ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 930 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 818 |
| AciI | CCGC | 2 cut(s) | 331, 476 |
| AclWI | GGATC | 3 cut(s) | 348, 701, 917 |
| AcoI | YGGCCR | 1 cut(s) | 941 |
| AcsI | RAATTY | 3 cut(s) | 321, 432, 448 |
| AfaI | GTAC | 1 cut(s) | 470 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 838 |
| AflII | CTTAAG | 1 cut(s) | 1030 |
| AgsI | TTSAA | 4 cut(s) | 382, 439, 807, 1183 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 676, 708 |
| AluBI | AGCT | 8 cut(s) | 23, 104, 130, 461, 795, 803, 1035, 1200 |
| AluI | AGCT | 8 cut(s) | 23, 104, 130, 461, 795, 803, 1035, 1200 |
| Alw26I | GTCTC | 2 cut(s) | 762, 873 |
| AlwI | GGATC | 3 cut(s) | 348, 701, 917 |
| Ama87I | CYCGRG | 1 cut(s) | 876 |
| AoxI | GGCC | 2 cut(s) | 524, 941 |
| ApeKI | GCWGC | 3 cut(s) | 104, 244, 1139 |
| ApoI | RAATTY | 3 cut(s) | 321, 432, 448 |
| AspS9I | GGNCC | 1 cut(s) | 525 |
| AsuHPI | GGTGA | 2 cut(s) | 157, 506 |
| AvaI | CYCGRG | 1 cut(s) | 876 |
| BalI | TGGCCA | 1 cut(s) | 943 |
| BbsI | GAAGAC | 1 cut(s) | 572 |
| BbvI | GCAGC | 3 cut(s) | 91, 231, 1126 |
| BccI | CCATC | 2 cut(s) | 355, 1107 |
| BceAI | ACGGC | 1 cut(s) | 1179 |
| BclI | TGATCA | 1 cut(s) | 192 |
| BcoDI | GTCTC | 2 cut(s) | 762, 873 |
| BfaI | CTAG | 4 cut(s) | 462, 558, 648, 1020 |
| BfrI | CTTAAG | 1 cut(s) | 1030 |
| BglII | AGATCT | 1 cut(s) | 265 |
| BisI | GCNGC | 3 cut(s) | 105, 245, 1140 |
| BlsI | GCNGC | 3 cut(s) | 106, 246, 1141 |
| BmeT110I | CYCGRG | 1 cut(s) | 876 |
| BmgT120I | GGNCC | 1 cut(s) | 525 |
| BmiI | GGNNCC | 3 cut(s) | 216, 681, 906 |
| BmsI | GCATC | 2 cut(s) | 399, 792 |
| BpiI | GAAGAC | 1 cut(s) | 572 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 772, 804 |
| BpmI | CTGGAG | 2 cut(s) | 894, 1106 |
| BpuEI | CTTGAG | 1 cut(s) | 655 |
| Bsa29I | ATCGAT | 1 cut(s) | 343 |
| BsaAI | YACGTR | 1 cut(s) | 575 |
| BsaJI | CCNNGG | 2 cut(s) | 888, 1125 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 594, 624 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 838 |
| Bse1I | ACTGG | 3 cut(s) | 398, 758, 1150 |
| Bse3DI | GCAATG | 1 cut(s) | 511 |
| BseCI | ATCGAT | 1 cut(s) | 343 |
| BseDI | CCNNGG | 2 cut(s) | 888, 1125 |
| BseGI | GGATG | 2 cut(s) | 261, 783 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 838 |
| BseMI | GCAATG | 1 cut(s) | 511 |
| BseMII | CTCAG | 2 cut(s) | 782, 1228 |
| BseNI | ACTGG | 3 cut(s) | 398, 758, 1150 |
| BseRI | GAGGAG | 2 cut(s) | 654, 897 |
| BseXI | GCAGC | 3 cut(s) | 91, 231, 1126 |
| BsgI | GTGCAG | 1 cut(s) | 195 |
| BshFI | GGCC | 2 cut(s) | 526, 943 |
| BshVI | ATCGAT | 1 cut(s) | 343 |
| BsiHKCI | CYCGRG | 1 cut(s) | 876 |
| BslFI | GGGAC | 1 cut(s) | 740 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 838 |
| BsmAI | GTCTC | 2 cut(s) | 762, 873 |
| BsmBI | CGTCTC | 1 cut(s) | 873 |
| BsmFI | GGGAC | 1 cut(s) | 740 |
| BsmI | GAATGC | 1 cut(s) | 351 |
| BsnI | GGCC | 2 cut(s) | 526, 943 |
| BsoBI | CYCGRG | 1 cut(s) | 876 |
| Bsp1407I | TGTACA | 1 cut(s) | 468 |
| Bsp143I | GATC | 5 cut(s) | 192, 265, 340, 706, 922 |
| BspACI | CCGC | 2 cut(s) | 331, 476 |
| BspANI | GGCC | 2 cut(s) | 526, 943 |
| BspCNI | CTCAG | 2 cut(s) | 783, 1227 |
| BspDI | ATCGAT | 1 cut(s) | 343 |
| BspLI | GGNNCC | 3 cut(s) | 216, 681, 906 |
| BspPI | GGATC | 3 cut(s) | 348, 701, 917 |
| BspTI | CTTAAG | 1 cut(s) | 1030 |
| BsrDI | GCAATG | 1 cut(s) | 511 |
| BsrGI | TGTACA | 1 cut(s) | 468 |
| BsrI | ACTGG | 3 cut(s) | 398, 758, 1150 |
| BssECI | CCNNGG | 2 cut(s) | 888, 1125 |
| BssMI | GATC | 5 cut(s) | 192, 265, 340, 706, 922 |
| BssT1I | CCWWGG | 2 cut(s) | 888, 1125 |
| Bst4CI | ACNGT | 2 cut(s) | 214, 236 |
| BstAFI | CTTAAG | 1 cut(s) | 1030 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 986 |
| BstAUI | TGTACA | 1 cut(s) | 468 |
| BstBAI | YACGTR | 1 cut(s) | 575 |
| BstC8I | GCNNGC | 6 cut(s) | 414, 587, 797, 801, 945, 957 |
| BstDEI | CTNAG | 2 cut(s) | 791, 1214 |
| BstF5I | GGATG | 2 cut(s) | 261, 783 |
| BstKTI | GATC | 5 cut(s) | 195, 268, 343, 709, 925 |
| BstMAI | GTCTC | 2 cut(s) | 762, 873 |
| BstMBI | GATC | 5 cut(s) | 192, 265, 340, 706, 922 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 413, 418, 911, 986 |
| BstNSI | RCATGY | 3 cut(s) | 244, 959, 989 |
| BstV1I | GCAGC | 3 cut(s) | 91, 231, 1126 |
| BstV2I | GAAGAC | 1 cut(s) | 572 |
| BstX2I | RGATCY | 1 cut(s) | 265 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 951 |
| BstYI | RGATCY | 1 cut(s) | 265 |
| Bsu15I | ATCGAT | 1 cut(s) | 343 |
| BsuRI | GGCC | 2 cut(s) | 526, 943 |
| BsuTUI | ATCGAT | 1 cut(s) | 343 |
| BtgZI | GCGATG | 1 cut(s) | 422 |
| BtsCI | GGATG | 2 cut(s) | 261, 783 |
| BtsI | GCAGTG | 1 cut(s) | 734 |
| BtsIMutI | CAGTG | 3 cut(s) | 391, 734, 765 |
| Cac8I | GCNNGC | 6 cut(s) | 414, 587, 797, 801, 945, 957 |
| Cfr13I | GGNCC | 1 cut(s) | 525 |
| ClaI | ATCGAT | 1 cut(s) | 343 |
| Csp6I | GTAC | 1 cut(s) | 469 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 123, 158 |
| CviAII | CATG | 6 cut(s) | 56, 241, 620, 956, 986, 990 |
| CviQI | GTAC | 1 cut(s) | 469 |
| DdeI | CTNAG | 2 cut(s) | 791, 1214 |
| DpnI | GATC | 5 cut(s) | 194, 267, 342, 708, 924 |
| DpnII | GATC | 5 cut(s) | 192, 265, 340, 706, 922 |
| DraI | TTTAAA | 1 cut(s) | 120 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 818 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 818 |
| EaeI | YGGCCR | 1 cut(s) | 941 |
| Eco130I | CCWWGG | 2 cut(s) | 888, 1125 |
| Eco88I | CYCGRG | 1 cut(s) | 876 |
| EcoO109I | RGGNCCY | 1 cut(s) | 525 |
| EcoT14I | CCWWGG | 2 cut(s) | 888, 1125 |
| EcoT22I | ATGCAT | 2 cut(s) | 353, 991 |
| ErhI | CCWWGG | 2 cut(s) | 888, 1125 |
| Esp3I | CGTCTC | 1 cut(s) | 873 |
| FaeI | CATG | 6 cut(s) | 59, 244, 623, 959, 989, 993 |
| FaqI | GGGAC | 1 cut(s) | 740 |
| FatI | CATG | 6 cut(s) | 55, 240, 619, 955, 985, 989 |
| FauNDI | CATATG | 1 cut(s) | 548 |
| FbaI | TGATCA | 1 cut(s) | 192 |
| Fnu4HI | GCNGC | 3 cut(s) | 105, 245, 1140 |
| FokI | GGATG | 2 cut(s) | 268, 770 |
| Fsp4HI | GCNGC | 3 cut(s) | 105, 245, 1140 |
| FspBI | CTAG | 4 cut(s) | 462, 558, 648, 1020 |
| GluI | GCNGC | 3 cut(s) | 105, 245, 1140 |
| GsuI | CTGGAG | 2 cut(s) | 894, 1106 |
| HaeIII | GGCC | 2 cut(s) | 526, 943 |
| Hin1II | CATG | 6 cut(s) | 59, 244, 623, 959, 989, 993 |
| HindIII | AAGCTT | 1 cut(s) | 1198 |
| HinfI | GANTC | 4 cut(s) | 302, 385, 605, 1095 |
| HphI | GGTGA | 2 cut(s) | 157, 506 |
| Hpy188I | TCNGA | 2 cut(s) | 697, 792 |
| Hpy188III | TCNNGA | 3 cut(s) | 190, 382, 878 |
| HpyAV | CCTTC | 5 cut(s) | 133, 359, 666, 832, 1177 |
| HpyCH4III | ACNGT | 2 cut(s) | 214, 236 |
| HpyCH4IV | ACGT | 3 cut(s) | 574, 729, 882 |
| HpyCH4V | TGCA | 8 cut(s) | 176, 271, 284, 351, 416, 509, 755, 989 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 413, 418, 911, 986 |
| HpyF3I | CTNAG | 2 cut(s) | 791, 1214 |
| HpySE526I | ACGT | 3 cut(s) | 574, 729, 882 |
| Hsp92II | CATG | 6 cut(s) | 59, 244, 623, 959, 989, 993 |
| Ksp22I | TGATCA | 1 cut(s) | 192 |
| Kzo9I | GATC | 5 cut(s) | 192, 265, 340, 706, 922 |
| LmnI | GCTCC | 3 cut(s) | 685, 910, 1040 |
| Lsp1109I | GCAGC | 3 cut(s) | 91, 231, 1126 |
| LweI | GCATC | 2 cut(s) | 399, 792 |
| MaeI | CTAG | 4 cut(s) | 462, 558, 648, 1020 |
| MaeII | ACGT | 3 cut(s) | 574, 729, 882 |
| MaeIII | GTNAC | 3 cut(s) | 236, 570, 730 |
| MalI | GATC | 5 cut(s) | 194, 267, 342, 708, 924 |
| MboI | GATC | 5 cut(s) | 192, 265, 340, 706, 922 |
| MboII | GAAGA | 5 cut(s) | 102, 275, 380, 572, 651 |
| MfeI | CAATTG | 2 cut(s) | 275, 918 |
| MflI | RGATCY | 1 cut(s) | 265 |
| MlsI | TGGCCA | 1 cut(s) | 943 |
| MluNI | TGGCCA | 1 cut(s) | 943 |
| MlyI | GAGTC | 2 cut(s) | 614, 1104 |
| MmeI | TCCRAC | 1 cut(s) | 707 |
| MnlI | CCTC | 8 cut(s) | 362, 538, 547, 670, 675, 679, 798, 918 |
| Mox20I | TGGCCA | 1 cut(s) | 943 |
| Mph1103I | ATGCAT | 2 cut(s) | 353, 991 |
| MscI | TGGCCA | 1 cut(s) | 943 |
| MseI | TTAA | 7 cut(s) | 119, 399, 741, 1031, 1196, 1230, 1240 |
| MslI | CAYNNNNRTG | 1 cut(s) | 994 |
| Msp20I | TGGCCA | 1 cut(s) | 943 |
| MspA1I | CMGCKG | 1 cut(s) | 104 |
| MspCI | CTTAAG | 1 cut(s) | 1030 |
| MunI | CAATTG | 2 cut(s) | 275, 918 |
| Mva1269I | GAATGC | 1 cut(s) | 351 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 413, 418, 911, 986 |
| NdeI | CATATG | 1 cut(s) | 548 |
| NdeII | GATC | 5 cut(s) | 192, 265, 340, 706, 922 |
| NlaIII | CATG | 6 cut(s) | 59, 244, 623, 959, 989, 993 |
| NlaIV | GGNNCC | 3 cut(s) | 216, 681, 906 |
| NsiI | ATGCAT | 2 cut(s) | 353, 991 |
| NspI | RCATGY | 3 cut(s) | 244, 959, 989 |
| PaeI | GCATGC | 1 cut(s) | 959 |
| PaeR7I | CTCGAG | 1 cut(s) | 876 |
| PctI | GAATGC | 1 cut(s) | 351 |
| PfeI | GAWTC | 2 cut(s) | 302, 385 |
| PkrI | GCNGC | 3 cut(s) | 106, 246, 1141 |
| PleI | GAGTC | 2 cut(s) | 613, 1103 |
| PpsI | GAGTC | 2 cut(s) | 613, 1103 |
| Ppu21I | YACGTR | 1 cut(s) | 575 |
| PsiI | TTATAA | 1 cut(s) | 930 |
| PspN4I | GGNNCC | 3 cut(s) | 216, 681, 906 |
| PspPI | GGNCC | 1 cut(s) | 525 |
| PsuI | RGATCY | 1 cut(s) | 265 |
| PvuII | CAGCTG | 1 cut(s) | 104 |
| RsaI | GTAC | 1 cut(s) | 470 |
| RsaNI | GTAC | 1 cut(s) | 469 |
| RseI | CAYNNNNRTG | 1 cut(s) | 994 |
| SaqAI | TTAA | 7 cut(s) | 119, 399, 741, 1031, 1196, 1230, 1240 |
| SatI | GCNGC | 3 cut(s) | 105, 245, 1140 |
| Sau3AI | GATC | 5 cut(s) | 192, 265, 340, 706, 922 |
| Sau96I | GGNCC | 1 cut(s) | 525 |
| SchI | GAGTC | 2 cut(s) | 614, 1104 |
| SfaNI | GCATC | 2 cut(s) | 399, 792 |
| Sfr274I | CTCGAG | 1 cut(s) | 876 |
| SlaI | CTCGAG | 1 cut(s) | 876 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 994 |
| SmlI | CTYRAG | 3 cut(s) | 670, 876, 1030 |
| SmoI | CTYRAG | 3 cut(s) | 670, 876, 1030 |
| SphI | GCATGC | 1 cut(s) | 959 |
| SsiI | CCGC | 2 cut(s) | 331, 476 |
| SspI | AATATT | 1 cut(s) | 1009 |
| SspMI | CTAG | 4 cut(s) | 462, 558, 648, 1020 |
| StyI | CCWWGG | 2 cut(s) | 888, 1125 |
| TaaI | ACNGT | 2 cut(s) | 214, 236 |
| TaiI | ACGT | 3 cut(s) | 577, 732, 885 |
| TaqI | TCGA | 2 cut(s) | 343, 877 |
| TatI | WGTACW | 1 cut(s) | 468 |
| TfiI | GAWTC | 2 cut(s) | 302, 385 |
| Tru1I | TTAA | 7 cut(s) | 119, 399, 741, 1031, 1196, 1230, 1240 |
| Tru9I | TTAA | 7 cut(s) | 119, 399, 741, 1031, 1196, 1230, 1240 |
| TscAI | CASTG | 3 cut(s) | 398, 741, 765 |
| TseI | GCWGC | 3 cut(s) | 104, 244, 1139 |
| TspDTI | ATGAA | 3 cut(s) | 72, 245, 314 |
| TspGWI | ACGGA | 1 cut(s) | 1190 |
| TspRI | CASTG | 3 cut(s) | 398, 741, 765 |
| Vha464I | CTTAAG | 1 cut(s) | 1030 |
| XapI | RAATTY | 3 cut(s) | 321, 432, 448 |
| XceI | RCATGY | 3 cut(s) | 244, 959, 989 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1045 |
| XhoI | CTCGAG | 1 cut(s) | 876 |
| XspI | CTAG | 4 cut(s) | 462, 558, 648, 1020 |
| Zsp2I | ATGCAT | 2 cut(s) | 353, 991 |