Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 263, 490, 540 |
| AclWI | GGATC | 1 cut(s) | 535 |
| AfaI | GTAC | 2 cut(s) | 15, 522 |
| AgsI | TTSAA | 2 cut(s) | 224, 451 |
| Alw26I | GTCTC | 1 cut(s) | 84 |
| AlwI | GGATC | 1 cut(s) | 535 |
| AoxI | GGCC | 1 cut(s) | 506 |
| AspS9I | GGNCC | 6 cut(s) | 260, 281, 302, 419, 476, 506 |
| AvaII | GGWCC | 5 cut(s) | 260, 281, 302, 419, 476 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 161, 194 |
| BbvCI | CCTCAGC | 1 cut(s) | 458 |
| BccI | CCATC | 2 cut(s) | 245, 350 |
| BceAI | ACGGC | 1 cut(s) | 318 |
| BcoDI | GTCTC | 1 cut(s) | 84 |
| BfaI | CTAG | 1 cut(s) | 95 |
| BisI | GCNGC | 1 cut(s) | 490 |
| BlsI | GCNGC | 1 cut(s) | 491 |
| Bme18I | GGWCC | 5 cut(s) | 260, 281, 302, 419, 476 |
| BmgT120I | GGNCC | 6 cut(s) | 260, 281, 302, 419, 476, 506 |
| BmiI | GGNNCC | 1 cut(s) | 57 |
| Bpu10I | CCTNAGC | 1 cut(s) | 458 |
| BpuEI | CTTGAG | 1 cut(s) | 408 |
| Bsa29I | ATCGAT | 1 cut(s) | 33 |
| BsaJI | CCNNGG | 1 cut(s) | 494 |
| BsaWI | WCCGGW | 2 cut(s) | 274, 416 |
| Bse118I | RCCGGY | 1 cut(s) | 265 |
| Bse1I | ACTGG | 4 cut(s) | 153, 284, 304, 317 |
| BseCI | ATCGAT | 1 cut(s) | 33 |
| BseDI | CCNNGG | 1 cut(s) | 494 |
| BseMII | CTCAG | 3 cut(s) | 108, 129, 449 |
| BseNI | ACTGG | 4 cut(s) | 153, 284, 304, 317 |
| BseYI | CCCAGC | 1 cut(s) | 86 |
| Bsh1285I | CGRYCG | 1 cut(s) | 279 |
| BshFI | GGCC | 1 cut(s) | 508 |
| BshVI | ATCGAT | 1 cut(s) | 33 |
| BsiEI | CGRYCG | 1 cut(s) | 279 |
| BsiSI | CCGG | 3 cut(s) | 266, 275, 417 |
| BslFI | GGGAC | 1 cut(s) | 148 |
| BsmAI | GTCTC | 1 cut(s) | 84 |
| BsmFI | GGGAC | 1 cut(s) | 148 |
| BsnI | GGCC | 1 cut(s) | 508 |
| Bsp143I | GATC | 2 cut(s) | 30, 527 |
| BspACI | CCGC | 3 cut(s) | 263, 490, 540 |
| BspANI | GGCC | 1 cut(s) | 508 |
| BspCNI | CTCAG | 3 cut(s) | 109, 130, 450 |
| BspDI | ATCGAT | 1 cut(s) | 33 |
| BspLI | GGNNCC | 1 cut(s) | 57 |
| BspPI | GGATC | 1 cut(s) | 535 |
| BsrFI | RCCGGY | 1 cut(s) | 265 |
| BsrI | ACTGG | 4 cut(s) | 153, 284, 304, 317 |
| BssAI | RCCGGY | 1 cut(s) | 265 |
| BssECI | CCNNGG | 1 cut(s) | 494 |
| BssMI | GATC | 2 cut(s) | 30, 527 |
| BssT1I | CCWWGG | 1 cut(s) | 494 |
| Bst4CI | ACNGT | 1 cut(s) | 211 |
| BstDEI | CTNAG | 3 cut(s) | 117, 138, 458 |
| BstKTI | GATC | 2 cut(s) | 33, 530 |
| BstMAI | GTCTC | 1 cut(s) | 84 |
| BstMBI | GATC | 2 cut(s) | 30, 527 |
| BstMCI | CGRYCG | 1 cut(s) | 279 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 399, 489, 505, 514 |
| BstNSI | RCATGY | 1 cut(s) | 233 |
| BstX2I | RGATCY | 1 cut(s) | 527 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 312 |
| BstYI | RGATCY | 1 cut(s) | 527 |
| Bsu15I | ATCGAT | 1 cut(s) | 33 |
| BsuRI | GGCC | 1 cut(s) | 508 |
| BsuTUI | ATCGAT | 1 cut(s) | 33 |
| BtgZI | GCGATG | 1 cut(s) | 41 |
| BtsI | GCAGTG | 1 cut(s) | 21 |
| BtsIMutI | CAGTG | 2 cut(s) | 21, 297 |
| Cfr10I | RCCGGY | 1 cut(s) | 265 |
| Cfr13I | GGNCC | 6 cut(s) | 260, 281, 302, 419, 476, 506 |
| ClaI | ATCGAT | 1 cut(s) | 33 |
| Csp6I | GTAC | 2 cut(s) | 14, 521 |
| CviAII | CATG | 4 cut(s) | 76, 230, 403, 524 |
| CviJI | RGCY | 6 cut(s) | 41, 152, 333, 457, 489, 508 |
| CviKI_1 | RGCY | 6 cut(s) | 41, 152, 333, 457, 489, 508 |
| CviQI | GTAC | 2 cut(s) | 14, 521 |
| DdeI | CTNAG | 3 cut(s) | 117, 138, 458 |
| DpnI | GATC | 2 cut(s) | 32, 529 |
| DpnII | GATC | 2 cut(s) | 30, 527 |
| EciI | GGCGGA | 1 cut(s) | 252 |
| Eco130I | CCWWGG | 1 cut(s) | 494 |
| Eco47I | GGWCC | 5 cut(s) | 260, 281, 302, 419, 476 |
| EcoT14I | CCWWGG | 1 cut(s) | 494 |
| ErhI | CCWWGG | 1 cut(s) | 494 |
| FaeI | CATG | 4 cut(s) | 79, 233, 406, 527 |
| FaiI | YATR | 6 cut(s) | 77, 180, 231, 404, 501, 525 |
| FaqI | GGGAC | 1 cut(s) | 148 |
| FatI | CATG | 4 cut(s) | 75, 229, 402, 523 |
| Fnu4HI | GCNGC | 1 cut(s) | 490 |
| Fsp4HI | GCNGC | 1 cut(s) | 490 |
| FspBI | CTAG | 1 cut(s) | 95 |
| GluI | GCNGC | 1 cut(s) | 490 |
| GsaI | CCCAGC | 1 cut(s) | 90 |
| HaeIII | GGCC | 1 cut(s) | 508 |
| HapII | CCGG | 3 cut(s) | 266, 275, 417 |
| Hin1II | CATG | 4 cut(s) | 79, 233, 406, 527 |
| HincII | GTYRAC | 1 cut(s) | 214 |
| HindII | GTYRAC | 1 cut(s) | 214 |
| HinfI | GANTC | 1 cut(s) | 128 |
| HpaII | CCGG | 3 cut(s) | 266, 275, 417 |
| Hpy166II | GTNNAC | 2 cut(s) | 10, 214 |
| Hpy188I | TCNGA | 4 cut(s) | 168, 281, 322, 514 |
| Hpy188III | TCNNGA | 5 cut(s) | 95, 125, 202, 346, 531 |
| Hpy8I | GTNNAC | 2 cut(s) | 10, 214 |
| HpyAV | CCTTC | 4 cut(s) | 72, 319, 378, 519 |
| HpyCH4III | ACNGT | 1 cut(s) | 211 |
| HpyCH4IV | ACGT | 1 cut(s) | 12 |
| HpyCH4V | TGCA | 3 cut(s) | 21, 233, 440 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 399, 489, 505, 514 |
| HpyF3I | CTNAG | 3 cut(s) | 117, 138, 458 |
| HpySE526I | ACGT | 1 cut(s) | 12 |
| Hsp92II | CATG | 4 cut(s) | 79, 233, 406, 527 |
| Kzo9I | GATC | 2 cut(s) | 30, 527 |
| MaeI | CTAG | 1 cut(s) | 95 |
| MaeII | ACGT | 1 cut(s) | 12 |
| MaeIII | GTNAC | 3 cut(s) | 125, 244, 295 |
| MalI | GATC | 2 cut(s) | 32, 529 |
| MboI | GATC | 2 cut(s) | 30, 527 |
| MboII | GAAGA | 2 cut(s) | 64, 366 |
| MfeI | CAATTG | 1 cut(s) | 441 |
| MflI | RGATCY | 1 cut(s) | 527 |
| MluCI | AATT | 1 cut(s) | 441 |
| MlyI | GAGTC | 1 cut(s) | 122 |
| MmeI | TCCRAC | 2 cut(s) | 123, 259 |
| MnlI | CCTC | 6 cut(s) | 46, 69, 251, 427, 432, 453 |
| MseI | TTAA | 2 cut(s) | 162, 237 |
| MslI | CAYNNNNRTG | 1 cut(s) | 26 |
| MspI | CCGG | 3 cut(s) | 266, 275, 417 |
| MunI | CAATTG | 1 cut(s) | 441 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 399, 489, 505, 514 |
| NdeII | GATC | 2 cut(s) | 30, 527 |
| NlaIII | CATG | 4 cut(s) | 79, 233, 406, 527 |
| NlaIV | GGNNCC | 1 cut(s) | 57 |
| NmuCI | GTSAC | 2 cut(s) | 125, 295 |
| NspI | RCATGY | 1 cut(s) | 233 |
| PkrI | GCNGC | 1 cut(s) | 491 |
| PleI | GAGTC | 1 cut(s) | 122 |
| PpsI | GAGTC | 1 cut(s) | 122 |
| PspFI | CCCAGC | 1 cut(s) | 86 |
| PspN4I | GGNNCC | 1 cut(s) | 57 |
| PspPI | GGNCC | 6 cut(s) | 260, 281, 302, 419, 476, 506 |
| PsuI | RGATCY | 1 cut(s) | 527 |
| RsaI | GTAC | 2 cut(s) | 15, 522 |
| RsaNI | GTAC | 2 cut(s) | 14, 521 |
| RseI | CAYNNNNRTG | 1 cut(s) | 26 |
| SaqAI | TTAA | 2 cut(s) | 162, 237 |
| SatI | GCNGC | 1 cut(s) | 490 |
| Sau3AI | GATC | 2 cut(s) | 30, 527 |
| Sau96I | GGNCC | 6 cut(s) | 260, 281, 302, 419, 476, 506 |
| SchI | GAGTC | 1 cut(s) | 122 |
| SetI | ASST | 8 cut(s) | 15, 57, 262, 330, 370, 424, 438, 464 |
| SinI | GGWCC | 5 cut(s) | 260, 281, 302, 419, 476 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 26 |
| SmlI | CTYRAG | 1 cut(s) | 423 |
| SmoI | CTYRAG | 1 cut(s) | 423 |
| Sse9I | AATT | 1 cut(s) | 441 |
| SsiI | CCGC | 3 cut(s) | 263, 490, 540 |
| SspI | AATATT | 1 cut(s) | 241 |
| SspMI | CTAG | 1 cut(s) | 95 |
| StyI | CCWWGG | 1 cut(s) | 494 |
| TaaI | ACNGT | 1 cut(s) | 211 |
| TaiI | ACGT | 1 cut(s) | 15 |
| TaqI | TCGA | 2 cut(s) | 33, 256 |
| TasI | AATT | 1 cut(s) | 441 |
| TatI | WGTACW | 1 cut(s) | 520 |
| TauI | GCSGC | 1 cut(s) | 492 |
| Tru1I | TTAA | 2 cut(s) | 162, 237 |
| Tru9I | TTAA | 2 cut(s) | 162, 237 |
| TscAI | CASTG | 2 cut(s) | 28, 304 |
| TseFI | GTSAC | 2 cut(s) | 125, 295 |
| Tsp45I | GTSAC | 2 cut(s) | 125, 295 |
| TspDTI | ATGAA | 2 cut(s) | 64, 360 |
| TspRI | CASTG | 2 cut(s) | 28, 304 |
| VpaK11BI | GGWCC | 5 cut(s) | 260, 281, 302, 419, 476 |
| XbaI | TCTAGA | 1 cut(s) | 94 |
| XceI | RCATGY | 1 cut(s) | 233 |
| XspI | CTAG | 1 cut(s) | 95 |