Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Homeodomain | PF00046 | 30 - 91 | 5.8e-10 | Homeodomain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 413 |
| AcsI | RAATTY | 2 cut(s) | 177, 526 |
| AfaI | GTAC | 1 cut(s) | 328 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 329, 413 |
| AflIII | ACRYGT | 1 cut(s) | 214 |
| AhlI | ACTAGT | 2 cut(s) | 314, 443 |
| AjnI | CCWGG | 2 cut(s) | 92, 322 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 59, 91 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 304, 336 |
| AluBI | AGCT | 3 cut(s) | 7, 199, 410 |
| AluI | AGCT | 3 cut(s) | 7, 199, 410 |
| Alw26I | GTCTC | 1 cut(s) | 197 |
| Ama87I | CYCGRG | 1 cut(s) | 261 |
| AoxI | GGCC | 1 cut(s) | 404 |
| ApeKI | GCWGC | 2 cut(s) | 50, 293 |
| ApoI | RAATTY | 2 cut(s) | 177, 526 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 383, 415, 416, 448 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 316 |
| AspS9I | GGNCC | 3 cut(s) | 357, 404, 438 |
| AsuC2I | CCSGG | 1 cut(s) | 55 |
| AvaI | CYCGRG | 1 cut(s) | 261 |
| AvaII | GGWCC | 2 cut(s) | 357, 438 |
| BaeGI | GKGCMC | 2 cut(s) | 164, 306 |
| BamHI | GGATCC | 5 cut(s) | 123, 335, 383, 416, 464 |
| BanII | GRGCYC | 1 cut(s) | 262 |
| BauI | CACGAG | 1 cut(s) | 182 |
| BbvI | GCAGC | 2 cut(s) | 62, 280 |
| BccI | CCATC | 2 cut(s) | 26, 395 |
| BceAI | ACGGC | 1 cut(s) | 72 |
| BciT130I | CCWGG | 2 cut(s) | 94, 324 |
| BcnI | CCSGG | 1 cut(s) | 55 |
| BcoDI | GTCTC | 1 cut(s) | 197 |
| BcuI | ACTAGT | 2 cut(s) | 314, 443 |
| BfaI | CTAG | 2 cut(s) | 315, 444 |
| BfmI | CTRYAG | 1 cut(s) | 168 |
| BglII | AGATCT | 1 cut(s) | 186 |
| BisI | GCNGC | 2 cut(s) | 51, 294 |
| BlsI | GCNGC | 2 cut(s) | 52, 295 |
| Bme1390I | CCNGG | 3 cut(s) | 55, 94, 324 |
| Bme18I | GGWCC | 2 cut(s) | 357, 438 |
| BmeT110I | CYCGRG | 1 cut(s) | 261 |
| BmgT120I | GGNCC | 3 cut(s) | 357, 404, 438 |
| BmrFI | CCNGG | 3 cut(s) | 55, 94, 324 |
| BpmI | CTGGAG | 2 cut(s) | 93, 179 |
| BpuEI | CTTGAG | 2 cut(s) | 113, 282 |
| BpuMI | CCSGG | 1 cut(s) | 55 |
| BsaJI | CCNNGG | 1 cut(s) | 306 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 304, 334 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 329, 413 |
| Bse1I | ACTGG | 6 cut(s) | 205, 334, 367, 376, 457, 505 |
| BseBI | CCWGG | 2 cut(s) | 94, 324 |
| BseDI | CCNNGG | 1 cut(s) | 306 |
| BseGI | GGATG | 1 cut(s) | 37 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 329, 413 |
| BseNI | ACTGG | 6 cut(s) | 205, 334, 367, 376, 457, 505 |
| BseSI | GKGCMC | 2 cut(s) | 164, 306 |
| BseXI | GCAGC | 2 cut(s) | 62, 280 |
| BseYI | CCCAGC | 1 cut(s) | 15 |
| BshFI | GGCC | 1 cut(s) | 406 |
| BsiHKCI | CYCGRG | 1 cut(s) | 261 |
| BsiSI | CCGG | 1 cut(s) | 54 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 329, 413 |
| BsmAI | GTCTC | 1 cut(s) | 197 |
| BsnI | GGCC | 1 cut(s) | 406 |
| BsoBI | CYCGRG | 1 cut(s) | 261 |
| Bsp1286I | GDGCHC | 3 cut(s) | 164, 262, 306 |
| Bsp19I | CCATGG | 1 cut(s) | 306 |
| BspANI | GGCC | 1 cut(s) | 406 |
| BsrI | ACTGG | 6 cut(s) | 205, 334, 367, 376, 457, 505 |
| BssECI | CCNNGG | 1 cut(s) | 306 |
| BssSI | CACGAG | 1 cut(s) | 182 |
| BssT1I | CCWWGG | 1 cut(s) | 306 |
| Bst2BI | CACGAG | 1 cut(s) | 182 |
| Bst2UI | CCWGG | 2 cut(s) | 94, 324 |
| Bst6I | CTCTTC | 1 cut(s) | 272 |
| BstC8I | GCNNGC | 1 cut(s) | 408 |
| BstDSI | CCRYGG | 1 cut(s) | 306 |
| BstF5I | GGATG | 1 cut(s) | 37 |
| BstMAI | GTCTC | 1 cut(s) | 197 |
| BstNI | CCWGG | 2 cut(s) | 94, 324 |
| BstNSI | RCATGY | 1 cut(s) | 218 |
| BstSCI | CCNGG | 3 cut(s) | 53, 92, 322 |
| BstSFI | CTRYAG | 1 cut(s) | 168 |
| BstSLI | GKGCMC | 2 cut(s) | 164, 306 |
| BstV1I | GCAGC | 2 cut(s) | 62, 280 |
| BstX2I | RGATCY | 7 cut(s) | 123, 133, 186, 335, 383, 416, 464 |
| BstYI | RGATCY | 7 cut(s) | 123, 133, 186, 335, 383, 416, 464 |
| BsuRI | GGCC | 1 cut(s) | 406 |
| BtgI | CCRYGG | 1 cut(s) | 306 |
| BtsCI | GGATG | 1 cut(s) | 37 |
| BtsI | GCAGTG | 1 cut(s) | 489 |
| BtsIMutI | CAGTG | 2 cut(s) | 360, 489 |
| Cac8I | GCNNGC | 1 cut(s) | 408 |
| Cfr13I | GGNCC | 3 cut(s) | 357, 404, 438 |
| Csp6I | GTAC | 1 cut(s) | 327 |
| CviAII | CATG | 2 cut(s) | 215, 307 |
| CviJI | RGCY | 8 cut(s) | 7, 53, 87, 199, 260, 293, 406, 410 |
| CviKI_1 | RGCY | 8 cut(s) | 7, 53, 87, 199, 260, 293, 406, 410 |
| CviQI | GTAC | 1 cut(s) | 327 |
| Eam1104I | CTCTTC | 1 cut(s) | 272 |
| EarI | CTCTTC | 1 cut(s) | 272 |
| Eco130I | CCWWGG | 1 cut(s) | 306 |
| Eco24I | GRGCYC | 1 cut(s) | 262 |
| Eco47I | GGWCC | 2 cut(s) | 357, 438 |
| Eco88I | CYCGRG | 1 cut(s) | 261 |
| EcoRII | CCWGG | 2 cut(s) | 92, 322 |
| EcoT14I | CCWWGG | 1 cut(s) | 306 |
| EcoT38I | GRGCYC | 1 cut(s) | 262 |
| ErhI | CCWWGG | 1 cut(s) | 306 |
| FaeI | CATG | 2 cut(s) | 218, 310 |
| FaiI | YATR | 4 cut(s) | 210, 216, 308, 538 |
| FatI | CATG | 2 cut(s) | 214, 306 |
| Fnu4HI | GCNGC | 2 cut(s) | 51, 294 |
| FokI | GGATG | 1 cut(s) | 44 |
| FriOI | GRGCYC | 1 cut(s) | 262 |
| Fsp4HI | GCNGC | 2 cut(s) | 51, 294 |
| FspBI | CTAG | 2 cut(s) | 315, 444 |
| GluI | GCNGC | 2 cut(s) | 51, 294 |
| GsaI | CCCAGC | 1 cut(s) | 19 |
| GsuI | CTGGAG | 2 cut(s) | 93, 179 |
| HaeIII | GGCC | 1 cut(s) | 406 |
| HapII | CCGG | 1 cut(s) | 54 |
| Hin1II | CATG | 2 cut(s) | 218, 310 |
| HpaII | CCGG | 1 cut(s) | 54 |
| Hpy166II | GTNNAC | 2 cut(s) | 360, 441 |
| Hpy188III | TCNNGA | 4 cut(s) | 110, 182, 247, 263 |
| Hpy8I | GTNNAC | 2 cut(s) | 360, 441 |
| HpyAV | CCTTC | 1 cut(s) | 503 |
| HpyCH4V | TGCA | 1 cut(s) | 285 |
| Hsp92II | CATG | 2 cut(s) | 218, 310 |
| LmnI | GCTCC | 1 cut(s) | 4 |
| Lsp1109I | GCAGC | 2 cut(s) | 62, 280 |
| MaeI | CTAG | 2 cut(s) | 315, 444 |
| MboII | GAAGA | 1 cut(s) | 289 |
| MflI | RGATCY | 7 cut(s) | 123, 133, 186, 335, 383, 416, 464 |
| MhlI | GDGCHC | 3 cut(s) | 164, 262, 306 |
| MluCI | AATT | 6 cut(s) | 177, 349, 397, 430, 478, 526 |
| MnlI | CCTC | 5 cut(s) | 22, 29, 137, 214, 273 |
| MroXI | GAANNNNTTC | 1 cut(s) | 316 |
| MseI | TTAA | 2 cut(s) | 156, 524 |
| MspA1I | CMGCKG | 2 cut(s) | 199, 410 |
| MspI | CCGG | 1 cut(s) | 54 |
| MspR9I | CCNGG | 3 cut(s) | 55, 94, 324 |
| MvaI | CCWGG | 2 cut(s) | 94, 324 |
| NciI | CCSGG | 1 cut(s) | 55 |
| NcoI | CCATGG | 1 cut(s) | 306 |
| NlaIII | CATG | 2 cut(s) | 218, 310 |
| NspI | RCATGY | 1 cut(s) | 218 |
| PaeR7I | CTCGAG | 1 cut(s) | 261 |
| PciI | ACATGT | 1 cut(s) | 214 |
| PdmI | GAANNNNTTC | 1 cut(s) | 316 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 413 |
| PkrI | GCNGC | 2 cut(s) | 52, 295 |
| PscI | ACATGT | 1 cut(s) | 214 |
| Psp6I | CCWGG | 2 cut(s) | 92, 322 |
| PspFI | CCCAGC | 1 cut(s) | 15 |
| PspGI | CCWGG | 2 cut(s) | 92, 322 |
| PspPI | GGNCC | 3 cut(s) | 357, 404, 438 |
| PsuI | RGATCY | 7 cut(s) | 123, 133, 186, 335, 383, 416, 464 |
| PvuII | CAGCTG | 2 cut(s) | 199, 410 |
| RsaI | GTAC | 1 cut(s) | 328 |
| RsaNI | GTAC | 1 cut(s) | 327 |
| SaqAI | TTAA | 2 cut(s) | 156, 524 |
| SatI | GCNGC | 2 cut(s) | 51, 294 |
| Sau96I | GGNCC | 3 cut(s) | 357, 404, 438 |
| ScrFI | CCNGG | 3 cut(s) | 55, 94, 324 |
| SduI | GDGCHC | 3 cut(s) | 164, 262, 306 |
| SetI | ASST | 5 cut(s) | 9, 98, 201, 284, 412 |
| SfcI | CTRYAG | 1 cut(s) | 168 |
| Sfr274I | CTCGAG | 1 cut(s) | 261 |
| SinI | GGWCC | 2 cut(s) | 357, 438 |
| SlaI | CTCGAG | 1 cut(s) | 261 |
| SmlI | CTYRAG | 3 cut(s) | 128, 261, 297 |
| SmoI | CTYRAG | 3 cut(s) | 128, 261, 297 |
| SpeI | ACTAGT | 2 cut(s) | 314, 443 |
| Sse9I | AATT | 6 cut(s) | 177, 349, 397, 430, 478, 526 |
| SspMI | CTAG | 2 cut(s) | 315, 444 |
| StyD4I | CCNGG | 3 cut(s) | 53, 92, 322 |
| StyI | CCWWGG | 1 cut(s) | 306 |
| TaqI | TCGA | 3 cut(s) | 27, 262, 390 |
| TasI | AATT | 6 cut(s) | 177, 349, 397, 430, 478, 526 |
| Tru1I | TTAA | 2 cut(s) | 156, 524 |
| Tru9I | TTAA | 2 cut(s) | 156, 524 |
| TscAI | CASTG | 2 cut(s) | 367, 496 |
| TseI | GCWGC | 2 cut(s) | 50, 293 |
| TspDTI | ATGAA | 3 cut(s) | 290, 522, 525 |
| TspRI | CASTG | 2 cut(s) | 367, 496 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 413 |
| VpaK11BI | GGWCC | 2 cut(s) | 357, 438 |
| XapI | RAATTY | 2 cut(s) | 177, 526 |
| XceI | RCATGY | 1 cut(s) | 218 |
| XhoI | CTCGAG | 1 cut(s) | 261 |
| XmnI | GAANNNNTTC | 1 cut(s) | 316 |
| XspI | CTAG | 2 cut(s) | 315, 444 |