Reverse transcriptase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 1 - 105 | 2.8e-12 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 300 |
| AciI | CCGC | 2 cut(s) | 38, 454 |
| AclI | AACGTT | 1 cut(s) | 116 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 495 |
| AflIII | ACRYGT | 1 cut(s) | 56 |
| AgsI | TTSAA | 3 cut(s) | 149, 353, 484 |
| AjnI | CCWGG | 1 cut(s) | 476 |
| AluBI | AGCT | 3 cut(s) | 162, 340, 395 |
| AluI | AGCT | 3 cut(s) | 162, 340, 395 |
| Ama87I | CYCGRG | 1 cut(s) | 312 |
| AoxI | GGCC | 2 cut(s) | 108, 212 |
| ApeKI | GCWGC | 3 cut(s) | 29, 86, 173 |
| AseI | ATTAAT | 1 cut(s) | 222 |
| AspLEI | GCGC | 1 cut(s) | 301 |
| AspS9I | GGNCC | 2 cut(s) | 109, 212 |
| AsuHPI | GGTGA | 1 cut(s) | 164 |
| AsuII | TTCGAA | 1 cut(s) | 386 |
| AvaI | CYCGRG | 1 cut(s) | 312 |
| BbsI | GAAGAC | 1 cut(s) | 360 |
| BbvI | GCAGC | 3 cut(s) | 16, 73, 160 |
| BciT130I | CCWGG | 1 cut(s) | 478 |
| BfaI | CTAG | 1 cut(s) | 159 |
| BisI | GCNGC | 3 cut(s) | 30, 87, 174 |
| BlsI | GCNGC | 3 cut(s) | 31, 88, 175 |
| Bme1390I | CCNGG | 1 cut(s) | 478 |
| BmeT110I | CYCGRG | 1 cut(s) | 312 |
| BmgT120I | GGNCC | 2 cut(s) | 109, 212 |
| BmiI | GGNNCC | 1 cut(s) | 213 |
| BmrFI | CCNGG | 1 cut(s) | 478 |
| BpiI | GAAGAC | 1 cut(s) | 360 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| Bpu10I | CCTNAGC | 1 cut(s) | 370 |
| Bpu14I | TTCGAA | 1 cut(s) | 386 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 495 |
| Bse1I | ACTGG | 1 cut(s) | 244 |
| Bse3DI | GCAATG | 1 cut(s) | 24 |
| BseBI | CCWGG | 1 cut(s) | 478 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 495 |
| BseMI | GCAATG | 1 cut(s) | 24 |
| BseMII | CTCAG | 1 cut(s) | 269 |
| BseNI | ACTGG | 1 cut(s) | 244 |
| BseRI | GAGGAG | 1 cut(s) | 206 |
| BseXI | GCAGC | 3 cut(s) | 16, 73, 160 |
| BshFI | GGCC | 2 cut(s) | 110, 214 |
| BsiHKCI | CYCGRG | 1 cut(s) | 312 |
| BslFI | GGGAC | 1 cut(s) | 470 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 495 |
| BsmFI | GGGAC | 1 cut(s) | 470 |
| BsnI | GGCC | 2 cut(s) | 110, 214 |
| BsoBI | CYCGRG | 1 cut(s) | 312 |
| Bsp119I | TTCGAA | 1 cut(s) | 386 |
| Bsp143I | GATC | 2 cut(s) | 7, 226 |
| BspACI | CCGC | 2 cut(s) | 38, 454 |
| BspANI | GGCC | 2 cut(s) | 110, 214 |
| BspCNI | CTCAG | 1 cut(s) | 268 |
| BspLI | GGNNCC | 1 cut(s) | 213 |
| BspT104I | TTCGAA | 1 cut(s) | 386 |
| BsrDI | GCAATG | 1 cut(s) | 24 |
| BsrI | ACTGG | 1 cut(s) | 244 |
| BssMI | GATC | 2 cut(s) | 7, 226 |
| Bst2UI | CCWGG | 1 cut(s) | 478 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 238 |
| BstBI | TTCGAA | 1 cut(s) | 386 |
| BstC8I | GCNNGC | 2 cut(s) | 108, 309 |
| BstDEI | CTNAG | 2 cut(s) | 255, 370 |
| BstHHI | GCGC | 1 cut(s) | 301 |
| BstKTI | GATC | 2 cut(s) | 10, 229 |
| BstMBI | GATC | 2 cut(s) | 7, 226 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 35, 71, 95, 238 |
| BstNI | CCWGG | 1 cut(s) | 478 |
| BstNSI | RCATGY | 1 cut(s) | 60 |
| BstSCI | CCNGG | 1 cut(s) | 476 |
| BstV1I | GCAGC | 3 cut(s) | 16, 73, 160 |
| BstV2I | GAAGAC | 1 cut(s) | 360 |
| BsuRI | GGCC | 2 cut(s) | 110, 214 |
| Cac8I | GCNNGC | 2 cut(s) | 108, 309 |
| CfoI | GCGC | 1 cut(s) | 301 |
| Cfr13I | GGNCC | 2 cut(s) | 109, 212 |
| CseI | GACGC | 1 cut(s) | 467 |
| CsiI | ACCWGGT | 1 cut(s) | 476 |
| CviAII | CATG | 4 cut(s) | 57, 71, 125, 178 |
| CviJI | RGCY | 9 cut(s) | 98, 110, 162, 173, 214, 307, 340, 395, 488 |
| CviKI_1 | RGCY | 9 cut(s) | 98, 110, 162, 173, 214, 307, 340, 395, 488 |
| DdeI | CTNAG | 2 cut(s) | 255, 370 |
| DpnI | GATC | 2 cut(s) | 9, 228 |
| DpnII | GATC | 2 cut(s) | 7, 226 |
| Eco88I | CYCGRG | 1 cut(s) | 312 |
| EcoO109I | RGGNCCY | 1 cut(s) | 212 |
| EcoRII | CCWGG | 1 cut(s) | 476 |
| FaeI | CATG | 4 cut(s) | 60, 74, 128, 181 |
| FaiI | YATR | 9 cut(s) | 12, 58, 72, 126, 179, 273, 409, 419, 452 |
| FaqI | GGGAC | 1 cut(s) | 470 |
| FatI | CATG | 4 cut(s) | 56, 70, 124, 177 |
| FauI | CCCGC | 2 cut(s) | 31, 447 |
| Fnu4HI | GCNGC | 3 cut(s) | 30, 87, 174 |
| Fsp4HI | GCNGC | 3 cut(s) | 30, 87, 174 |
| FspBI | CTAG | 1 cut(s) | 159 |
| FspI | TGCGCA | 1 cut(s) | 300 |
| GlaI | GCGC | 1 cut(s) | 300 |
| GluI | GCNGC | 3 cut(s) | 30, 87, 174 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeIII | GGCC | 2 cut(s) | 110, 214 |
| HgaI | GACGC | 1 cut(s) | 467 |
| HhaI | GCGC | 1 cut(s) | 301 |
| Hin1II | CATG | 4 cut(s) | 60, 74, 128, 181 |
| Hin6I | GCGC | 1 cut(s) | 299 |
| HinP1I | GCGC | 1 cut(s) | 299 |
| HindIII | AAGCTT | 1 cut(s) | 393 |
| HinfI | GANTC | 1 cut(s) | 155 |
| HphI | GGTGA | 1 cut(s) | 164 |
| Hpy166II | GTNNAC | 1 cut(s) | 268 |
| Hpy188III | TCNNGA | 1 cut(s) | 188 |
| Hpy8I | GTNNAC | 1 cut(s) | 268 |
| HpyAV | CCTTC | 3 cut(s) | 143, 175, 480 |
| HpyCH4IV | ACGT | 1 cut(s) | 116 |
| HpyCH4V | TGCA | 4 cut(s) | 32, 74, 232, 277 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 35, 71, 95, 238 |
| HpyF3I | CTNAG | 2 cut(s) | 255, 370 |
| HpySE526I | ACGT | 1 cut(s) | 116 |
| Hsp92II | CATG | 4 cut(s) | 60, 74, 128, 181 |
| HspAI | GCGC | 1 cut(s) | 299 |
| Kzo9I | GATC | 2 cut(s) | 7, 226 |
| LmnI | GCTCC | 1 cut(s) | 246 |
| LpnPI | CCDG | 8 cut(s) | 80, 92, 173, 257, 289, 374, 463, 490 |
| Lsp1109I | GCAGC | 3 cut(s) | 16, 73, 160 |
| MabI | ACCWGGT | 1 cut(s) | 476 |
| MaeI | CTAG | 1 cut(s) | 159 |
| MaeII | ACGT | 1 cut(s) | 116 |
| MaeIII | GTNAC | 2 cut(s) | 152, 287 |
| MalI | GATC | 2 cut(s) | 9, 228 |
| MboI | GATC | 2 cut(s) | 7, 226 |
| MboII | GAAGA | 2 cut(s) | 365, 400 |
| MluCI | AATT | 1 cut(s) | 401 |
| MlyI | GAGTC | 1 cut(s) | 149 |
| MmeI | TCCRAC | 2 cut(s) | 32, 304 |
| MnlI | CCTC | 5 cut(s) | 184, 187, 264, 278, 426 |
| MseI | TTAA | 1 cut(s) | 222 |
| MspR9I | CCNGG | 1 cut(s) | 478 |
| MvaI | CCWGG | 1 cut(s) | 478 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 35, 71, 95, 238 |
| NdeII | GATC | 2 cut(s) | 7, 226 |
| NlaIII | CATG | 4 cut(s) | 60, 74, 128, 181 |
| NlaIV | GGNNCC | 1 cut(s) | 213 |
| NmuCI | GTSAC | 1 cut(s) | 152 |
| NsbI | TGCGCA | 1 cut(s) | 300 |
| NspI | RCATGY | 1 cut(s) | 60 |
| NspV | TTCGAA | 1 cut(s) | 386 |
| PaeR7I | CTCGAG | 1 cut(s) | 312 |
| PciI | ACATGT | 1 cut(s) | 56 |
| PkrI | GCNGC | 3 cut(s) | 31, 88, 175 |
| PleI | GAGTC | 1 cut(s) | 149 |
| PpsI | GAGTC | 1 cut(s) | 149 |
| PscI | ACATGT | 1 cut(s) | 56 |
| PshBI | ATTAAT | 1 cut(s) | 222 |
| Psp1406I | AACGTT | 1 cut(s) | 116 |
| Psp6I | CCWGG | 1 cut(s) | 476 |
| PspGI | CCWGG | 1 cut(s) | 476 |
| PspN4I | GGNNCC | 1 cut(s) | 213 |
| PspPI | GGNCC | 2 cut(s) | 109, 212 |
| PspXI | VCTCGAGB | 1 cut(s) | 312 |
| SaqAI | TTAA | 1 cut(s) | 222 |
| SatI | GCNGC | 3 cut(s) | 30, 87, 174 |
| Sau3AI | GATC | 2 cut(s) | 7, 226 |
| Sau96I | GGNCC | 2 cut(s) | 109, 212 |
| SchI | GAGTC | 1 cut(s) | 149 |
| ScrFI | CCNGG | 1 cut(s) | 478 |
| SetI | ASST | 8 cut(s) | 119, 154, 164, 289, 342, 397, 482, 500 |
| SexAI | ACCWGGT | 1 cut(s) | 476 |
| Sfr274I | CTCGAG | 1 cut(s) | 312 |
| SfuI | TTCGAA | 1 cut(s) | 386 |
| SlaI | CTCGAG | 1 cut(s) | 312 |
| SmlI | CTYRAG | 1 cut(s) | 312 |
| SmoI | CTYRAG | 1 cut(s) | 312 |
| Sse9I | AATT | 1 cut(s) | 401 |
| SsiI | CCGC | 2 cut(s) | 38, 454 |
| SspMI | CTAG | 1 cut(s) | 159 |
| StyD4I | CCNGG | 1 cut(s) | 476 |
| TaiI | ACGT | 1 cut(s) | 119 |
| TaqI | TCGA | 4 cut(s) | 44, 313, 386, 473 |
| TasI | AATT | 1 cut(s) | 401 |
| Tru1I | TTAA | 1 cut(s) | 222 |
| Tru9I | TTAA | 1 cut(s) | 222 |
| TseFI | GTSAC | 1 cut(s) | 152 |
| TseI | GCWGC | 3 cut(s) | 29, 86, 173 |
| Tsp45I | GTSAC | 1 cut(s) | 152 |
| TspDTI | ATGAA | 3 cut(s) | 13, 192, 194 |
| VspI | ATTAAT | 1 cut(s) | 222 |
| XceI | RCATGY | 1 cut(s) | 60 |
| XhoI | CTCGAG | 1 cut(s) | 312 |
| XspI | CTAG | 1 cut(s) | 159 |