Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 490 |
| AclWI | GGATC | 2 cut(s) | 433, 518 |
| AcoI | YGGCCR | 4 cut(s) | 75, 273, 407, 1277 |
| AcsI | RAATTY | 2 cut(s) | 563, 1552 |
| AcuI | CTGAAG | 1 cut(s) | 200 |
| AcvI | CACGTG | 1 cut(s) | 242 |
| AfaI | GTAC | 3 cut(s) | 307, 1201, 1339 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 139, 405, 1652 |
| AgsI | TTSAA | 6 cut(s) | 466, 656, 1148, 1230, 1515, 1735 |
| AhlI | ACTAGT | 1 cut(s) | 1202 |
| AjiI | CACGTC | 1 cut(s) | 976 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1469, 1501 |
| Alw21I | GWGCWC | 1 cut(s) | 99 |
| Alw26I | GTCTC | 8 cut(s) | 69, 383, 413, 508, 697, 835, 1265, 1701 |
| AlwI | GGATC | 2 cut(s) | 433, 518 |
| ApeKI | GCWGC | 9 cut(s) | 40, 169, 172, 175, 178, 181, 649, 1114, 1661 |
| ApoI | RAATTY | 2 cut(s) | 563, 1552 |
| AspS9I | GGNCC | 5 cut(s) | 142, 208, 396, 485, 1096 |
| AsuC2I | CCSGG | 3 cut(s) | 74, 400, 1100 |
| AsuHPI | GGTGA | 2 cut(s) | 398, 1681 |
| AsuII | TTCGAA | 1 cut(s) | 567 |
| AvaII | GGWCC | 1 cut(s) | 396 |
| BaeGI | GKGCMC | 1 cut(s) | 1034 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 515, 548 |
| BanII | GRGCYC | 1 cut(s) | 99 |
| BbrPI | CACGTG | 1 cut(s) | 242 |
| BbsI | GAAGAC | 4 cut(s) | 18, 599, 622, 852 |
| Bbv12I | GWGCWC | 1 cut(s) | 99 |
| BbvCI | CCTCAGC | 2 cut(s) | 126, 363 |
| BbvI | GCAGC | 9 cut(s) | 52, 181, 184, 187, 190, 193, 661, 1126, 1648 |
| BccI | CCATC | 9 cut(s) | 153, 199, 383, 617, 892, 939, 988, 1021, 1619 |
| BceAI | ACGGC | 2 cut(s) | 674, 895 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 866, 900 |
| BclI | TGATCA | 2 cut(s) | 1237, 1243 |
| BcnI | CCSGG | 3 cut(s) | 74, 400, 1100 |
| BcoDI | GTCTC | 8 cut(s) | 69, 383, 413, 508, 697, 835, 1265, 1701 |
| BcuI | ACTAGT | 1 cut(s) | 1202 |
| BfaI | CTAG | 3 cut(s) | 507, 675, 1203 |
| BfmI | CTRYAG | 2 cut(s) | 634, 1662 |
| BglII | AGATCT | 1 cut(s) | 31 |
| BlpI | GCTNAGC | 1 cut(s) | 1739 |
| BmcAI | AGTACT | 2 cut(s) | 1201, 1339 |
| Bme1390I | CCNGG | 3 cut(s) | 74, 400, 1100 |
| Bme18I | GGWCC | 1 cut(s) | 396 |
| BmgBI | CACGTC | 1 cut(s) | 976 |
| BmgT120I | GGNCC | 5 cut(s) | 142, 208, 396, 485, 1096 |
| BmiI | GGNNCC | 1 cut(s) | 397 |
| BmrFI | CCNGG | 3 cut(s) | 74, 400, 1100 |
| BmrI | ACTGGG | 1 cut(s) | 99 |
| BmsI | GCATC | 2 cut(s) | 193, 1162 |
| BmuI | ACTGGG | 1 cut(s) | 99 |
| BpiI | GAAGAC | 4 cut(s) | 18, 599, 622, 852 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 363, 395 |
| BpmI | CTGGAG | 2 cut(s) | 377, 455 |
| Bpu10I | CCTNAGC | 2 cut(s) | 126, 363 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1739 |
| Bpu14I | TTCGAA | 1 cut(s) | 567 |
| BpuEI | CTTGAG | 2 cut(s) | 935, 1058 |
| BpuMI | CCSGG | 3 cut(s) | 74, 400, 1100 |
| BsaAI | YACGTR | 1 cut(s) | 242 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1242 |
| BsaI | GGTCTC | 1 cut(s) | 69 |
| BsaJI | CCNNGG | 2 cut(s) | 410, 864 |
| BsaWI | WCCGGW | 1 cut(s) | 441 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 428, 458, 1046, 1076, 1316, 1346 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 139, 405, 1652 |
| Bse118I | RCCGGY | 2 cut(s) | 210, 275 |
| Bse1I | ACTGG | 4 cut(s) | 16, 61, 105, 1759 |
| Bse3DI | GCAATG | 4 cut(s) | 684, 888, 1175, 1663 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1242 |
| BseDI | CCNNGG | 2 cut(s) | 410, 864 |
| BseGI | GGATG | 4 cut(s) | 184, 502, 950, 1177 |
| BseJI | GATNNNNATC | 1 cut(s) | 1242 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 139, 405, 1652 |
| BseMI | GCAATG | 4 cut(s) | 684, 888, 1175, 1663 |
| BseMII | CTCAG | 5 cut(s) | 49, 140, 352, 354, 1753 |
| BseNI | ACTGG | 4 cut(s) | 16, 61, 105, 1759 |
| BseRI | GAGGAG | 5 cut(s) | 122, 952, 1022, 1394, 1593 |
| BseSI | GKGCMC | 1 cut(s) | 1034 |
| BseX3I | CGGCCG | 1 cut(s) | 273 |
| BseXI | GCAGC | 9 cut(s) | 52, 181, 184, 187, 190, 193, 661, 1126, 1648 |
| Bsh1285I | CGRYCG | 1 cut(s) | 276 |
| BsiEI | CGRYCG | 1 cut(s) | 276 |
| BsiHKAI | GWGCWC | 1 cut(s) | 99 |
| BsiSI | CCGG | 9 cut(s) | 74, 140, 211, 276, 399, 442, 612, 1099, 1280 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 139, 405, 1652 |
| BsmAI | GTCTC | 8 cut(s) | 69, 383, 413, 508, 697, 835, 1265, 1701 |
| BsmBI | CGTCTC | 2 cut(s) | 697, 835 |
| BsmI | GAATGC | 1 cut(s) | 1289 |
| Bso31I | GGTCTC | 1 cut(s) | 69 |
| Bsp119I | TTCGAA | 1 cut(s) | 567 |
| Bsp1286I | GDGCHC | 2 cut(s) | 99, 1034 |
| Bsp143I | GATC | 6 cut(s) | 31, 438, 510, 709, 1237, 1243 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1739 |
| BspCNI | CTCAG | 5 cut(s) | 48, 139, 351, 355, 1752 |
| BspHI | TCATGA | 7 cut(s) | 45, 198, 250, 1207, 1240, 1246, 1609 |
| BspLI | GGNNCC | 1 cut(s) | 397 |
| BspMAI | CTGCAG | 1 cut(s) | 1666 |
| BspPI | GGATC | 2 cut(s) | 433, 518 |
| BspQI | GCTCTTC | 1 cut(s) | 104 |
| BspT104I | TTCGAA | 1 cut(s) | 567 |
| BspTNI | GGTCTC | 1 cut(s) | 69 |
| BsrBI | CCGCTC | 1 cut(s) | 490 |
| BsrDI | GCAATG | 4 cut(s) | 684, 888, 1175, 1663 |
| BsrFI | RCCGGY | 2 cut(s) | 210, 275 |
| BsrI | ACTGG | 4 cut(s) | 16, 61, 105, 1759 |
| BssAI | RCCGGY | 2 cut(s) | 210, 275 |
| BssECI | CCNNGG | 2 cut(s) | 410, 864 |
| BssMI | GATC | 6 cut(s) | 31, 438, 510, 709, 1237, 1243 |
| Bst4CI | ACNGT | 1 cut(s) | 319 |
| Bst6I | CTCTTC | 6 cut(s) | 104, 844, 917, 929, 1068, 1490 |
| BstBAI | YACGTR | 1 cut(s) | 242 |
| BstBI | TTCGAA | 1 cut(s) | 567 |
| BstC8I | GCNNGC | 4 cut(s) | 212, 629, 1034, 1096 |
| BstDEI | CTNAG | 5 cut(s) | 35, 126, 338, 363, 1739 |
| BstF5I | GGATG | 4 cut(s) | 184, 502, 950, 1177 |
| BstKTI | GATC | 6 cut(s) | 34, 441, 513, 712, 1240, 1246 |
| BstMAI | GTCTC | 8 cut(s) | 69, 383, 413, 508, 697, 835, 1265, 1701 |
| BstMBI | GATC | 6 cut(s) | 31, 438, 510, 709, 1237, 1243 |
| BstMCI | CGRYCG | 1 cut(s) | 276 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 175, 178, 181, 272, 381, 390, 675, 1114, 1749 |
| BstSCI | CCNGG | 3 cut(s) | 72, 398, 1098 |
| BstSFI | CTRYAG | 2 cut(s) | 634, 1662 |
| BstSLI | GKGCMC | 1 cut(s) | 1034 |
| BstV1I | GCAGC | 9 cut(s) | 52, 181, 184, 187, 190, 193, 661, 1126, 1648 |
| BstV2I | GAAGAC | 4 cut(s) | 18, 599, 622, 852 |
| BstX2I | RGATCY | 2 cut(s) | 31, 438 |
| BstYI | RGATCY | 2 cut(s) | 31, 438 |
| BstZI | CGGCCG | 1 cut(s) | 273 |
| BtrI | CACGTC | 1 cut(s) | 976 |
| BtsCI | GGATG | 4 cut(s) | 184, 502, 950, 1177 |
| BtsI | GCAGTG | 2 cut(s) | 889, 1671 |
| BtsIMutI | CAGTG | 3 cut(s) | 346, 889, 1671 |
| Cac8I | GCNNGC | 4 cut(s) | 212, 629, 1034, 1096 |
| CciI | TCATGA | 7 cut(s) | 45, 198, 250, 1207, 1240, 1246, 1609 |
| Cfr10I | RCCGGY | 2 cut(s) | 210, 275 |
| Cfr13I | GGNCC | 5 cut(s) | 142, 208, 396, 485, 1096 |
| CseI | GACGC | 1 cut(s) | 817 |
| Csp6I | GTAC | 3 cut(s) | 306, 1200, 1338 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 992, 1027 |
| CviQI | GTAC | 3 cut(s) | 306, 1200, 1338 |
| DdeI | CTNAG | 5 cut(s) | 35, 126, 338, 363, 1739 |
| DpnI | GATC | 6 cut(s) | 33, 440, 512, 711, 1239, 1245 |
| DpnII | GATC | 6 cut(s) | 31, 438, 510, 709, 1237, 1243 |
| EaeI | YGGCCR | 4 cut(s) | 75, 273, 407, 1277 |
| EagI | CGGCCG | 1 cut(s) | 273 |
| Eam1104I | CTCTTC | 6 cut(s) | 104, 844, 917, 929, 1068, 1490 |
| EarI | CTCTTC | 6 cut(s) | 104, 844, 917, 929, 1068, 1490 |
| EciI | GGCGGA | 1 cut(s) | 384 |
| Ecl136II | GAGCTC | 1 cut(s) | 97 |
| EclXI | CGGCCG | 1 cut(s) | 273 |
| Eco147I | AGGCCT | 1 cut(s) | 124 |
| Eco24I | GRGCYC | 1 cut(s) | 99 |
| Eco31I | GGTCTC | 1 cut(s) | 69 |
| Eco47I | GGWCC | 1 cut(s) | 396 |
| Eco52I | CGGCCG | 1 cut(s) | 273 |
| Eco53kI | GAGCTC | 1 cut(s) | 97 |
| Eco57I | CTGAAG | 1 cut(s) | 200 |
| Eco72I | CACGTG | 1 cut(s) | 242 |
| EcoICRI | GAGCTC | 1 cut(s) | 97 |
| EcoT22I | ATGCAT | 1 cut(s) | 1177 |
| EcoT38I | GRGCYC | 1 cut(s) | 99 |
| Esp3I | CGTCTC | 2 cut(s) | 697, 835 |
| FauI | CCCGC | 2 cut(s) | 386, 1087 |
| FbaI | TGATCA | 2 cut(s) | 1237, 1243 |
| FokI | GGATG | 4 cut(s) | 171, 509, 957, 1184 |
| FriOI | GRGCYC | 1 cut(s) | 99 |
| FspBI | CTAG | 3 cut(s) | 507, 675, 1203 |
| GsuI | CTGGAG | 2 cut(s) | 377, 455 |
| HapII | CCGG | 9 cut(s) | 74, 140, 211, 276, 399, 442, 612, 1099, 1280 |
| HgaI | GACGC | 1 cut(s) | 817 |
| HpaII | CCGG | 9 cut(s) | 74, 140, 211, 276, 399, 442, 612, 1099, 1280 |
| HphI | GGTGA | 2 cut(s) | 398, 1681 |
| Hpy166II | GTNNAC | 2 cut(s) | 819, 1672 |
| Hpy188I | TCNGA | 6 cut(s) | 90, 219, 844, 868, 897, 1347 |
| Hpy8I | GTNNAC | 2 cut(s) | 819, 1672 |
| Hpy99I | CGWCG | 4 cut(s) | 94, 728, 881, 977 |
| HpyAV | CCTTC | 5 cut(s) | 596, 601, 943, 1495, 1697 |
| HpyCH4III | ACNGT | 1 cut(s) | 319 |
| HpyCH4IV | ACGT | 2 cut(s) | 241, 975 |
| HpyCH4V | TGCA | 6 cut(s) | 555, 979, 1175, 1180, 1434, 1664 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 175, 178, 181, 272, 381, 390, 675, 1114, 1749 |
| HpyF3I | CTNAG | 5 cut(s) | 35, 126, 338, 363, 1739 |
| HpySE526I | ACGT | 2 cut(s) | 241, 975 |
| KroI | GCCGGC | 1 cut(s) | 210 |
| KroNI | GCCGGC | 1 cut(s) | 212 |
| Ksp22I | TGATCA | 2 cut(s) | 1237, 1243 |
| Kzo9I | GATC | 6 cut(s) | 31, 438, 510, 709, 1237, 1243 |
| LguI | GCTCTTC | 1 cut(s) | 104 |
| LmnI | GCTCC | 5 cut(s) | 94, 135, 142, 898, 1105 |
| Lsp1109I | GCAGC | 9 cut(s) | 52, 181, 184, 187, 190, 193, 661, 1126, 1648 |
| LweI | GCATC | 2 cut(s) | 193, 1162 |
| MaeI | CTAG | 3 cut(s) | 507, 675, 1203 |
| MaeII | ACGT | 2 cut(s) | 241, 975 |
| MaeIII | GTNAC | 2 cut(s) | 444, 1529 |
| MalI | GATC | 6 cut(s) | 33, 440, 512, 711, 1239, 1245 |
| MbiI | CCGCTC | 1 cut(s) | 490 |
| MboI | GATC | 6 cut(s) | 31, 438, 510, 709, 1237, 1243 |
| MflI | RGATCY | 2 cut(s) | 31, 438 |
| MhlI | GDGCHC | 2 cut(s) | 99, 1034 |
| MluCI | AATT | 5 cut(s) | 563, 1184, 1298, 1510, 1552 |
| MlyI | GAGTC | 9 cut(s) | 79, 263, 415, 444, 790, 848, 1334, 1556, 1590 |
| MmeI | TCCRAC | 2 cut(s) | 113, 996 |
| Mph1103I | ATGCAT | 1 cut(s) | 1177 |
| MroNI | GCCGGC | 1 cut(s) | 210 |
| MseI | TTAA | 2 cut(s) | 1187, 1293 |
| MslI | CAYNNNNRTG | 2 cut(s) | 203, 1245 |
| MspI | CCGG | 7 cut(s) | 74, 140, 211, 276, 399, 442, 612 |
| MspR9I | CCNGG | 3 cut(s) | 74, 400, 1100 |
| Mva1269I | GAATGC | 1 cut(s) | 1289 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 175, 178, 181, 272, 381, 390, 675, 1114, 1749 |
| NaeI | GCCGGC | 1 cut(s) | 212 |
| NciI | CCSGG | 3 cut(s) | 74, 400, 1100 |
| NdeII | GATC | 6 cut(s) | 31, 438, 510, 709, 1237, 1243 |
| NgoMIV | GCCGGC | 1 cut(s) | 210 |
| NlaIV | GGNNCC | 1 cut(s) | 397 |
| NmeAIII | GCCGAG | 3 cut(s) | 251, 360, 435 |
| NmuCI | GTSAC | 1 cut(s) | 444 |
| NsiI | ATGCAT | 1 cut(s) | 1177 |
| NspV | TTCGAA | 1 cut(s) | 567 |
| PagI | TCATGA | 7 cut(s) | 45, 198, 250, 1207, 1240, 1246, 1609 |
| PceI | AGGCCT | 1 cut(s) | 124 |
| PciSI | GCTCTTC | 1 cut(s) | 104 |
| PctI | GAATGC | 1 cut(s) | 1289 |
| PdiI | GCCGGC | 1 cut(s) | 212 |
| PfeI | GAWTC | 3 cut(s) | 247, 639, 1303 |
| PfoI | TCCNGGA | 1 cut(s) | 398 |
| PleI | GAGTC | 9 cut(s) | 79, 263, 415, 444, 789, 848, 1333, 1555, 1589 |
| PmaCI | CACGTG | 1 cut(s) | 242 |
| PmlI | CACGTG | 1 cut(s) | 242 |
| PpsI | GAGTC | 9 cut(s) | 79, 263, 415, 444, 789, 848, 1333, 1555, 1589 |
| Ppu21I | YACGTR | 1 cut(s) | 242 |
| Psp124BI | GAGCTC | 1 cut(s) | 99 |
| PspCI | CACGTG | 1 cut(s) | 242 |
| PspN4I | GGNNCC | 1 cut(s) | 397 |
| PspPI | GGNCC | 5 cut(s) | 142, 208, 396, 485, 1096 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1612, 1644 |
| PstI | CTGCAG | 1 cut(s) | 1666 |
| PsuI | RGATCY | 2 cut(s) | 31, 438 |
| RsaI | GTAC | 3 cut(s) | 307, 1201, 1339 |
| RsaNI | GTAC | 3 cut(s) | 306, 1200, 1338 |
| RseI | CAYNNNNRTG | 2 cut(s) | 203, 1245 |
| SacI | GAGCTC | 1 cut(s) | 99 |
| SapI | GCTCTTC | 1 cut(s) | 104 |
| SaqAI | TTAA | 2 cut(s) | 1187, 1293 |
| Sau3AI | GATC | 6 cut(s) | 31, 438, 510, 709, 1237, 1243 |
| Sau96I | GGNCC | 5 cut(s) | 142, 208, 396, 485, 1096 |
| ScaI | AGTACT | 2 cut(s) | 1201, 1339 |
| SchI | GAGTC | 9 cut(s) | 79, 263, 415, 444, 790, 848, 1334, 1556, 1590 |
| ScrFI | CCNGG | 3 cut(s) | 74, 400, 1100 |
| SduI | GDGCHC | 2 cut(s) | 99, 1034 |
| SfaNI | GCATC | 2 cut(s) | 193, 1162 |
| SfcI | CTRYAG | 2 cut(s) | 634, 1662 |
| SfuI | TTCGAA | 1 cut(s) | 567 |
| SinI | GGWCC | 1 cut(s) | 396 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 203, 1245 |
| SmlI | CTYRAG | 2 cut(s) | 914, 1037 |
| SmoI | CTYRAG | 2 cut(s) | 914, 1037 |
| SpeI | ACTAGT | 1 cut(s) | 1202 |
| Sse9I | AATT | 5 cut(s) | 563, 1184, 1298, 1510, 1552 |
| SseBI | AGGCCT | 1 cut(s) | 124 |
| SspMI | CTAG | 3 cut(s) | 507, 675, 1203 |
| SstI | GAGCTC | 1 cut(s) | 99 |
| StuI | AGGCCT | 1 cut(s) | 124 |
| StyD4I | CCNGG | 3 cut(s) | 72, 398, 1098 |
| TaaI | ACNGT | 1 cut(s) | 319 |
| TaiI | ACGT | 2 cut(s) | 244, 978 |
| TaqI | TCGA | 6 cut(s) | 453, 567, 833, 849, 972, 1328 |
| TaqII | GACCGA | 1 cut(s) | 249 |
| TasI | AATT | 5 cut(s) | 563, 1184, 1298, 1510, 1552 |
| TatI | WGTACW | 3 cut(s) | 305, 1199, 1337 |
| TauI | GCSGC | 4 cut(s) | 326, 348, 490, 1391 |
| TfiI | GAWTC | 3 cut(s) | 247, 639, 1303 |
| Tru1I | TTAA | 2 cut(s) | 1187, 1293 |
| Tru9I | TTAA | 2 cut(s) | 1187, 1293 |
| TscAI | CASTG | 3 cut(s) | 346, 889, 1671 |
| TseFI | GTSAC | 1 cut(s) | 444 |
| TseI | GCWGC | 9 cut(s) | 40, 169, 172, 175, 178, 181, 649, 1114, 1661 |
| Tsp45I | GTSAC | 1 cut(s) | 444 |
| TspDTI | ATGAA | 9 cut(s) | 62, 239, 513, 921, 935, 1224, 1428, 1616, 1626 |
| TspGWI | ACGGA | 2 cut(s) | 66, 107 |
| TspRI | CASTG | 3 cut(s) | 346, 889, 1671 |
| VpaK11BI | GGWCC | 1 cut(s) | 396 |
| XapI | RAATTY | 2 cut(s) | 563, 1552 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 895 |
| XspI | CTAG | 3 cut(s) | 507, 675, 1203 |
| ZrmI | AGTACT | 2 cut(s) | 1201, 1339 |
| Zsp2I | ATGCAT | 1 cut(s) | 1177 |