ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 505 |
| AclI | AACGTT | 1 cut(s) | 363 |
| AclWI | GGATC | 2 cut(s) | 506, 519 |
| AcoI | YGGCCR | 1 cut(s) | 491 |
| AcsI | RAATTY | 1 cut(s) | 139 |
| AcuI | CTGAAG | 2 cut(s) | 171, 214 |
| AfaI | GTAC | 1 cut(s) | 36 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 188, 441 |
| AgsI | TTSAA | 3 cut(s) | 63, 337, 345 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 172 |
| AjnI | CCWGG | 1 cut(s) | 237 |
| AluBI | AGCT | 5 cut(s) | 185, 234, 287, 501, 550 |
| AluI | AGCT | 5 cut(s) | 185, 234, 287, 501, 550 |
| Alw21I | GWGCWC | 1 cut(s) | 387 |
| Alw26I | GTCTC | 1 cut(s) | 153 |
| Alw44I | GTGCAC | 1 cut(s) | 383 |
| AlwI | GGATC | 2 cut(s) | 506, 519 |
| AoxI | GGCC | 1 cut(s) | 491 |
| ApaLI | GTGCAC | 1 cut(s) | 383 |
| ApeKI | GCWGC | 2 cut(s) | 284, 498 |
| ApoI | RAATTY | 1 cut(s) | 139 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 227 |
| AspA2I | CCTAGG | 1 cut(s) | 130 |
| AsuC2I | CCSGG | 1 cut(s) | 495 |
| AsuHPI | GGTGA | 1 cut(s) | 245 |
| AvrII | CCTAGG | 1 cut(s) | 130 |
| BaeGI | GKGCMC | 1 cut(s) | 387 |
| BamHI | GGATCC | 1 cut(s) | 511 |
| Bbv12I | GWGCWC | 1 cut(s) | 387 |
| BbvI | GCAGC | 2 cut(s) | 296, 510 |
| BccI | CCATC | 1 cut(s) | 316 |
| BciT130I | CCWGG | 1 cut(s) | 239 |
| BcnI | CCSGG | 1 cut(s) | 495 |
| BcoDI | GTCTC | 1 cut(s) | 153 |
| BfaI | CTAG | 3 cut(s) | 38, 131, 288 |
| BglII | AGATCT | 1 cut(s) | 97 |
| BisI | GCNGC | 2 cut(s) | 285, 499 |
| BlnI | CCTAGG | 1 cut(s) | 130 |
| BlsI | GCNGC | 2 cut(s) | 286, 500 |
| BmcAI | AGTACT | 1 cut(s) | 36 |
| Bme1390I | CCNGG | 2 cut(s) | 239, 495 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 172 |
| BmiI | GGNNCC | 1 cut(s) | 513 |
| BmrFI | CCNGG | 2 cut(s) | 239, 495 |
| BmsI | GCATC | 2 cut(s) | 421, 444 |
| Bpu10I | CCTNAGC | 1 cut(s) | 125 |
| BpuMI | CCSGG | 1 cut(s) | 495 |
| BsaBI | GATNNNNATC | 3 cut(s) | 102, 298, 558 |
| BsaJI | CCNNGG | 3 cut(s) | 10, 130, 237 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 188, 441 |
| Bse8I | GATNNNNATC | 3 cut(s) | 102, 298, 558 |
| BseBI | CCWGG | 1 cut(s) | 239 |
| BseDI | CCNNGG | 3 cut(s) | 10, 130, 237 |
| BseJI | GATNNNNATC | 3 cut(s) | 102, 298, 558 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 188, 441 |
| BseMII | CTCAG | 1 cut(s) | 116 |
| BseSI | GKGCMC | 1 cut(s) | 387 |
| BseXI | GCAGC | 2 cut(s) | 296, 510 |
| BsgI | GTGCAG | 2 cut(s) | 303, 393 |
| Bsh1285I | CGRYCG | 1 cut(s) | 356 |
| BshFI | GGCC | 1 cut(s) | 493 |
| BsiEI | CGRYCG | 1 cut(s) | 356 |
| BsiHKAI | GWGCWC | 1 cut(s) | 387 |
| BsiSI | CCGG | 1 cut(s) | 494 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 188, 441 |
| BsmAI | GTCTC | 1 cut(s) | 153 |
| BsnI | GGCC | 1 cut(s) | 493 |
| Bsp1286I | GDGCHC | 1 cut(s) | 387 |
| Bsp143I | GATC | 4 cut(s) | 3, 97, 353, 511 |
| BspACI | CCGC | 1 cut(s) | 505 |
| BspANI | GGCC | 1 cut(s) | 493 |
| BspCNI | CTCAG | 1 cut(s) | 117 |
| BspLI | GGNNCC | 1 cut(s) | 513 |
| BspPI | GGATC | 2 cut(s) | 506, 519 |
| BssECI | CCNNGG | 3 cut(s) | 10, 130, 237 |
| BssMI | GATC | 4 cut(s) | 3, 97, 353, 511 |
| BssT1I | CCWWGG | 1 cut(s) | 130 |
| Bst2UI | CCWGG | 1 cut(s) | 239 |
| BstC8I | GCNNGC | 1 cut(s) | 548 |
| BstDEI | CTNAG | 1 cut(s) | 125 |
| BstDSI | CCRYGG | 1 cut(s) | 10 |
| BstEII | GGTNACC | 1 cut(s) | 251 |
| BstKTI | GATC | 4 cut(s) | 6, 100, 356, 514 |
| BstMAI | GTCTC | 1 cut(s) | 153 |
| BstMBI | GATC | 4 cut(s) | 3, 97, 353, 511 |
| BstMCI | CGRYCG | 1 cut(s) | 356 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 355, 416, 504, 547 |
| BstNI | CCWGG | 1 cut(s) | 239 |
| BstPI | GGTNACC | 1 cut(s) | 251 |
| BstSCI | CCNGG | 2 cut(s) | 237, 493 |
| BstSLI | GKGCMC | 1 cut(s) | 387 |
| BstV1I | GCAGC | 2 cut(s) | 296, 510 |
| BstX2I | RGATCY | 2 cut(s) | 97, 511 |
| BstYI | RGATCY | 2 cut(s) | 97, 511 |
| BsuRI | GGCC | 1 cut(s) | 493 |
| BtgI | CCRYGG | 1 cut(s) | 10 |
| BtgZI | GCGATG | 1 cut(s) | 87 |
| BtsIMutI | CAGTG | 1 cut(s) | 162 |
| Cac8I | GCNNGC | 1 cut(s) | 548 |
| Csp6I | GTAC | 1 cut(s) | 35 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 95, 130 |
| CviAII | CATG | 4 cut(s) | 217, 319, 451, 543 |
| CviQI | GTAC | 1 cut(s) | 35 |
| DdeI | CTNAG | 1 cut(s) | 125 |
| DpnI | GATC | 4 cut(s) | 5, 99, 355, 513 |
| DpnII | GATC | 4 cut(s) | 3, 97, 353, 511 |
| DraI | TTTAAA | 1 cut(s) | 558 |
| DriI | GACNNNNNGTC | 1 cut(s) | 172 |
| EaeI | YGGCCR | 1 cut(s) | 491 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 172 |
| Eco130I | CCWWGG | 1 cut(s) | 130 |
| Eco32I | GATATC | 1 cut(s) | 296 |
| Eco57I | CTGAAG | 2 cut(s) | 171, 214 |
| Eco91I | GGTNACC | 1 cut(s) | 251 |
| EcoO65I | GGTNACC | 1 cut(s) | 251 |
| EcoRII | CCWGG | 1 cut(s) | 237 |
| EcoRV | GATATC | 1 cut(s) | 296 |
| EcoT14I | CCWWGG | 1 cut(s) | 130 |
| ErhI | CCWWGG | 1 cut(s) | 130 |
| FaeI | CATG | 4 cut(s) | 220, 322, 454, 546 |
| FaiI | YATR | 5 cut(s) | 218, 320, 402, 452, 544 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 169, 201 |
| FatI | CATG | 4 cut(s) | 216, 318, 450, 542 |
| Fnu4HI | GCNGC | 2 cut(s) | 285, 499 |
| Fsp4HI | GCNGC | 2 cut(s) | 285, 499 |
| FspBI | CTAG | 3 cut(s) | 38, 131, 288 |
| GluI | GCNGC | 2 cut(s) | 285, 499 |
| HaeIII | GGCC | 1 cut(s) | 493 |
| HapII | CCGG | 1 cut(s) | 494 |
| Hin1II | CATG | 4 cut(s) | 220, 322, 454, 546 |
| HinfI | GANTC | 3 cut(s) | 167, 482, 567 |
| HpaII | CCGG | 1 cut(s) | 494 |
| HphI | GGTGA | 1 cut(s) | 245 |
| Hpy166II | GTNNAC | 1 cut(s) | 385 |
| Hpy188I | TCNGA | 2 cut(s) | 538, 572 |
| Hpy188III | TCNNGA | 1 cut(s) | 177 |
| Hpy8I | GTNNAC | 1 cut(s) | 385 |
| HpyAV | CCTTC | 2 cut(s) | 149, 343 |
| HpyCH4IV | ACGT | 1 cut(s) | 363 |
| HpyCH4V | TGCA | 5 cut(s) | 216, 284, 385, 410, 546 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 355, 416, 504, 547 |
| HpyF3I | CTNAG | 1 cut(s) | 125 |
| HpySE526I | ACGT | 1 cut(s) | 363 |
| Hsp92II | CATG | 4 cut(s) | 220, 322, 454, 546 |
| Kzo9I | GATC | 4 cut(s) | 3, 97, 353, 511 |
| LmnI | GCTCC | 1 cut(s) | 239 |
| LpnPI | CCDG | 8 cut(s) | 137, 174, 195, 217, 224, 251, 269, 507 |
| Lsp1109I | GCAGC | 2 cut(s) | 296, 510 |
| LweI | GCATC | 2 cut(s) | 421, 444 |
| MaeI | CTAG | 3 cut(s) | 38, 131, 288 |
| MaeII | ACGT | 1 cut(s) | 363 |
| MaeIII | GTNAC | 2 cut(s) | 206, 251 |
| MalI | GATC | 4 cut(s) | 5, 99, 355, 513 |
| MboI | GATC | 4 cut(s) | 3, 97, 353, 511 |
| MboII | GAAGA | 5 cut(s) | 98, 107, 220, 303, 554 |
| MflI | RGATCY | 2 cut(s) | 97, 511 |
| MhlI | GDGCHC | 1 cut(s) | 387 |
| MluCI | AATT | 2 cut(s) | 64, 139 |
| MlyI | GAGTC | 2 cut(s) | 161, 561 |
| MnlI | CCTC | 3 cut(s) | 213, 242, 272 |
| MroXI | GAANNNNTTC | 1 cut(s) | 227 |
| MseI | TTAA | 3 cut(s) | 102, 426, 557 |
| MspI | CCGG | 1 cut(s) | 494 |
| MspR9I | CCNGG | 2 cut(s) | 239, 495 |
| MvaI | CCWGG | 1 cut(s) | 239 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 355, 416, 504, 547 |
| NciI | CCSGG | 1 cut(s) | 495 |
| NdeII | GATC | 4 cut(s) | 3, 97, 353, 511 |
| NlaIII | CATG | 4 cut(s) | 220, 322, 454, 546 |
| NlaIV | GGNNCC | 1 cut(s) | 513 |
| NmuCI | GTSAC | 1 cut(s) | 251 |
| PdmI | GAANNNNTTC | 1 cut(s) | 227 |
| PfeI | GAWTC | 1 cut(s) | 482 |
| PkrI | GCNGC | 2 cut(s) | 286, 500 |
| Ple19I | CGATCG | 1 cut(s) | 356 |
| PleI | GAGTC | 2 cut(s) | 161, 561 |
| PpsI | GAGTC | 2 cut(s) | 161, 561 |
| Psp1406I | AACGTT | 1 cut(s) | 363 |
| Psp6I | CCWGG | 1 cut(s) | 237 |
| PspEI | GGTNACC | 1 cut(s) | 251 |
| PspGI | CCWGG | 1 cut(s) | 237 |
| PspN4I | GGNNCC | 1 cut(s) | 513 |
| PsuI | RGATCY | 2 cut(s) | 97, 511 |
| PvuI | CGATCG | 1 cut(s) | 356 |
| RsaI | GTAC | 1 cut(s) | 36 |
| RsaNI | GTAC | 1 cut(s) | 35 |
| SaqAI | TTAA | 3 cut(s) | 102, 426, 557 |
| SatI | GCNGC | 2 cut(s) | 285, 499 |
| Sau3AI | GATC | 4 cut(s) | 3, 97, 353, 511 |
| ScaI | AGTACT | 1 cut(s) | 36 |
| SchI | GAGTC | 2 cut(s) | 161, 561 |
| ScrFI | CCNGG | 2 cut(s) | 239, 495 |
| SduI | GDGCHC | 1 cut(s) | 387 |
| SfaNI | GCATC | 2 cut(s) | 421, 444 |
| SmiI | ATTTAAAT | 1 cut(s) | 558 |
| Sse9I | AATT | 2 cut(s) | 64, 139 |
| SsiI | CCGC | 1 cut(s) | 505 |
| SspMI | CTAG | 3 cut(s) | 38, 131, 288 |
| StyD4I | CCNGG | 2 cut(s) | 237, 493 |
| StyI | CCWWGG | 1 cut(s) | 130 |
| SwaI | ATTTAAAT | 1 cut(s) | 558 |
| TaiI | ACGT | 1 cut(s) | 366 |
| TaqI | TCGA | 4 cut(s) | 352, 485, 552, 565 |
| TasI | AATT | 2 cut(s) | 64, 139 |
| TatI | WGTACW | 1 cut(s) | 34 |
| TfiI | GAWTC | 1 cut(s) | 482 |
| Tru1I | TTAA | 3 cut(s) | 102, 426, 557 |
| Tru9I | TTAA | 3 cut(s) | 102, 426, 557 |
| TscAI | CASTG | 1 cut(s) | 169 |
| TseFI | GTSAC | 1 cut(s) | 251 |
| TseI | GCWGC | 2 cut(s) | 284, 498 |
| Tsp45I | GTSAC | 1 cut(s) | 251 |
| TspDTI | ATGAA | 2 cut(s) | 99, 417 |
| TspGWI | ACGGA | 1 cut(s) | 27 |
| TspRI | CASTG | 1 cut(s) | 169 |
| VneI | GTGCAC | 1 cut(s) | 383 |
| XapI | RAATTY | 1 cut(s) | 139 |
| XmaJI | CCTAGG | 1 cut(s) | 130 |
| XmnI | GAANNNNTTC | 1 cut(s) | 227 |
| XspI | CTAG | 3 cut(s) | 38, 131, 288 |
| ZrmI | AGTACT | 1 cut(s) | 36 |