ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 154 |
| AciI | CCGC | 3 cut(s) | 154, 269, 405 |
| AclWI | GGATC | 3 cut(s) | 323, 554, 817 |
| AcoI | YGGCCR | 1 cut(s) | 862 |
| AcsI | RAATTY | 1 cut(s) | 598 |
| AfaI | GTAC | 4 cut(s) | 284, 336, 728, 843 |
| AflIII | ACRYGT | 1 cut(s) | 857 |
| AgsI | TTSAA | 5 cut(s) | 125, 234, 374, 1117, 1205 |
| AjnI | CCWGG | 2 cut(s) | 496, 592 |
| AleI | CACNNNNGTG | 1 cut(s) | 1138 |
| AluBI | AGCT | 8 cut(s) | 300, 361, 484, 889, 1077, 1085, 1091, 1171 |
| AluI | AGCT | 8 cut(s) | 300, 361, 484, 889, 1077, 1085, 1091, 1171 |
| Alw21I | GWGCWC | 5 cut(s) | 196, 363, 526, 853, 1087 |
| Alw44I | GTGCAC | 1 cut(s) | 522 |
| AlwI | GGATC | 3 cut(s) | 323, 554, 817 |
| AoxI | GGCC | 3 cut(s) | 44, 775, 862 |
| ApaLI | GTGCAC | 1 cut(s) | 522 |
| ApeKI | GCWGC | 1 cut(s) | 300 |
| ApoI | RAATTY | 1 cut(s) | 598 |
| AsuC2I | CCSGG | 1 cut(s) | 1145 |
| AsuHPI | GGTGA | 2 cut(s) | 249, 586 |
| AsuII | TTCGAA | 1 cut(s) | 1191 |
| BaeGI | GKGCMC | 2 cut(s) | 526, 1145 |
| BanII | GRGCYC | 2 cut(s) | 363, 1087 |
| Bbv12I | GWGCWC | 5 cut(s) | 196, 363, 526, 853, 1087 |
| BbvI | GCAGC | 1 cut(s) | 287 |
| BccI | CCATC | 3 cut(s) | 678, 710, 1122 |
| BceAI | ACGGC | 1 cut(s) | 849 |
| BciT130I | CCWGG | 2 cut(s) | 498, 594 |
| BcnI | CCSGG | 1 cut(s) | 1145 |
| BfaI | CTAG | 1 cut(s) | 917 |
| BfmI | CTRYAG | 1 cut(s) | 111 |
| BisI | GCNGC | 1 cut(s) | 301 |
| BlsI | GCNGC | 1 cut(s) | 302 |
| Bme1390I | CCNGG | 3 cut(s) | 498, 594, 1145 |
| BmiI | GGNNCC | 1 cut(s) | 492 |
| BmrFI | CCNGG | 3 cut(s) | 498, 594, 1145 |
| BmrI | ACTGGG | 1 cut(s) | 756 |
| BmsI | GCATC | 1 cut(s) | 747 |
| BmuI | ACTGGG | 1 cut(s) | 756 |
| BpmI | CTGGAG | 2 cut(s) | 1071, 1151 |
| Bpu14I | TTCGAA | 1 cut(s) | 1191 |
| BpuEI | CTTGAG | 4 cut(s) | 506, 523, 535, 898 |
| BpuMI | CCSGG | 1 cut(s) | 1145 |
| BsaBI | GATNNNNATC | 1 cut(s) | 947 |
| BsaJI | CCNNGG | 4 cut(s) | 278, 811, 1009, 1196 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 53, 83 |
| Bse1I | ACTGG | 1 cut(s) | 751 |
| Bse3DI | GCAATG | 1 cut(s) | 310 |
| Bse8I | GATNNNNATC | 1 cut(s) | 947 |
| BseBI | CCWGG | 2 cut(s) | 498, 594 |
| BseDI | CCNNGG | 4 cut(s) | 278, 811, 1009, 1196 |
| BseGI | GGATG | 6 cut(s) | 619, 689, 703, 762, 1033, 1068 |
| BseJI | GATNNNNATC | 1 cut(s) | 947 |
| BseMI | GCAATG | 1 cut(s) | 310 |
| BseMII | CTCAG | 1 cut(s) | 74 |
| BseNI | ACTGG | 1 cut(s) | 751 |
| BseRI | GAGGAG | 1 cut(s) | 503 |
| BseSI | GKGCMC | 2 cut(s) | 526, 1145 |
| BseXI | GCAGC | 1 cut(s) | 287 |
| BshFI | GGCC | 3 cut(s) | 46, 777, 864 |
| BsiHKAI | GWGCWC | 5 cut(s) | 196, 363, 526, 853, 1087 |
| BsiSI | CCGG | 1 cut(s) | 1145 |
| BslFI | GGGAC | 1 cut(s) | 643 |
| BsmFI | GGGAC | 1 cut(s) | 643 |
| BsmI | GAATGC | 1 cut(s) | 369 |
| BsnI | GGCC | 3 cut(s) | 46, 777, 864 |
| Bsp119I | TTCGAA | 1 cut(s) | 1191 |
| Bsp1286I | GDGCHC | 6 cut(s) | 196, 363, 526, 853, 1087, 1145 |
| Bsp143I | GATC | 5 cut(s) | 328, 546, 822, 919, 1057 |
| Bsp19I | CCATGG | 1 cut(s) | 811 |
| BspACI | CCGC | 3 cut(s) | 154, 269, 405 |
| BspANI | GGCC | 3 cut(s) | 46, 777, 864 |
| BspCNI | CTCAG | 1 cut(s) | 75 |
| BspLI | GGNNCC | 1 cut(s) | 492 |
| BspPI | GGATC | 3 cut(s) | 323, 554, 817 |
| BspQI | GCTCTTC | 2 cut(s) | 811, 1098 |
| BspT104I | TTCGAA | 1 cut(s) | 1191 |
| BsrBI | CCGCTC | 1 cut(s) | 154 |
| BsrDI | GCAATG | 1 cut(s) | 310 |
| BsrI | ACTGG | 1 cut(s) | 751 |
| BssECI | CCNNGG | 4 cut(s) | 278, 811, 1009, 1196 |
| BssMI | GATC | 5 cut(s) | 328, 546, 822, 919, 1057 |
| BssT1I | CCWWGG | 3 cut(s) | 278, 811, 1009 |
| Bst2UI | CCWGG | 2 cut(s) | 498, 594 |
| Bst4CI | ACNGT | 5 cut(s) | 112, 147, 198, 521, 571 |
| Bst6I | CTCTTC | 2 cut(s) | 811, 1098 |
| BstBI | TTCGAA | 1 cut(s) | 1191 |
| BstC8I | GCNNGC | 3 cut(s) | 181, 802, 1042 |
| BstDEI | CTNAG | 3 cut(s) | 83, 338, 582 |
| BstDSI | CCRYGG | 1 cut(s) | 811 |
| BstF5I | GGATG | 6 cut(s) | 619, 689, 703, 762, 1033, 1068 |
| BstKTI | GATC | 5 cut(s) | 331, 549, 825, 922, 1060 |
| BstMBI | GATC | 5 cut(s) | 328, 546, 822, 919, 1057 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 490, 536, 1097 |
| BstNI | CCWGG | 2 cut(s) | 498, 594 |
| BstNSI | RCATGY | 2 cut(s) | 861, 1111 |
| BstSCI | CCNGG | 3 cut(s) | 496, 592, 1143 |
| BstSFI | CTRYAG | 1 cut(s) | 111 |
| BstSLI | GKGCMC | 2 cut(s) | 526, 1145 |
| BstV1I | GCAGC | 1 cut(s) | 287 |
| BstX2I | RGATCY | 1 cut(s) | 546 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1016, 1079 |
| BstYI | RGATCY | 1 cut(s) | 546 |
| BsuRI | GGCC | 3 cut(s) | 46, 777, 864 |
| BtgI | CCRYGG | 1 cut(s) | 811 |
| BtsCI | GGATG | 6 cut(s) | 619, 689, 703, 762, 1033, 1068 |
| BtsI | GCAGTG | 1 cut(s) | 1051 |
| BtsIMutI | CAGTG | 2 cut(s) | 576, 1051 |
| Cac8I | GCNNGC | 3 cut(s) | 181, 802, 1042 |
| Csp6I | GTAC | 4 cut(s) | 283, 335, 727, 842 |
| CviAII | CATG | 6 cut(s) | 18, 402, 773, 812, 858, 1108 |
| CviQI | GTAC | 4 cut(s) | 283, 335, 727, 842 |
| DdeI | CTNAG | 3 cut(s) | 83, 338, 582 |
| DpnI | GATC | 5 cut(s) | 330, 548, 824, 921, 1059 |
| DpnII | GATC | 5 cut(s) | 328, 546, 822, 919, 1057 |
| EaeI | YGGCCR | 1 cut(s) | 862 |
| Eam1104I | CTCTTC | 2 cut(s) | 811, 1098 |
| EarI | CTCTTC | 2 cut(s) | 811, 1098 |
| Ecl136II | GAGCTC | 2 cut(s) | 361, 1085 |
| Eco130I | CCWWGG | 3 cut(s) | 278, 811, 1009 |
| Eco24I | GRGCYC | 2 cut(s) | 363, 1087 |
| Eco53kI | GAGCTC | 2 cut(s) | 361, 1085 |
| EcoICRI | GAGCTC | 2 cut(s) | 361, 1085 |
| EcoRII | CCWGG | 2 cut(s) | 496, 592 |
| EcoT14I | CCWWGG | 3 cut(s) | 278, 811, 1009 |
| EcoT22I | ATGCAT | 1 cut(s) | 325 |
| EcoT38I | GRGCYC | 2 cut(s) | 363, 1087 |
| ErhI | CCWWGG | 3 cut(s) | 278, 811, 1009 |
| FaeI | CATG | 6 cut(s) | 21, 405, 776, 815, 861, 1111 |
| FaqI | GGGAC | 1 cut(s) | 643 |
| FatI | CATG | 6 cut(s) | 17, 401, 772, 811, 857, 1107 |
| Fnu4HI | GCNGC | 1 cut(s) | 301 |
| FokI | GGATG | 6 cut(s) | 626, 696, 710, 769, 1040, 1055 |
| FriOI | GRGCYC | 2 cut(s) | 363, 1087 |
| Fsp4HI | GCNGC | 1 cut(s) | 301 |
| FspBI | CTAG | 1 cut(s) | 917 |
| GluI | GCNGC | 1 cut(s) | 301 |
| GsuI | CTGGAG | 2 cut(s) | 1071, 1151 |
| HaeIII | GGCC | 3 cut(s) | 46, 777, 864 |
| HapII | CCGG | 1 cut(s) | 1145 |
| Hin1II | CATG | 6 cut(s) | 21, 405, 776, 815, 861, 1111 |
| HindIII | AAGCTT | 1 cut(s) | 482 |
| HinfI | GANTC | 6 cut(s) | 68, 97, 125, 635, 766, 955 |
| HpaII | CCGG | 1 cut(s) | 1145 |
| HphI | GGTGA | 2 cut(s) | 249, 586 |
| Hpy166II | GTNNAC | 3 cut(s) | 294, 524, 625 |
| Hpy188I | TCNGA | 4 cut(s) | 191, 514, 640, 678 |
| Hpy188III | TCNNGA | 6 cut(s) | 101, 137, 552, 733, 952, 1072 |
| Hpy8I | GTNNAC | 3 cut(s) | 294, 524, 625 |
| HpyAV | CCTTC | 3 cut(s) | 86, 143, 961 |
| HpyCH4III | ACNGT | 5 cut(s) | 112, 147, 198, 521, 571 |
| HpyCH4IV | ACGT | 2 cut(s) | 14, 450 |
| HpyCH4V | TGCA | 9 cut(s) | 77, 207, 303, 323, 369, 456, 524, 530, 1111 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 490, 536, 1097 |
| HpyF3I | CTNAG | 3 cut(s) | 83, 338, 582 |
| HpySE526I | ACGT | 2 cut(s) | 14, 450 |
| Hsp92II | CATG | 6 cut(s) | 21, 405, 776, 815, 861, 1111 |
| Kzo9I | GATC | 5 cut(s) | 328, 546, 822, 919, 1057 |
| LguI | GCTCTTC | 2 cut(s) | 811, 1098 |
| LmnI | GCTCC | 5 cut(s) | 151, 366, 490, 1082, 1090 |
| Lsp1109I | GCAGC | 1 cut(s) | 287 |
| LweI | GCATC | 1 cut(s) | 747 |
| MaeI | CTAG | 1 cut(s) | 917 |
| MaeII | ACGT | 2 cut(s) | 14, 450 |
| MaeIII | GTNAC | 4 cut(s) | 106, 664, 1131, 1147 |
| MalI | GATC | 5 cut(s) | 330, 548, 824, 921, 1059 |
| MbiI | CCGCTC | 1 cut(s) | 154 |
| MboI | GATC | 5 cut(s) | 328, 546, 822, 919, 1057 |
| MboII | GAAGA | 3 cut(s) | 20, 798, 1085 |
| MfeI | CAATTG | 3 cut(s) | 174, 312, 390 |
| MflI | RGATCY | 1 cut(s) | 546 |
| MhlI | GDGCHC | 6 cut(s) | 196, 363, 526, 853, 1087, 1145 |
| MlyI | GAGTC | 1 cut(s) | 77 |
| MmeI | TCCRAC | 1 cut(s) | 129 |
| Mph1103I | ATGCAT | 1 cut(s) | 325 |
| MseI | TTAA | 1 cut(s) | 936 |
| MslI | CAYNNNNRTG | 2 cut(s) | 630, 1138 |
| MspI | CCGG | 1 cut(s) | 1145 |
| MspR9I | CCNGG | 3 cut(s) | 498, 594, 1145 |
| MunI | CAATTG | 3 cut(s) | 174, 312, 390 |
| Mva1269I | GAATGC | 1 cut(s) | 369 |
| MvaI | CCWGG | 2 cut(s) | 498, 594 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 490, 536, 1097 |
| NciI | CCSGG | 1 cut(s) | 1145 |
| NcoI | CCATGG | 1 cut(s) | 811 |
| NdeII | GATC | 5 cut(s) | 328, 546, 822, 919, 1057 |
| NlaIII | CATG | 6 cut(s) | 21, 405, 776, 815, 861, 1111 |
| NlaIV | GGNNCC | 1 cut(s) | 492 |
| NmeAIII | GCCGAG | 1 cut(s) | 1177 |
| NmuCI | GTSAC | 2 cut(s) | 664, 1131 |
| NsiI | ATGCAT | 1 cut(s) | 325 |
| NspI | RCATGY | 2 cut(s) | 861, 1111 |
| NspV | TTCGAA | 1 cut(s) | 1191 |
| OliI | CACNNNNGTG | 1 cut(s) | 1138 |
| PciI | ACATGT | 1 cut(s) | 857 |
| PciSI | GCTCTTC | 2 cut(s) | 811, 1098 |
| PctI | GAATGC | 1 cut(s) | 369 |
| PfeI | GAWTC | 5 cut(s) | 97, 125, 635, 766, 955 |
| PfoI | TCCNGGA | 1 cut(s) | 592 |
| PkrI | GCNGC | 1 cut(s) | 302 |
| PleI | GAGTC | 1 cut(s) | 76 |
| PpsI | GAGTC | 1 cut(s) | 76 |
| PscI | ACATGT | 1 cut(s) | 857 |
| Psp124BI | GAGCTC | 2 cut(s) | 363, 1087 |
| Psp6I | CCWGG | 2 cut(s) | 496, 592 |
| PspGI | CCWGG | 2 cut(s) | 496, 592 |
| PspN4I | GGNNCC | 1 cut(s) | 492 |
| PsuI | RGATCY | 1 cut(s) | 546 |
| RsaI | GTAC | 4 cut(s) | 284, 336, 728, 843 |
| RsaNI | GTAC | 4 cut(s) | 283, 335, 727, 842 |
| RseI | CAYNNNNRTG | 2 cut(s) | 630, 1138 |
| SacI | GAGCTC | 2 cut(s) | 363, 1087 |
| SapI | GCTCTTC | 2 cut(s) | 811, 1098 |
| SaqAI | TTAA | 1 cut(s) | 936 |
| SatI | GCNGC | 1 cut(s) | 301 |
| Sau3AI | GATC | 5 cut(s) | 328, 546, 822, 919, 1057 |
| SchI | GAGTC | 1 cut(s) | 77 |
| ScrFI | CCNGG | 3 cut(s) | 498, 594, 1145 |
| SduI | GDGCHC | 6 cut(s) | 196, 363, 526, 853, 1087, 1145 |
| SfaNI | GCATC | 1 cut(s) | 747 |
| SfcI | CTRYAG | 1 cut(s) | 111 |
| SfuI | TTCGAA | 1 cut(s) | 1191 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 630, 1138 |
| SmlI | CTYRAG | 4 cut(s) | 485, 502, 550, 877 |
| SmoI | CTYRAG | 4 cut(s) | 485, 502, 550, 877 |
| SsiI | CCGC | 3 cut(s) | 154, 269, 405 |
| SspMI | CTAG | 1 cut(s) | 917 |
| SstI | GAGCTC | 2 cut(s) | 363, 1087 |
| StyD4I | CCNGG | 3 cut(s) | 496, 592, 1143 |
| StyI | CCWWGG | 3 cut(s) | 278, 811, 1009 |
| TaaI | ACNGT | 5 cut(s) | 112, 147, 198, 521, 571 |
| TaiI | ACGT | 2 cut(s) | 17, 453 |
| TaqI | TCGA | 1 cut(s) | 1191 |
| TatI | WGTACW | 2 cut(s) | 334, 726 |
| TfiI | GAWTC | 5 cut(s) | 97, 125, 635, 766, 955 |
| Tru1I | TTAA | 1 cut(s) | 936 |
| Tru9I | TTAA | 1 cut(s) | 936 |
| TscAI | CASTG | 2 cut(s) | 576, 1051 |
| TseFI | GTSAC | 2 cut(s) | 664, 1131 |
| TseI | GCWGC | 1 cut(s) | 300 |
| Tsp45I | GTSAC | 2 cut(s) | 664, 1131 |
| TspDTI | ATGAA | 5 cut(s) | 105, 156, 321, 823, 887 |
| TspGWI | ACGGA | 1 cut(s) | 815 |
| TspRI | CASTG | 2 cut(s) | 576, 1051 |
| VneI | GTGCAC | 1 cut(s) | 522 |
| XapI | RAATTY | 1 cut(s) | 598 |
| XceI | RCATGY | 2 cut(s) | 861, 1111 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1175 |
| XspI | CTAG | 1 cut(s) | 917 |
| Zsp2I | ATGCAT | 1 cut(s) | 325 |