI | YACGTR | 1 cut(s) | 138 |
| BstC8I | GCNNGC | 1 cut(s) | 411 |
| BstDEI | CTNAG | 2 cut(s) | 363, 398 |
| BstF5I | GGATG | 3 cut(s) | 240, 325, 373 |
| BstKTI | GATC | 3 cut(s) | 48, 316, 421 |
| BstMAI | GTCTC | 1 cut(s) | 120 |
| BstMBI | GATC | 3 cut(s) | 45, 313, 418 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 289 |
| BstNSI | RCATGY | 2 cut(s) | 29, 329 |
| BstV2I | GAAGAC | 1 cut(s) | 507 |
| BstZ17I | GTATAC | 1 cut(s) | 264 |
| BsuI | GTATCC | 1 cut(s) | 464 |
| BsuRI | GGCC | 2 cut(s) | 409, 575 |
| BtsCI | GGATG | 3 cut(s) | 240, 325, 373 |
| BtsI | GCAGTG | 1 cut(s) | 169 |
| BtsIMutI | CAGTG | 3 cut(s) | 93, 169, 222 |
| Cac8I | GCNNGC | 1 cut(s) | 411 |
| CaiI | CAGNNNCTG | 1 cut(s) | 95 |
| CciI | TCATGA | 1 cut(s) | 102 |
| Cfr10I | RCCGGY | 1 cut(s) | 409 |
| Csp6I | GTAC | 1 cut(s) | 12 |
| CviAII | CATG | 5 cut(s) | 26, 103, 241, 326, 379 |
| CviJI | RGCY | 7 cut(s) | 110, 283, 292, 409, 506, 561, 575 |
| CviKI_1 | RGCY | 7 cut(s) | 110, 283, 292, 409, 506, 561, 575 |
| CviQI | GTAC | 1 cut(s) | 12 |
| DdeI | CTNAG | 2 cut(s) | 363, 398 |
| DpnI | GATC | 3 cut(s) | 47, 315, 420 |
| DpnII | GATC | 3 cut(s) | 45, 313, 418 |
| EciI | GGCGGA | 1 cut(s) | 428 |
| Eco32I | GATATC | 1 cut(s) | 188 |
| Eco57I | CTGAAG | 1 cut(s) | 332 |
| EcoRV | GATATC | 1 cut(s) | 188 |
| FaeI | CATG | 5 cut(s) | 29, 106, 244, 329, 382 |
| FatI | CATG | 5 cut(s) | 25, 102, 240, 325, 378 |
| FbaI | TGATCA | 2 cut(s) | 45, 313 |
| FblI | GTMKAC | 1 cut(s) | 263 |
| FokI | GGATG | 3 cut(s) | 247, 332, 380 |
| FspBI | CTAG | 4 cut(s) | 293, 387, 495, 607 |
| GsuI | CTGGAG | 1 cut(s) | 258 |
| HaeIII | GGCC | 2 cut(s) | 409, 575 |
| HapII | CCGG | 1 cut(s) | 410 |
| Hin1II | CATG | 5 cut(s) | 29, 106, 244, 329, 382 |
| HinfI | GANTC | 3 cut(s) | 99, 128, 580 |
| HpaII | CCGG | 1 cut(s) | 410 |
| HphI | GGTGA | 1 cut(s) | 40 |
| Hpy166II | GTNNAC | 2 cut(s) | 264, 360 |
| Hpy188III | TCNNGA | 6 cut(s) | 103, 170, 275, 317, 350, 365 |
| Hpy8I | GTNNAC | 2 cut(s) | 264, 360 |
| Hpy99I | CGWCG | 1 cut(s) | 523 |
| HpyAV | CCTTC | 1 cut(s) | 565 |
| HpyCH4III | ACNGT | 3 cut(s) | 115, 251, 261 |
| HpyCH4IV | ACGT | 4 cut(s) | 14, 137, 372, 512 |
| HpyCH4V | TGCA | 4 cut(s) | 208, 302, 378, 587 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 289 |
| HpyF3I | CTNAG | 2 cut(s) | 363, 398 |
| HpySE526I | ACGT | 4 cut(s) | 14, 137, 372, 512 |
| Hsp92II | CATG | 5 cut(s) | 29, 106, 244, 329, 382 |
| KroI | GCCGGC | 1 cut(s) | 409 |
| KroNI | GCCGGC | 1 cut(s) | 411 |
| Ksp22I | TGATCA | 2 cut(s) | 45, 313 |
| Kzo9I | GATC | 3 cut(s) | 45, 313, 418 |
| LmnI | GCTCC | 2 cut(s) | 503, 558 |
| LweI | GCATC | 1 cut(s) | 225 |
| MaeI | CTAG | 4 cut(s) | 293, 387, 495, 607 |
| MaeII | ACGT | 4 cut(s) | 14, 137, 372, 512 |
| MaeIII | GTNAC | 1 cut(s) | 524 |
| MalI | GATC | 3 cut(s) | 47, 315, 420 |
| MboI | GATC | 3 cut(s) | 45, 313, 418 |
| MboII | GAAGA | 1 cut(s) | 507 |
| MluCI | AATT | 2 cut(s) | 150, 309 |
| MlyI | GAGTC | 1 cut(s) | 122 |
| MnlI | CCTC | 9 cut(s) | 112, 217, 271, 282, 407, 409, 440, 494, 530 |
| MroNI | GCCGGC | 1 cut(s) | 409 |
| MroXI | GAANNNNTTC | 1 cut(s) | 83 |
| MseI | TTAA | 4 cut(s) | 71, 308, 425, 462 |
| MslI | CAYNNNNRTG | 1 cut(s) | 30 |
| MspI | CCGG | 1 cut(s) | 410 |
| Mva1269I | GAATGC | 1 cut(s) | 210 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 289 |
| NaeI | GCCGGC | 1 cut(s) | 411 |
| NdeII | GATC | 3 cut(s) | 45, 313, 418 |
| NgoMIV | GCCGGC | 1 cut(s) | 409 |
| NlaIII | CATG | 5 cut(s) | 29, 106, 244, 329, 382 |
| NspI | RCATGY | 2 cut(s) | 29, 329 |
| PagI | TCATGA | 1 cut(s) | 102 |
| PciI | ACATGT | 1 cut(s) | 25 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 518 |
| PctI | GAATGC | 1 cut(s) | 210 |
| PdiI | GCCGGC | 1 cut(s) | 411 |
| PdmI | GAANNNNTTC | 1 cut(s) | 83 |
| PfeI | GAWTC | 2 cut(s) | 99, 580 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 95 |
| PleI | GAGTC | 1 cut(s) | 122 |
| PpsI | GAGTC | 1 cut(s) | 122 |
| Ppu21I | YACGTR | 1 cut(s) | 138 |
| PscI | ACATGT | 1 cut(s) | 25 |
| PsiI | TTATAA | 1 cut(s) | 456 |
| PstNI | CAGNNNCTG | 1 cut(s) | 95 |
| RsaI | GTAC | 1 cut(s) | 13 |
| RsaNI | GTAC | 1 cut(s) | 12 |
| RseI | CAYNNNNRTG | 1 cut(s) | 30 |
| SaqAI | TTAA | 4 cut(s) | 71, 308, 425, 462 |
| Sau3AI | GATC | 3 cut(s) | 45, 313, 418 |
| SchI | GAGTC | 1 cut(s) | 122 |
| SfaNI | GCATC | 1 cut(s) | 225 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 30 |
| SmlI | CTYRAG | 1 cut(s) | 170 |
| SmoI | CTYRAG | 1 cut(s) | 170 |
| Sse9I | AATT | 2 cut(s) | 150, 309 |
| SsiI | CCGC | 3 cut(s) | 413, 442, 468 |
| SspMI | CTAG | 4 cut(s) | 293, 387, 495, 607 |
| TaaI | ACNGT | 3 cut(s) | 115, 251, 261 |
| TaiI | ACGT | 4 cut(s) | 17, 140, 375, 515 |
| TaqI | TCGA | 1 cut(s) | 521 |
| TasI | AATT | 2 cut(s) | 150, 309 |
| TfiI | GAWTC | 2 cut(s) | 99, 580 |
| Tru1I | TTAA | 4 cut(s) | 71, 308, 425, 462 |
| Tru9I | TTAA | 4 cut(s) | 71, 308, 425, 462 |
| TscAI | CASTG | 3 cut(s) | 100, 169, 222 |
| TspDTI | ATGAA | 2 cut(s) | 91, 119 |
| TspRI | CASTG | 3 cut(s) | 100, 169, 222 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 95 |
| XceI | RCATGY | 2 cut(s) | 29, 329 |
| XmiI | GTMKAC | 1 cut(s) | 263 |
| XmnI | GAANNNNTTC | 1 cut(s) | 83 |
| XspI | CTAG | 4 cut(s) | 293, 387, 495, 607 |