Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 14 - 135 | 2.7e-21 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 158 |
| AciI | CCGC | 2 cut(s) | 156, 275 |
| AcsI | RAATTY | 1 cut(s) | 351 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 23, 270, 271 |
| AgsI | TTSAA | 3 cut(s) | 163, 269, 527 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 328 |
| AjnI | CCWGG | 1 cut(s) | 516 |
| AluBI | AGCT | 3 cut(s) | 125, 398, 587 |
| AluI | AGCT | 3 cut(s) | 125, 398, 587 |
| Alw26I | GTCTC | 2 cut(s) | 22, 437 |
| ApoI | RAATTY | 1 cut(s) | 351 |
| AsuHPI | GGTGA | 2 cut(s) | 200, 392 |
| BccI | CCATC | 2 cut(s) | 41, 541 |
| BciT130I | CCWGG | 1 cut(s) | 518 |
| BcoDI | GTCTC | 2 cut(s) | 22, 437 |
| BfaI | CTAG | 1 cut(s) | 408 |
| Bme1390I | CCNGG | 1 cut(s) | 518 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 328 |
| BmrFI | CCNGG | 1 cut(s) | 518 |
| BmrI | ACTGGG | 1 cut(s) | 15 |
| BmuI | ACTGGG | 1 cut(s) | 15 |
| Bsa29I | ATCGAT | 1 cut(s) | 45 |
| BsaJI | CCNNGG | 1 cut(s) | 211 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 272, 302 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 23, 270, 271 |
| Bse1I | ACTGG | 1 cut(s) | 21 |
| BseBI | CCWGG | 1 cut(s) | 518 |
| BseCI | ATCGAT | 1 cut(s) | 45 |
| BseDI | CCNNGG | 1 cut(s) | 211 |
| BseGI | GGATG | 2 cut(s) | 77, 430 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 23, 270, 271 |
| BseMII | CTCAG | 1 cut(s) | 282 |
| BseNI | ACTGG | 1 cut(s) | 21 |
| BseRI | GAGGAG | 1 cut(s) | 293 |
| BseYI | CCCAGC | 1 cut(s) | 576 |
| Bsh1236I | CGCG | 1 cut(s) | 158 |
| BshVI | ATCGAT | 1 cut(s) | 45 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 23, 270, 271 |
| BsmAI | GTCTC | 2 cut(s) | 22, 437 |
| BsmI | GAATGC | 1 cut(s) | 566 |
| BspACI | CCGC | 2 cut(s) | 156, 275 |
| BspCNI | CTCAG | 1 cut(s) | 283 |
| BspDI | ATCGAT | 1 cut(s) | 45 |
| BspFNI | CGCG | 1 cut(s) | 158 |
| BspHI | TCATGA | 1 cut(s) | 460 |
| BsrI | ACTGG | 1 cut(s) | 21 |
| BssECI | CCNNGG | 1 cut(s) | 211 |
| BssT1I | CCWWGG | 1 cut(s) | 211 |
| Bst2UI | CCWGG | 1 cut(s) | 518 |
| Bst4CI | ACNGT | 1 cut(s) | 138 |
| BstDEI | CTNAG | 2 cut(s) | 200, 291 |
| BstF5I | GGATG | 2 cut(s) | 77, 430 |
| BstFNI | CGCG | 1 cut(s) | 158 |
| BstMAI | GTCTC | 2 cut(s) | 22, 437 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 155, 404 |
| BstNI | CCWGG | 1 cut(s) | 518 |
| BstNSI | RCATGY | 2 cut(s) | 149, 566 |
| BstSCI | CCNGG | 1 cut(s) | 516 |
| BstUI | CGCG | 1 cut(s) | 158 |
| Bsu15I | ATCGAT | 1 cut(s) | 45 |
| BsuTUI | ATCGAT | 1 cut(s) | 45 |
| BtsCI | GGATG | 2 cut(s) | 77, 430 |
| BtsIMutI | CAGTG | 1 cut(s) | 28 |
| CciI | TCATGA | 1 cut(s) | 460 |
| ClaI | ATCGAT | 1 cut(s) | 45 |
| CviAII | CATG | 3 cut(s) | 146, 461, 563 |
| CviJI | RGCY | 4 cut(s) | 125, 179, 398, 587 |
| CviKI_1 | RGCY | 4 cut(s) | 125, 179, 398, 587 |
| DdeI | CTNAG | 2 cut(s) | 200, 291 |
| DraI | TTTAAA | 1 cut(s) | 142 |
| DriI | GACNNNNNGTC | 1 cut(s) | 328 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 328 |
| EciI | GGCGGA | 1 cut(s) | 290 |
| Eco130I | CCWWGG | 1 cut(s) | 211 |
| EcoRI | GAATTC | 1 cut(s) | 351 |
| EcoRII | CCWGG | 1 cut(s) | 516 |
| EcoT14I | CCWWGG | 1 cut(s) | 211 |
| EcoT22I | ATGCAT | 1 cut(s) | 568 |
| ErhI | CCWWGG | 1 cut(s) | 211 |
| FaeI | CATG | 3 cut(s) | 149, 464, 566 |
| FaiI | YATR | 9 cut(s) | 107, 147, 167, 183, 327, 329, 392, 462, 564 |
| FatI | CATG | 3 cut(s) | 145, 460, 562 |
| FokI | GGATG | 2 cut(s) | 84, 437 |
| FspBI | CTAG | 1 cut(s) | 408 |
| GsaI | CCCAGC | 1 cut(s) | 580 |
| Hin1II | CATG | 3 cut(s) | 149, 464, 566 |
| HinfI | GANTC | 4 cut(s) | 62, 242, 445, 509 |
| HphI | GGTGA | 2 cut(s) | 200, 392 |
| Hpy188I | TCNGA | 2 cut(s) | 292, 514 |
| Hpy188III | TCNNGA | 1 cut(s) | 461 |
| HpyCH4III | ACNGT | 1 cut(s) | 138 |
| HpyCH4IV | ACGT | 2 cut(s) | 465, 522 |
| HpyCH4V | TGCA | 1 cut(s) | 566 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 155, 404 |
| HpyF3I | CTNAG | 2 cut(s) | 200, 291 |
| HpySE526I | ACGT | 2 cut(s) | 465, 522 |
| Hsp92II | CATG | 3 cut(s) | 149, 464, 566 |
| LmnI | GCTCC | 2 cut(s) | 122, 219 |
| LpnPI | CCDG | 7 cut(s) | 34, 174, 352, 462, 503, 530, 590 |
| MaeI | CTAG | 1 cut(s) | 408 |
| MaeII | ACGT | 2 cut(s) | 465, 522 |
| MaeIII | GTNAC | 1 cut(s) | 195 |
| MluCI | AATT | 1 cut(s) | 351 |
| MlyI | GAGTC | 2 cut(s) | 56, 439 |
| MmeI | TCCRAC | 2 cut(s) | 197, 402 |
| MnlI | CCTC | 7 cut(s) | 27, 169, 271, 274, 286, 408, 469 |
| Mph1103I | ATGCAT | 1 cut(s) | 568 |
| MseI | TTAA | 2 cut(s) | 141, 539 |
| MslI | CAYNNNNRTG | 1 cut(s) | 541 |
| MspR9I | CCNGG | 1 cut(s) | 518 |
| MssI | GTTTAAAC | 1 cut(s) | 142 |
| Mva1269I | GAATGC | 1 cut(s) | 566 |
| MvaI | CCWGG | 1 cut(s) | 518 |
| MvnI | CGCG | 1 cut(s) | 158 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 155, 404 |
| NlaIII | CATG | 3 cut(s) | 149, 464, 566 |
| NsiI | ATGCAT | 1 cut(s) | 568 |
| NspI | RCATGY | 2 cut(s) | 149, 566 |
| PagI | TCATGA | 1 cut(s) | 460 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 471 |
| PctI | GAATGC | 1 cut(s) | 566 |
| PfeI | GAWTC | 2 cut(s) | 242, 509 |
| PleI | GAGTC | 2 cut(s) | 56, 439 |
| PmeI | GTTTAAAC | 1 cut(s) | 142 |
| PpsI | GAGTC | 2 cut(s) | 56, 439 |
| Psp6I | CCWGG | 1 cut(s) | 516 |
| PspFI | CCCAGC | 1 cut(s) | 576 |
| PspGI | CCWGG | 1 cut(s) | 516 |
| RseI | CAYNNNNRTG | 1 cut(s) | 541 |
| SaqAI | TTAA | 2 cut(s) | 141, 539 |
| SchI | GAGTC | 2 cut(s) | 56, 439 |
| ScrFI | CCNGG | 1 cut(s) | 518 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 541 |
| Sse9I | AATT | 1 cut(s) | 351 |
| SsiI | CCGC | 2 cut(s) | 156, 275 |
| SspMI | CTAG | 1 cut(s) | 408 |
| StyD4I | CCNGG | 1 cut(s) | 516 |
| StyI | CCWWGG | 1 cut(s) | 211 |
| TaaI | ACNGT | 1 cut(s) | 138 |
| TaiI | ACGT | 2 cut(s) | 468, 525 |
| TaqI | TCGA | 3 cut(s) | 45, 301, 355 |
| TasI | AATT | 1 cut(s) | 351 |
| TfiI | GAWTC | 2 cut(s) | 242, 509 |
| Tru1I | TTAA | 2 cut(s) | 141, 539 |
| Tru9I | TTAA | 2 cut(s) | 141, 539 |
| TscAI | CASTG | 1 cut(s) | 28 |
| TspDTI | ATGAA | 3 cut(s) | 17, 449, 573 |
| TspRI | CASTG | 1 cut(s) | 28 |
| XapI | RAATTY | 1 cut(s) | 351 |
| XceI | RCATGY | 2 cut(s) | 149, 566 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 540 |
| XspI | CTAG | 1 cut(s) | 408 |
| Zsp2I | ATGCAT | 1 cut(s) | 568 |