Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 428 |
| AciI | CCGC | 1 cut(s) | 290 |
| AcsI | RAATTY | 2 cut(s) | 24, 33 |
| AcuI | CTGAAG | 1 cut(s) | 102 |
| AfaI | GTAC | 2 cut(s) | 62, 97 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 267, 268 |
| AgsI | TTSAA | 1 cut(s) | 402 |
| AoxI | GGCC | 1 cut(s) | 116 |
| ApoI | RAATTY | 2 cut(s) | 24, 33 |
| AsuHPI | GGTGA | 1 cut(s) | 98 |
| BauI | CACGAG | 2 cut(s) | 353, 470 |
| BbsI | GAAGAC | 1 cut(s) | 246 |
| BccI | CCATC | 1 cut(s) | 171 |
| BciVI | GTATCC | 1 cut(s) | 389 |
| BfaI | CTAG | 1 cut(s) | 54 |
| BfmI | CTRYAG | 1 cut(s) | 99 |
| BfuI | GTATCC | 1 cut(s) | 389 |
| BmcAI | AGTACT | 1 cut(s) | 97 |
| BmsI | GCATC | 1 cut(s) | 262 |
| BpiI | GAAGAC | 1 cut(s) | 246 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 367, 399 |
| Bsa29I | ATCGAT | 1 cut(s) | 300 |
| BsaAI | YACGTR | 1 cut(s) | 167 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 267, 268 |
| BseCI | ATCGAT | 1 cut(s) | 300 |
| BseGI | GGATG | 2 cut(s) | 277, 328 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 267, 268 |
| BshFI | GGCC | 1 cut(s) | 118 |
| BshVI | ATCGAT | 1 cut(s) | 300 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 267, 268 |
| BsnI | GGCC | 1 cut(s) | 118 |
| Bsp1407I | TGTACA | 1 cut(s) | 60 |
| Bsp143I | GATC | 2 cut(s) | 297, 301 |
| BspACI | CCGC | 1 cut(s) | 290 |
| BspANI | GGCC | 1 cut(s) | 118 |
| BspDI | ATCGAT | 1 cut(s) | 300 |
| BspMAI | CTGCAG | 1 cut(s) | 103 |
| BsrGI | TGTACA | 1 cut(s) | 60 |
| BssMI | GATC | 2 cut(s) | 297, 301 |
| BssSI | CACGAG | 2 cut(s) | 353, 470 |
| Bst2BI | CACGAG | 2 cut(s) | 353, 470 |
| Bst4CI | ACNGT | 1 cut(s) | 60 |
| BstAUI | TGTACA | 1 cut(s) | 60 |
| BstBAI | YACGTR | 1 cut(s) | 167 |
| BstC8I | GCNNGC | 1 cut(s) | 6 |
| BstDEI | CTNAG | 1 cut(s) | 266 |
| BstF5I | GGATG | 2 cut(s) | 277, 328 |
| BstKTI | GATC | 2 cut(s) | 300, 304 |
| BstMBI | GATC | 2 cut(s) | 297, 301 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 10 |
| BstSFI | CTRYAG | 1 cut(s) | 99 |
| BstV2I | GAAGAC | 1 cut(s) | 246 |
| Bsu15I | ATCGAT | 1 cut(s) | 300 |
| BsuI | GTATCC | 1 cut(s) | 389 |
| BsuRI | GGCC | 1 cut(s) | 118 |
| BsuTUI | ATCGAT | 1 cut(s) | 300 |
| BtsCI | GGATG | 2 cut(s) | 277, 328 |
| BtsIMutI | CAGTG | 1 cut(s) | 347 |
| Cac8I | GCNNGC | 1 cut(s) | 6 |
| ClaI | ATCGAT | 1 cut(s) | 300 |
| Csp6I | GTAC | 2 cut(s) | 61, 96 |
| CviAII | CATG | 2 cut(s) | 215, 246 |
| CviJI | RGCY | 4 cut(s) | 68, 118, 226, 398 |
| CviKI_1 | RGCY | 4 cut(s) | 68, 118, 226, 398 |
| CviQI | GTAC | 2 cut(s) | 61, 96 |
| DdeI | CTNAG | 1 cut(s) | 266 |
| DpnI | GATC | 2 cut(s) | 299, 303 |
| DpnII | GATC | 2 cut(s) | 297, 301 |
| DraI | TTTAAA | 1 cut(s) | 30 |
| Eco147I | AGGCCT | 1 cut(s) | 118 |
| Eco57I | CTGAAG | 1 cut(s) | 102 |
| FaeI | CATG | 2 cut(s) | 218, 249 |
| FaiI | YATR | 7 cut(s) | 140, 142, 216, 247, 285, 428, 459 |
| FatI | CATG | 2 cut(s) | 214, 245 |
| FokI | GGATG | 2 cut(s) | 284, 335 |
| FspBI | CTAG | 1 cut(s) | 54 |
| HaeIII | GGCC | 1 cut(s) | 118 |
| Hin1II | CATG | 2 cut(s) | 218, 249 |
| HinfI | GANTC | 3 cut(s) | 41, 197, 233 |
| HphI | GGTGA | 1 cut(s) | 98 |
| Hpy166II | GTNNAC | 1 cut(s) | 348 |
| Hpy188III | TCNNGA | 3 cut(s) | 38, 230, 472 |
| Hpy8I | GTNNAC | 1 cut(s) | 348 |
| Hpy99I | CGWCG | 1 cut(s) | 396 |
| HpyAV | CCTTC | 2 cut(s) | 77, 140 |
| HpyCH4III | ACNGT | 1 cut(s) | 60 |
| HpyCH4IV | ACGT | 1 cut(s) | 166 |
| HpyCH4V | TGCA | 3 cut(s) | 8, 101, 457 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 10 |
| HpyF3I | CTNAG | 1 cut(s) | 266 |
| HpySE526I | ACGT | 1 cut(s) | 166 |
| Hsp92II | CATG | 2 cut(s) | 218, 249 |
| Kzo9I | GATC | 2 cut(s) | 297, 301 |
| LmnI | GCTCC | 1 cut(s) | 280 |
| LpnPI | CCDG | 4 cut(s) | 51, 93, 243, 403 |
| LweI | GCATC | 1 cut(s) | 262 |
| MaeI | CTAG | 1 cut(s) | 54 |
| MaeII | ACGT | 1 cut(s) | 166 |
| MalI | GATC | 2 cut(s) | 299, 303 |
| MboI | GATC | 2 cut(s) | 297, 301 |
| MboII | GAAGA | 1 cut(s) | 246 |
| MluCI | AATT | 4 cut(s) | 24, 33, 171, 183 |
| MlyI | GAGTC | 1 cut(s) | 206 |
| MmeI | TCCRAC | 1 cut(s) | 307 |
| MnlI | CCTC | 3 cut(s) | 129, 273, 393 |
| MseI | TTAA | 2 cut(s) | 29, 336 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 10 |
| NdeII | GATC | 2 cut(s) | 297, 301 |
| NlaIII | CATG | 2 cut(s) | 218, 249 |
| PceI | AGGCCT | 1 cut(s) | 118 |
| PfeI | GAWTC | 2 cut(s) | 41, 233 |
| PleI | GAGTC | 1 cut(s) | 205 |
| PpsI | GAGTC | 1 cut(s) | 205 |
| Ppu21I | YACGTR | 1 cut(s) | 167 |
| PsiI | TTATAA | 1 cut(s) | 428 |
| PstI | CTGCAG | 1 cut(s) | 103 |
| RsaI | GTAC | 2 cut(s) | 62, 97 |
| RsaNI | GTAC | 2 cut(s) | 61, 96 |
| SaqAI | TTAA | 2 cut(s) | 29, 336 |
| Sau3AI | GATC | 2 cut(s) | 297, 301 |
| ScaI | AGTACT | 1 cut(s) | 97 |
| SchI | GAGTC | 1 cut(s) | 206 |
| SetI | ASST | 5 cut(s) | 19, 88, 151, 169, 413 |
| SfaNI | GCATC | 1 cut(s) | 262 |
| SfcI | CTRYAG | 1 cut(s) | 99 |
| Sse9I | AATT | 4 cut(s) | 24, 33, 171, 183 |
| SseBI | AGGCCT | 1 cut(s) | 118 |
| SsiI | CCGC | 1 cut(s) | 290 |
| SspMI | CTAG | 1 cut(s) | 54 |
| StuI | AGGCCT | 1 cut(s) | 118 |
| TaaI | ACNGT | 1 cut(s) | 60 |
| TaiI | ACGT | 1 cut(s) | 169 |
| TaqI | TCGA | 2 cut(s) | 151, 300 |
| TasI | AATT | 4 cut(s) | 24, 33, 171, 183 |
| TatI | WGTACW | 2 cut(s) | 60, 95 |
| TfiI | GAWTC | 2 cut(s) | 41, 233 |
| Tru1I | TTAA | 2 cut(s) | 29, 336 |
| Tru9I | TTAA | 2 cut(s) | 29, 336 |
| TscAI | CASTG | 1 cut(s) | 347 |
| TspGWI | ACGGA | 1 cut(s) | 240 |
| TspRI | CASTG | 1 cut(s) | 347 |
| XapI | RAATTY | 2 cut(s) | 24, 33 |
| XspI | CTAG | 1 cut(s) | 54 |
| ZrmI | AGTACT | 1 cut(s) | 97 |