Reverse transcriptase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TPR_PATROL1 | PF25761 | 719 - 1109 | 1.9e-126 | PATROL1-like, TPR repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 1388, 1632 |
| Acc36I | ACCTGC | 2 cut(s) | 1388, 1632 |
| AccB1I | GGYRCC | 1 cut(s) | 322 |
| AccI | GTMKAC | 1 cut(s) | 2540 |
| AccII | CGCG | 4 cut(s) | 45, 419, 618, 3129 |
| AciI | CCGC | 7 cut(s) | 43, 116, 350, 616, 1490, 2257, 2665 |
| AclWI | GGATC | 5 cut(s) | 144, 1805, 2201, 2943, 3310 |
| AcsI | RAATTY | 3 cut(s) | 941, 1431, 2266 |
| AcuI | CTGAAG | 3 cut(s) | 1728, 1878, 2328 |
| AfaI | GTAC | 1 cut(s) | 2060 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1112, 1187, 1991 |
| AflII | CTTAAG | 1 cut(s) | 2324 |
| AflIII | ACRYGT | 1 cut(s) | 3127 |
| AgeI | ACCGGT | 1 cut(s) | 1112 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 522, 703 |
| AhlI | ACTAGT | 1 cut(s) | 901 |
| AjiI | CACGTC | 1 cut(s) | 2404 |
| AjnI | CCWGG | 2 cut(s) | 772, 3201 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2326, 2358 |
| AleI | CACNNNNGTG | 1 cut(s) | 3273 |
| Alw21I | GWGCWC | 3 cut(s) | 168, 772, 1329 |
| AlwI | GGATC | 5 cut(s) | 144, 1805, 2201, 2943, 3310 |
| Ama87I | CYCGRG | 4 cut(s) | 110, 1185, 3009, 3165 |
| AoxI | GGCC | 5 cut(s) | 1178, 1890, 3001, 3199, 3285 |
| ApaI | GGGCCC | 1 cut(s) | 3005 |
| ApeKI | GCWGC | 7 cut(s) | 557, 656, 853, 1258, 1712, 2039, 2756 |
| ApoI | RAATTY | 3 cut(s) | 941, 1431, 2266 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 281, 313, 2300, 2332, 3250, 3282 |
| AseI | ATTAAT | 1 cut(s) | 2550 |
| AsiGI | ACCGGT | 1 cut(s) | 1112 |
| AspA2I | CCTAGG | 1 cut(s) | 2516 |
| AspS9I | GGNCC | 5 cut(s) | 1487, 2236, 3001, 3002, 3058 |
| AsuC2I | CCSGG | 4 cut(s) | 111, 112, 235, 3272 |
| AsuHPI | GGTGA | 8 cut(s) | 281, 1127, 1202, 1214, 2238, 2773, 3260, 3287 |
| AsuII | TTCGAA | 1 cut(s) | 2557 |
| AvaI | CYCGRG | 4 cut(s) | 110, 1185, 3009, 3165 |
| AvaII | GGWCC | 3 cut(s) | 1487, 2236, 3058 |
| AvrII | CCTAGG | 1 cut(s) | 2516 |
| BaeGI | GKGCMC | 3 cut(s) | 325, 2451, 3005 |
| BanI | GGYRCC | 1 cut(s) | 322 |
| BanII | GRGCYC | 2 cut(s) | 1329, 3005 |
| BauI | CACGAG | 2 cut(s) | 362, 3099 |
| BbsI | GAAGAC | 2 cut(s) | 1264, 2334 |
| Bbv12I | GWGCWC | 3 cut(s) | 168, 772, 1329 |
| BbvCI | CCTCAGC | 1 cut(s) | 1635 |
| BbvI | GCAGC | 7 cut(s) | 544, 643, 840, 1245, 1724, 2026, 2743 |
| BceAI | ACGGC | 1 cut(s) | 1905 |
| BcgI | CGANNNNNNTGC | 3 cut(s) | 30, 1116, 1150 |
| BciT130I | CCWGG | 2 cut(s) | 774, 3203 |
| BcnI | CCSGG | 4 cut(s) | 111, 112, 235, 3272 |
| BcuI | ACTAGT | 1 cut(s) | 901 |
| BfmI | CTRYAG | 5 cut(s) | 474, 657, 2100, 2760, 3209 |
| BfrI | CTTAAG | 1 cut(s) | 2324 |
| BfuAI | ACCTGC | 2 cut(s) | 1388, 1632 |
| BglII | AGATCT | 1 cut(s) | 1142 |
| BisI | GCNGC | 9 cut(s) | 43, 558, 657, 854, 1259, 1713, 2040, 2258, 2757 |
| BlnI | CCTAGG | 1 cut(s) | 2516 |
| BlpI | GCTNAGC | 1 cut(s) | 2001 |
| BlsI | GCNGC | 9 cut(s) | 44, 559, 658, 855, 1260, 1714, 2041, 2259, 2758 |
| Bme1390I | CCNGG | 6 cut(s) | 111, 112, 235, 774, 3203, 3272 |
| Bme18I | GGWCC | 3 cut(s) | 1487, 2236, 3058 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 522, 703 |
| BmeT110I | CYCGRG | 4 cut(s) | 110, 1185, 3009, 3165 |
| BmgBI | CACGTC | 1 cut(s) | 2404 |
| BmgT120I | GGNCC | 5 cut(s) | 1487, 2236, 3001, 3002, 3058 |
| BmrFI | CCNGG | 6 cut(s) | 111, 112, 235, 774, 3203, 3272 |
| BmrI | ACTGGG | 1 cut(s) | 1225 |
| BmsI | GCATC | 6 cut(s) | 544, 883, 1710, 1930, 2014, 2154 |
| BmuI | ACTGGG | 1 cut(s) | 1225 |
| BpiI | GAAGAC | 2 cut(s) | 1264, 2334 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 745, 777, 1168, 1200, 2096, 2128 |
| BpmI | CTGGAG | 2 cut(s) | 396, 1718 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1635 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2001 |
| Bpu14I | TTCGAA | 1 cut(s) | 2557 |
| BpuEI | CTTGAG | 4 cut(s) | 1159, 1343, 2072, 3047 |
| BpuMI | CCSGG | 4 cut(s) | 111, 112, 235, 3272 |
| BsaBI | GATNNNNATC | 3 cut(s) | 135, 1227, 1746 |
| BsaI | GGTCTC | 4 cut(s) | 671, 1358, 1817, 1856 |
| BsaJI | CCNNGG | 7 cut(s) | 110, 111, 773, 2013, 2424, 2516, 3271 |
| BsaWI | WCCGGW | 2 cut(s) | 1112, 2783 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 337, 367 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1112, 1187, 1991 |
| Bse118I | RCCGGY | 1 cut(s) | 1112 |
| Bse1I | ACTGG | 7 cut(s) | 78, 271, 413, 1204, 1220, 1419, 2973 |
| Bse3DI | GCAATG | 2 cut(s) | 834, 1847 |
| Bse8I | GATNNNNATC | 3 cut(s) | 135, 1227, 1746 |
| BseBI | CCWGG | 2 cut(s) | 774, 3203 |
| BseDI | CCNNGG | 7 cut(s) | 110, 111, 773, 2013, 2424, 2516, 3271 |
| BseGI | GGATG | 8 cut(s) | 505, 783, 898, 1921, 1943, 2023, 2977, 3005 |
| BseJI | GATNNNNATC | 3 cut(s) | 135, 1227, 1746 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1112, 1187, 1991 |
| BseMI | GCAATG | 2 cut(s) | 834, 1847 |
| BseNI | ACTGG | 7 cut(s) | 78, 271, 413, 1204, 1220, 1419, 2973 |
| BseRI | GAGGAG | 4 cut(s) | 300, 1013, 2312, 3117 |
| BseSI | GKGCMC | 3 cut(s) | 325, 2451, 3005 |
| BseXI | GCAGC | 7 cut(s) | 544, 643, 840, 1245, 1724, 2026, 2743 |
| BseYI | CCCAGC | 1 cut(s) | 2477 |
| BsgI | GTGCAG | 1 cut(s) | 1610 |
| Bsh1236I | CGCG | 4 cut(s) | 45, 419, 618, 3129 |
| BshFI | GGCC | 5 cut(s) | 1180, 1892, 3003, 3201, 3287 |
| BshNI | GGYRCC | 1 cut(s) | 322 |
| BshTI | ACCGGT | 1 cut(s) | 1112 |
| BsiHKAI | GWGCWC | 3 cut(s) | 168, 772, 1329 |
| BsiHKCI | CYCGRG | 4 cut(s) | 110, 1185, 3009, 3165 |
| BsiSI | CCGG | 5 cut(s) | 111, 234, 1113, 2784, 3271 |
| BslFI | GGGAC | 2 cut(s) | 1500, 2249 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1112, 1187, 1991 |
| BsmFI | GGGAC | 2 cut(s) | 1500, 2249 |
| BsmI | GAATGC | 5 cut(s) | 195, 865, 1139, 1519, 1789 |
| BsnI | GGCC | 5 cut(s) | 1180, 1892, 3003, 3201, 3287 |
| Bso31I | GGTCTC | 4 cut(s) | 671, 1358, 1817, 1856 |
| BsoBI | CYCGRG | 4 cut(s) | 110, 1185, 3009, 3165 |
| Bsp119I | TTCGAA | 1 cut(s) | 2557 |
| Bsp120I | GGGCCC | 1 cut(s) | 3001 |
| Bsp1286I | GDGCHC | 6 cut(s) | 168, 325, 772, 1329, 2451, 3005 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2001 |
| BspACI | CCGC | 7 cut(s) | 43, 116, 350, 616, 1490, 2257, 2665 |
| BspANI | GGCC | 5 cut(s) | 1180, 1892, 3003, 3201, 3287 |
| BspFNI | CGCG | 4 cut(s) | 45, 419, 618, 3129 |
| BspHI | TCATGA | 1 cut(s) | 223 |
| BspMAI | CTGCAG | 3 cut(s) | 661, 2104, 3213 |
| BspMI | ACCTGC | 2 cut(s) | 1388, 1632 |
| BspPI | GGATC | 5 cut(s) | 144, 1805, 2201, 2943, 3310 |
| BspT104I | TTCGAA | 1 cut(s) | 2557 |
| BspT107I | GGYRCC | 1 cut(s) | 322 |
| BspTI | CTTAAG | 1 cut(s) | 2324 |
| BspTNI | GGTCTC | 4 cut(s) | 671, 1358, 1817, 1856 |
| BsrDI | GCAATG | 2 cut(s) | 834, 1847 |
| BsrFI | RCCGGY | 1 cut(s) | 1112 |
| BsrI | ACTGG | 7 cut(s) | 78, 271, 413, 1204, 1220, 1419, 2973 |
| BssAI | RCCGGY | 1 cut(s) | 1112 |
| BssECI | CCNNGG | 7 cut(s) | 110, 111, 773, 2013, 2424, 2516, 3271 |
| BssSI | CACGAG | 2 cut(s) | 362, 3099 |
| BssT1I | CCWWGG | 2 cut(s) | 2424, 2516 |
| Bst2BI | CACGAG | 2 cut(s) | 362, 3099 |
| Bst2UI | CCWGG | 2 cut(s) | 774, 3203 |
| Bst6I | CTCTTC | 3 cut(s) | 1104, 1152, 1854 |
| BstAFI | CTTAAG | 1 cut(s) | 2324 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1853 |
| BstBI | TTCGAA | 1 cut(s) | 2557 |
| BstC8I | GCNNGC | 2 cut(s) | 1182, 1854 |
| BstEII | GGTNACC | 1 cut(s) | 1544 |
| BstF5I | GGATG | 8 cut(s) | 505, 783, 898, 1921, 1943, 2023, 2977, 3005 |
| BstFNI | CGCG | 4 cut(s) | 45, 419, 618, 3129 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 58, 566, 656, 979, 1169, 1853 |
| BstNI | CCWGG | 2 cut(s) | 774, 3203 |
| BstNSI | RCATGY | 2 cut(s) | 1412, 1445 |
| BstPI | GGTNACC | 1 cut(s) | 1544 |
| BstSCI | CCNGG | 6 cut(s) | 109, 110, 233, 772, 3201, 3270 |
| BstSFI | CTRYAG | 5 cut(s) | 474, 657, 2100, 2760, 3209 |
| BstSLI | GKGCMC | 3 cut(s) | 325, 2451, 3005 |
| BstUI | CGCG | 4 cut(s) | 45, 419, 618, 3129 |
| BstV1I | GCAGC | 7 cut(s) | 544, 643, 840, 1245, 1724, 2026, 2743 |
| BstV2I | GAAGAC | 2 cut(s) | 1264, 2334 |
| BstX2I | RGATCY | 5 cut(s) | 136, 1142, 1797, 2193, 3315 |
| BstYI | RGATCY | 5 cut(s) | 136, 1142, 1797, 2193, 3315 |
| BsuRI | GGCC | 5 cut(s) | 1180, 1892, 3003, 3201, 3287 |
| BtgZI | GCGATG | 3 cut(s) | 1688, 2659, 3042 |
| BtrI | CACGTC | 1 cut(s) | 2404 |
| BtsCI | GGATG | 8 cut(s) | 505, 783, 898, 1921, 1943, 2023, 2977, 3005 |
| BtsI | GCAGTG | 2 cut(s) | 1017, 2877 |
| BtsIMutI | CAGTG | 8 cut(s) | 157, 1017, 1213, 1273, 1426, 1737, 2877, 2966 |
| BveI | ACCTGC | 2 cut(s) | 1388, 1632 |
| Cac8I | GCNNGC | 2 cut(s) | 1182, 1854 |
| CciI | TCATGA | 1 cut(s) | 223 |
| Cfr10I | RCCGGY | 1 cut(s) | 1112 |
| Cfr13I | GGNCC | 5 cut(s) | 1487, 2236, 3001, 3002, 3058 |
| Cfr9I | CCCGGG | 1 cut(s) | 110 |
| CseI | GACGC | 1 cut(s) | 408 |
| Csp6I | GTAC | 1 cut(s) | 2059 |
| CspAI | ACCGGT | 1 cut(s) | 1112 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2213, 2248 |
| CviAII | CATG | 9 cut(s) | 224, 799, 1341, 1389, 1409, 1442, 2062, 2261, 2713 |
| CviQI | GTAC | 1 cut(s) | 2059 |
| DraI | TTTAAA | 1 cut(s) | 589 |
| DriI | GACNNNNNGTC | 2 cut(s) | 522, 703 |
| Eam1104I | CTCTTC | 3 cut(s) | 1104, 1152, 1854 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 522, 703 |
| EarI | CTCTTC | 3 cut(s) | 1104, 1152, 1854 |
| Ecl136II | GAGCTC | 1 cut(s) | 1327 |
| Eco130I | CCWWGG | 2 cut(s) | 2424, 2516 |
| Eco147I | AGGCCT | 2 cut(s) | 1180, 3287 |
| Eco24I | GRGCYC | 2 cut(s) | 1329, 3005 |
| Eco31I | GGTCTC | 4 cut(s) | 671, 1358, 1817, 1856 |
| Eco32I | GATATC | 1 cut(s) | 819 |
| Eco47I | GGWCC | 3 cut(s) | 1487, 2236, 3058 |
| Eco53kI | GAGCTC | 1 cut(s) | 1327 |
| Eco57I | CTGAAG | 3 cut(s) | 1728, 1878, 2328 |
| Eco88I | CYCGRG | 4 cut(s) | 110, 1185, 3009, 3165 |
| Eco91I | GGTNACC | 1 cut(s) | 1544 |
| EcoICRI | GAGCTC | 1 cut(s) | 1327 |
| EcoO109I | RGGNCCY | 3 cut(s) | 2236, 3001, 3058 |
| EcoO65I | GGTNACC | 1 cut(s) | 1544 |
| EcoRI | GAATTC | 1 cut(s) | 2266 |
| EcoRII | CCWGG | 2 cut(s) | 772, 3201 |
| EcoRV | GATATC | 1 cut(s) | 819 |
| EcoT14I | CCWWGG | 2 cut(s) | 2424, 2516 |
| EcoT22I | ATGCAT | 3 cut(s) | 1390, 1789, 2383 |
| EcoT38I | GRGCYC | 2 cut(s) | 1329, 3005 |
| ErhI | CCWWGG | 2 cut(s) | 2424, 2516 |
| FaeI | CATG | 9 cut(s) | 227, 802, 1344, 1392, 1412, 1445, 2065, 2264, 2716 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1305, 1337, 2417, 2449, 2672, 2704 |
| FaqI | GGGAC | 2 cut(s) | 1500, 2249 |
| FatI | CATG | 9 cut(s) | 223, 798, 1340, 1388, 1408, 1441, 2061, 2260, 2712 |
| FauI | CCCGC | 1 cut(s) | 2672 |
| FauNDI | CATATG | 1 cut(s) | 628 |
| FblI | GTMKAC | 1 cut(s) | 2540 |
| Fnu4HI | GCNGC | 9 cut(s) | 43, 558, 657, 854, 1259, 1713, 2040, 2258, 2757 |
| FokI | GGATG | 8 cut(s) | 512, 790, 905, 1908, 1930, 2030, 2984, 2992 |
| FriOI | GRGCYC | 2 cut(s) | 1329, 3005 |
| Fsp4HI | GCNGC | 9 cut(s) | 43, 558, 657, 854, 1259, 1713, 2040, 2258, 2757 |
| GluI | GCNGC | 9 cut(s) | 43, 558, 657, 854, 1259, 1713, 2040, 2258, 2757 |
| GsaI | CCCAGC | 1 cut(s) | 2481 |
| GsuI | CTGGAG | 2 cut(s) | 396, 1718 |
| HaeIII | GGCC | 5 cut(s) | 1180, 1892, 3003, 3201, 3287 |
| HapII | CCGG | 5 cut(s) | 111, 234, 1113, 2784, 3271 |
| HgaI | GACGC | 1 cut(s) | 408 |
| Hin1II | CATG | 9 cut(s) | 227, 802, 1344, 1392, 1412, 1445, 2065, 2264, 2716 |
| HincII | GTYRAC | 4 cut(s) | 1338, 2308, 2374, 2903 |
| HindII | GTYRAC | 4 cut(s) | 1338, 2308, 2374, 2903 |
| HpaII | CCGG | 5 cut(s) | 111, 234, 1113, 2784, 3271 |
| HphI | GGTGA | 8 cut(s) | 281, 1127, 1202, 1214, 2238, 2773, 3260, 3287 |
| Hpy166II | GTNNAC | 7 cut(s) | 1118, 1338, 2308, 2374, 2541, 2781, 2903 |
| Hpy8I | GTNNAC | 7 cut(s) | 1118, 1338, 2308, 2374, 2541, 2781, 2903 |
| Hpy99I | CGWCG | 3 cut(s) | 424, 2048, 3182 |
| HpyCH4IV | ACGT | 2 cut(s) | 730, 2403 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 58, 566, 656, 979, 1169, 1853 |
| HpySE526I | ACGT | 2 cut(s) | 730, 2403 |
| Hsp92II | CATG | 9 cut(s) | 227, 802, 1344, 1392, 1412, 1445, 2065, 2264, 2716 |
| KflI | GGGWCCC | 1 cut(s) | 2236 |
| LmnI | GCTCC | 4 cut(s) | 22, 1168, 2641, 3233 |
| Lsp1109I | GCAGC | 7 cut(s) | 544, 643, 840, 1245, 1724, 2026, 2743 |
| LweI | GCATC | 6 cut(s) | 544, 883, 1710, 1930, 2014, 2154 |
| MaeII | ACGT | 2 cut(s) | 730, 2403 |
| MaeIII | GTNAC | 9 cut(s) | 118, 283, 1190, 1414, 1500, 1544, 1663, 2944, 3266 |
| MfeI | CAATTG | 1 cut(s) | 169 |
| MflI | RGATCY | 5 cut(s) | 136, 1142, 1797, 2193, 3315 |
| MhlI | GDGCHC | 6 cut(s) | 168, 325, 772, 1329, 2451, 3005 |
| MluI | ACGCGT | 1 cut(s) | 3127 |
| MlyI | GAGTC | 9 cut(s) | 305, 398, 763, 1046, 1103, 1239, 2150, 3157, 3241 |
| MmeI | TCCRAC | 5 cut(s) | 771, 1006, 1147, 2591, 2604 |
| Mph1103I | ATGCAT | 3 cut(s) | 1390, 1789, 2383 |
| MseI | TTAA | 8 cut(s) | 86, 447, 588, 1011, 1457, 2325, 2550, 3185 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1236, 3156, 3273 |
| MspA1I | CMGCKG | 1 cut(s) | 2257 |
| MspCI | CTTAAG | 1 cut(s) | 2324 |
| MspI | CCGG | 5 cut(s) | 111, 234, 1113, 2784, 3271 |
| MspR9I | CCNGG | 6 cut(s) | 111, 112, 235, 774, 3203, 3272 |
| MunI | CAATTG | 1 cut(s) | 169 |
| Mva1269I | GAATGC | 5 cut(s) | 195, 865, 1139, 1519, 1789 |
| MvaI | CCWGG | 2 cut(s) | 774, 3203 |
| MvnI | CGCG | 4 cut(s) | 45, 419, 618, 3129 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 58, 566, 656, 979, 1169, 1853 |
| NciI | CCSGG | 4 cut(s) | 111, 112, 235, 3272 |
| NdeI | CATATG | 1 cut(s) | 628 |
| NlaIII | CATG | 9 cut(s) | 227, 802, 1344, 1392, 1412, 1445, 2065, 2264, 2716 |
| NmuCI | GTSAC | 4 cut(s) | 1190, 1663, 2944, 3266 |
| NsiI | ATGCAT | 3 cut(s) | 1390, 1789, 2383 |
| NspI | RCATGY | 2 cut(s) | 1412, 1445 |
| NspV | TTCGAA | 1 cut(s) | 2557 |
| OliI | CACNNNNGTG | 1 cut(s) | 3273 |
| PaeR7I | CTCGAG | 1 cut(s) | 3165 |
| PagI | TCATGA | 1 cut(s) | 223 |
| PaqCI | CACCTGC | 2 cut(s) | 1388, 1632 |
| PceI | AGGCCT | 2 cut(s) | 1180, 3287 |
| PctI | GAATGC | 5 cut(s) | 195, 865, 1139, 1519, 1789 |
| PfeI | GAWTC | 9 cut(s) | 289, 440, 544, 1066, 1088, 1757, 2437, 3239, 3278 |
| PflFI | GACNNNGTC | 1 cut(s) | 146 |
| PinAI | ACCGGT | 1 cut(s) | 1112 |
| PkrI | GCNGC | 9 cut(s) | 44, 559, 658, 855, 1260, 1714, 2041, 2259, 2758 |
| PleI | GAGTC | 9 cut(s) | 304, 398, 762, 1045, 1102, 1239, 2149, 3157, 3241 |
| PpsI | GAGTC | 9 cut(s) | 304, 398, 762, 1045, 1102, 1239, 2149, 3157, 3241 |
| PpuMI | RGGWCCY | 2 cut(s) | 2236, 3058 |
| PshBI | ATTAAT | 1 cut(s) | 2550 |
| Psp124BI | GAGCTC | 1 cut(s) | 1329 |
| Psp5II | RGGWCCY | 2 cut(s) | 2236, 3058 |
| Psp6I | CCWGG | 2 cut(s) | 772, 3201 |
| PspEI | GGTNACC | 1 cut(s) | 1544 |
| PspFI | CCCAGC | 1 cut(s) | 2477 |
| PspGI | CCWGG | 2 cut(s) | 772, 3201 |
| PspOMI | GGGCCC | 1 cut(s) | 3001 |
| PspPI | GGNCC | 5 cut(s) | 1487, 2236, 3001, 3002, 3058 |
| PspPPI | RGGWCCY | 2 cut(s) | 2236, 3058 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3114, 3146 |
| PstI | CTGCAG | 3 cut(s) | 661, 2104, 3213 |
| PsuI | RGATCY | 5 cut(s) | 136, 1142, 1797, 2193, 3315 |
| PsyI | GACNNNGTC | 1 cut(s) | 146 |
| RsaI | GTAC | 1 cut(s) | 2060 |
| RsaNI | GTAC | 1 cut(s) | 2059 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1236, 3156, 3273 |
| SacI | GAGCTC | 1 cut(s) | 1329 |
| SaqAI | TTAA | 8 cut(s) | 86, 447, 588, 1011, 1457, 2325, 2550, 3185 |
| SatI | GCNGC | 9 cut(s) | 43, 558, 657, 854, 1259, 1713, 2040, 2258, 2757 |
| Sau96I | GGNCC | 5 cut(s) | 1487, 2236, 3001, 3002, 3058 |
| SchI | GAGTC | 9 cut(s) | 305, 398, 763, 1046, 1103, 1239, 2150, 3157, 3241 |
| ScrFI | CCNGG | 6 cut(s) | 111, 112, 235, 774, 3203, 3272 |
| SduI | GDGCHC | 6 cut(s) | 168, 325, 772, 1329, 2451, 3005 |
| SfaNI | GCATC | 6 cut(s) | 544, 883, 1710, 1930, 2014, 2154 |
| SfcI | CTRYAG | 5 cut(s) | 474, 657, 2100, 2760, 3209 |
| Sfr274I | CTCGAG | 1 cut(s) | 3165 |
| SfuI | TTCGAA | 1 cut(s) | 2557 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1112 |
| SinI | GGWCC | 3 cut(s) | 1487, 2236, 3058 |
| SlaI | CTCGAG | 1 cut(s) | 3165 |
| SmaI | CCCGGG | 1 cut(s) | 112 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1236, 3156, 3273 |
| SmlI | CTYRAG | 6 cut(s) | 1138, 1322, 2051, 2324, 3062, 3165 |
| SmoI | CTYRAG | 6 cut(s) | 1138, 1322, 2051, 2324, 3062, 3165 |
| SpeI | ACTAGT | 1 cut(s) | 901 |
| SseBI | AGGCCT | 2 cut(s) | 1180, 3287 |
| SsiI | CCGC | 7 cut(s) | 43, 116, 350, 616, 1490, 2257, 2665 |
| SspI | AATATT | 1 cut(s) | 3261 |
| SstI | GAGCTC | 1 cut(s) | 1329 |
| StuI | AGGCCT | 2 cut(s) | 1180, 3287 |
| StyD4I | CCNGG | 6 cut(s) | 109, 110, 233, 772, 3201, 3270 |
| StyI | CCWWGG | 2 cut(s) | 2424, 2516 |
| TaiI | ACGT | 2 cut(s) | 733, 2406 |
| TaqII | GACCGA | 2 cut(s) | 2027, 2781 |
| TatI | WGTACW | 1 cut(s) | 2058 |
| TauI | GCSGC | 2 cut(s) | 45, 2260 |
| TfiI | GAWTC | 9 cut(s) | 289, 440, 544, 1066, 1088, 1757, 2437, 3239, 3278 |
| Tru1I | TTAA | 8 cut(s) | 86, 447, 588, 1011, 1457, 2325, 2550, 3185 |
| Tru9I | TTAA | 8 cut(s) | 86, 447, 588, 1011, 1457, 2325, 2550, 3185 |
| TscAI | CASTG | 8 cut(s) | 157, 1024, 1220, 1273, 1426, 1744, 2877, 2973 |
| TseFI | GTSAC | 4 cut(s) | 1190, 1663, 2944, 3266 |
| TseI | GCWGC | 7 cut(s) | 557, 656, 853, 1258, 1712, 2039, 2756 |
| Tsp45I | GTSAC | 4 cut(s) | 1190, 1663, 2944, 3266 |
| TspDTI | ATGAA | 5 cut(s) | 263, 645, 1361, 1946, 2701 |
| TspGWI | ACGGA | 5 cut(s) | 1060, 1376, 1391, 2558, 2972 |
| TspMI | CCCGGG | 1 cut(s) | 110 |
| TspRI | CASTG | 8 cut(s) | 157, 1024, 1220, 1273, 1426, 1744, 2877, 2973 |
| Tth111I | GACNNNGTC | 1 cut(s) | 146 |
| Vha464I | CTTAAG | 1 cut(s) | 2324 |
| VpaK11BI | GGWCC | 3 cut(s) | 1487, 2236, 3058 |
| VspI | ATTAAT | 1 cut(s) | 2550 |
| XapI | RAATTY | 3 cut(s) | 941, 1431, 2266 |
| XceI | RCATGY | 2 cut(s) | 1412, 1445 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1220 |
| XhoI | CTCGAG | 1 cut(s) | 3165 |
| XmaI | CCCGGG | 1 cut(s) | 110 |
| XmaJI | CCTAGG | 1 cut(s) | 2516 |
| XmiI | GTMKAC | 1 cut(s) | 2540 |
| Zsp2I | ATGCAT | 3 cut(s) | 1390, 1789, 2383 |