ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 183 - 231 | 1.2e-07 | Zinc knuckle |
| Exo_endo_phos | PF03372 | 529 - 693 | 6.9e-08 | Endonuclease/Exonuclease/phosphatase family |
| zf-RVT | PF13966 | 1085 - 1158 | 1.3e-13 | zinc-binding in reverse transcriptase |
| RVT_3 | PF13456 | 1241 - 1356 | 4.9e-20 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 405, 598 |
| AatII | GACGTC | 1 cut(s) | 3431 |
| Acc36I | ACCTGC | 1 cut(s) | 730 |
| Acc65I | GGTACC | 1 cut(s) | 2925 |
| AccB1I | GGYRCC | 2 cut(s) | 2925, 4092 |
| AccBSI | CCGCTC | 1 cut(s) | 1108 |
| AccI | GTMKAC | 2 cut(s) | 602, 3245 |
| AccII | CGCG | 3 cut(s) | 2265, 3941, 4192 |
| AccIII | TCCGGA | 2 cut(s) | 3142, 4108 |
| AcoI | YGGCCR | 2 cut(s) | 812, 1323 |
| AcsI | RAATTY | 5 cut(s) | 699, 920, 2919, 3262, 3712 |
| AcuI | CTGAAG | 2 cut(s) | 299, 2600 |
| AcyI | GRCGYC | 3 cut(s) | 1015, 3242, 3428 |
| AdeI | CACNNNGTG | 2 cut(s) | 1497, 3661 |
| AfaI | GTAC | 7 cut(s) | 728, 808, 1272, 1795, 2568, 2927, 2989 |
| AfeI | AGCGCT | 1 cut(s) | 614 |
| AflII | CTTAAG | 1 cut(s) | 3674 |
| AgeI | ACCGGT | 1 cut(s) | 593 |
| AjiI | CACGTC | 4 cut(s) | 553, 1472, 1761, 2932 |
| AjnI | CCWGG | 7 cut(s) | 621, 780, 2229, 3257, 3507, 3706, 4238 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1178, 1210 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1062, 1094 |
| Alw21I | GWGCWC | 6 cut(s) | 322, 714, 1477, 2359, 2695, 2736 |
| Alw26I | GTCTC | 5 cut(s) | 1812, 3419, 3545, 3570, 3675 |
| Ama87I | CYCGRG | 5 cut(s) | 903, 1811, 1936, 2109, 2325 |
| Aor13HI | TCCGGA | 2 cut(s) | 3142, 4108 |
| Aor51HI | AGCGCT | 1 cut(s) | 614 |
| AoxI | GGCC | 8 cut(s) | 812, 1323, 1798, 1859, 2037, 3178, 3636, 3831 |
| ApeKI | GCWGC | 7 cut(s) | 1387, 2389, 2443, 3304, 3737, 3740, 4151 |
| ApoI | RAATTY | 5 cut(s) | 699, 920, 2919, 3262, 3712 |
| AseI | ATTAAT | 1 cut(s) | 4209 |
| AsiGI | ACCGGT | 1 cut(s) | 593 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 636 |
| Asp718I | GGTACC | 1 cut(s) | 2925 |
| AspA2I | CCTAGG | 1 cut(s) | 4096 |
| AspLEI | GCGC | 6 cut(s) | 615, 871, 2267, 2772, 3373, 3941 |
| AsuC2I | CCSGG | 3 cut(s) | 404, 816, 1112 |
| AsuHPI | GGTGA | 9 cut(s) | 76, 1041, 1126, 1162, 1693, 2137, 2486, 2651, 3901 |
| AsuII | TTCGAA | 1 cut(s) | 1573 |
| AvaI | CYCGRG | 5 cut(s) | 903, 1811, 1936, 2109, 2325 |
| AvrII | CCTAGG | 1 cut(s) | 4096 |
| AxyI | CCTNAGG | 2 cut(s) | 1835, 3765 |
| BaeGI | GKGCMC | 2 cut(s) | 3421, 3787 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3051, 3084 |
| BalI | TGGCCA | 1 cut(s) | 1325 |
| BamHI | GGATCC | 3 cut(s) | 180, 393, 2973 |
| BanI | GGYRCC | 2 cut(s) | 2925, 4092 |
| BanII | GRGCYC | 4 cut(s) | 322, 714, 2359, 2736 |
| BauI | CACGAG | 2 cut(s) | 1492, 2423 |
| BbsI | GAAGAC | 4 cut(s) | 854, 1193, 1833, 2524 |
| Bbv12I | GWGCWC | 6 cut(s) | 322, 714, 1477, 2359, 2695, 2736 |
| BbvCI | CCTCAGC | 1 cut(s) | 2573 |
| BbvI | GCAGC | 7 cut(s) | 1399, 2401, 2455, 3316, 3724, 3727, 4138 |
| BccI | CCATC | 8 cut(s) | 96, 793, 944, 1876, 2836, 3067, 3541, 3660 |
| BceAI | ACGGC | 3 cut(s) | 234, 827, 1054 |
| BciT130I | CCWGG | 7 cut(s) | 623, 782, 2231, 3259, 3509, 3708, 4240 |
| BciVI | GTATCC | 1 cut(s) | 439 |
| BclI | TGATCA | 2 cut(s) | 2374, 3148 |
| BcnI | CCSGG | 3 cut(s) | 404, 816, 1112 |
| BcoDI | GTCTC | 5 cut(s) | 1812, 3419, 3545, 3570, 3675 |
| BfmI | CTRYAG | 1 cut(s) | 330 |
| BfoI | RGCGCY | 2 cut(s) | 616, 872 |
| BfrI | CTTAAG | 1 cut(s) | 3674 |
| BfuAI | ACCTGC | 1 cut(s) | 730 |
| BfuI | GTATCC | 1 cut(s) | 439 |
| BglII | AGATCT | 2 cut(s) | 1118, 4138 |
| BisI | GCNGC | 8 cut(s) | 235, 1388, 2390, 2444, 3305, 3738, 3741, 4152 |
| BlnI | CCTAGG | 1 cut(s) | 4096 |
| BlpI | GCTNAGC | 1 cut(s) | 4230 |
| BlsI | GCNGC | 8 cut(s) | 236, 1389, 2391, 2445, 3306, 3739, 3742, 4153 |
| BmeT110I | CYCGRG | 5 cut(s) | 903, 1811, 1936, 2109, 2325 |
| BmgBI | CACGTC | 4 cut(s) | 553, 1472, 1761, 2932 |
| BmrI | ACTGGG | 3 cut(s) | 459, 1176, 3618 |
| BmsI | GCATC | 5 cut(s) | 57, 1573, 2158, 2854, 3382 |
| BmuI | ACTGGG | 3 cut(s) | 459, 1176, 3618 |
| BpiI | GAAGAC | 4 cut(s) | 854, 1193, 1833, 2524 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 3107, 3139, 3655, 3687 |
| BpmI | CTGGAG | 3 cut(s) | 644, 764, 3593 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1785, 2573 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 4230 |
| Bpu14I | TTCGAA | 1 cut(s) | 1573 |
| BpuEI | CTTGAG | 3 cut(s) | 2026, 2795, 3323 |
| BpuMI | CCSGG | 3 cut(s) | 404, 816, 1112 |
| BsaHI | GRCGYC | 3 cut(s) | 1015, 3242, 3428 |
| BsaI | GGTCTC | 1 cut(s) | 3675 |
| BsaWI | WCCGGW | 6 cut(s) | 593, 1051, 1339, 1942, 3142, 4108 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 1965, 1995, 2144, 2174, 3238, 3268, 3715, 3745 |
| Bse118I | RCCGGY | 2 cut(s) | 415, 593 |
| Bse1I | ACTGG | 8 cut(s) | 133, 454, 856, 1171, 1723, 1998, 3536, 3613 |
| Bse21I | CCTNAGG | 2 cut(s) | 1835, 3765 |
| Bse3DI | GCAATG | 3 cut(s) | 3378, 3554, 3930 |
| BseAI | TCCGGA | 2 cut(s) | 3142, 4108 |
| BseBI | CCWGG | 7 cut(s) | 623, 782, 2231, 3259, 3509, 3708, 4240 |
| BseGI | GGATG | 4 cut(s) | 988, 2869, 3078, 3151 |
| BseMI | GCAATG | 3 cut(s) | 3378, 3554, 3930 |
| BseMII | CTCAG | 8 cut(s) | 374, 1434, 1799, 2564, 3581, 3756, 3921, 4221 |
| BseNI | ACTGG | 8 cut(s) | 133, 454, 856, 1171, 1723, 1998, 3536, 3613 |
| BseRI | GAGGAG | 4 cut(s) | 923, 991, 994, 2165 |
| BseSI | GKGCMC | 2 cut(s) | 3421, 3787 |
| BseX3I | CGGCCG | 1 cut(s) | 812 |
| BseXI | GCAGC | 7 cut(s) | 1399, 2401, 2455, 3316, 3724, 3727, 4138 |
| BseYI | CCCAGC | 2 cut(s) | 1604, 3847 |
| BsgI | GTGCAG | 4 cut(s) | 461, 2408, 3323, 3499 |
| Bsh1236I | CGCG | 3 cut(s) | 2265, 3941, 4192 |
| Bsh1285I | CGRYCG | 2 cut(s) | 594, 815 |
| BshFI | GGCC | 8 cut(s) | 814, 1325, 1800, 1861, 2039, 3180, 3638, 3833 |
| BshNI | GGYRCC | 2 cut(s) | 2925, 4092 |
| BshTI | ACCGGT | 1 cut(s) | 593 |
| BsiEI | CGRYCG | 2 cut(s) | 594, 815 |
| BsiHKAI | GWGCWC | 6 cut(s) | 322, 714, 1477, 2359, 2695, 2736 |
| BsiHKCI | CYCGRG | 5 cut(s) | 903, 1811, 1936, 2109, 2325 |
| BsiWI | CGTACG | 1 cut(s) | 726 |
| BslFI | GGGAC | 6 cut(s) | 1249, 1470, 1778, 2915, 4115, 4168 |
| BsmAI | GTCTC | 5 cut(s) | 1812, 3419, 3545, 3570, 3675 |
| BsmBI | CGTCTC | 1 cut(s) | 3419 |
| BsmFI | GGGAC | 6 cut(s) | 1249, 1470, 1778, 2915, 4115, 4168 |
| BsmI | GAATGC | 3 cut(s) | 748, 1069, 1552 |
| BsnI | GGCC | 8 cut(s) | 814, 1325, 1800, 1861, 2039, 3180, 3638, 3833 |
| Bso31I | GGTCTC | 1 cut(s) | 3675 |
| BsoBI | CYCGRG | 5 cut(s) | 903, 1811, 1936, 2109, 2325 |
| Bsp119I | TTCGAA | 1 cut(s) | 1573 |
| Bsp1286I | GDGCHC | 8 cut(s) | 322, 714, 1477, 2359, 2695, 2736, 3421, 3787 |
| Bsp13I | TCCGGA | 2 cut(s) | 3142, 4108 |
| Bsp1407I | TGTACA | 1 cut(s) | 2566 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 4230 |
| BspANI | GGCC | 8 cut(s) | 814, 1325, 1800, 1861, 2039, 3180, 3638, 3833 |
| BspCNI | CTCAG | 8 cut(s) | 373, 1435, 1798, 2565, 3580, 3757, 3920, 4222 |
| BspEI | TCCGGA | 2 cut(s) | 3142, 4108 |
| BspFNI | CGCG | 3 cut(s) | 2265, 3941, 4192 |
| BspMI | ACCTGC | 1 cut(s) | 730 |
| BspQI | GCTCTTC | 1 cut(s) | 1454 |
| BspT104I | TTCGAA | 1 cut(s) | 1573 |
| BspT107I | GGYRCC | 2 cut(s) | 2925, 4092 |
| BspTI | CTTAAG | 1 cut(s) | 3674 |
| BspTNI | GGTCTC | 1 cut(s) | 3675 |
| BsrBI | CCGCTC | 1 cut(s) | 1108 |
| BsrDI | GCAATG | 3 cut(s) | 3378, 3554, 3930 |
| BsrFI | RCCGGY | 2 cut(s) | 415, 593 |
| BsrGI | TGTACA | 1 cut(s) | 2566 |
| BsrI | ACTGG | 8 cut(s) | 133, 454, 856, 1171, 1723, 1998, 3536, 3613 |
| BssAI | RCCGGY | 2 cut(s) | 415, 593 |
| BssNI | GRCGYC | 3 cut(s) | 1015, 3242, 3428 |
| BssSI | CACGAG | 2 cut(s) | 1492, 2423 |
| BssT1I | CCWWGG | 5 cut(s) | 302, 842, 1465, 2969, 4096 |
| Bst2BI | CACGAG | 2 cut(s) | 1492, 2423 |
| Bst2UI | CCWGG | 7 cut(s) | 623, 782, 2231, 3259, 3509, 3708, 4240 |
| Bst4CI | ACNGT | 9 cut(s) | 245, 734, 935, 1681, 2000, 3010, 3190, 3452, 3661 |
| Bst6I | CTCTTC | 3 cut(s) | 1454, 2123, 3352 |
| BstACI | GRCGYC | 3 cut(s) | 1015, 3242, 3428 |
| BstAFI | CTTAAG | 1 cut(s) | 3674 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 4064 |
| BstAUI | TGTACA | 1 cut(s) | 2566 |
| BstBI | TTCGAA | 1 cut(s) | 1573 |
| BstC8I | GCNNGC | 6 cut(s) | 417, 468, 833, 1392, 2448, 3466 |
| BstEII | GGTNACC | 1 cut(s) | 2474 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1492 |
| BstF5I | GGATG | 4 cut(s) | 988, 2869, 3078, 3151 |
| BstFNI | CGCG | 3 cut(s) | 2265, 3941, 4192 |
| BstH2I | RGCGCY | 2 cut(s) | 616, 872 |
| BstHHI | GCGC | 6 cut(s) | 615, 871, 2267, 2772, 3373, 3941 |
| BstMAI | GTCTC | 5 cut(s) | 1812, 3419, 3545, 3570, 3675 |
| BstMCI | CGRYCG | 2 cut(s) | 594, 815 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 326, 1096, 1105, 2398, 2753, 3218, 4064 |
| BstNI | CCWGG | 7 cut(s) | 623, 782, 2231, 3259, 3509, 3708, 4240 |
| BstNSI | RCATGY | 4 cut(s) | 3440, 3472, 3843, 4022 |
| BstPI | GGTNACC | 1 cut(s) | 2474 |
| BstSFI | CTRYAG | 1 cut(s) | 330 |
| BstSLI | GKGCMC | 2 cut(s) | 3421, 3787 |
| BstUI | CGCG | 3 cut(s) | 2265, 3941, 4192 |
| BstV1I | GCAGC | 7 cut(s) | 1399, 2401, 2455, 3316, 3724, 3727, 4138 |
| BstV2I | GAAGAC | 4 cut(s) | 854, 1193, 1833, 2524 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 34 |
| BstZI | CGGCCG | 1 cut(s) | 812 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1835, 3765 |
| BsuI | GTATCC | 1 cut(s) | 439 |
| BsuRI | GGCC | 8 cut(s) | 814, 1325, 1800, 1861, 2039, 3180, 3638, 3833 |
| BtgZI | GCGATG | 1 cut(s) | 3359 |
| BtrI | CACGTC | 4 cut(s) | 553, 1472, 1761, 2932 |
| BtsCI | GGATG | 4 cut(s) | 988, 2869, 3078, 3151 |
| BtsI | GCAGTG | 2 cut(s) | 444, 882 |
| BtsIMutI | CAGTG | 5 cut(s) | 126, 444, 882, 940, 3666 |
| BveI | ACCTGC | 1 cut(s) | 730 |
| Cac8I | GCNNGC | 6 cut(s) | 417, 468, 833, 1392, 2448, 3466 |
| CfoI | GCGC | 6 cut(s) | 615, 871, 2267, 2772, 3373, 3941 |
| Cfr10I | RCCGGY | 2 cut(s) | 415, 593 |
| CseI | GACGC | 4 cut(s) | 1023, 2271, 3231, 4181 |
| Csp6I | GTAC | 7 cut(s) | 727, 807, 1271, 1794, 2567, 2926, 2988 |
| CspAI | ACCGGT | 1 cut(s) | 593 |
| CviQI | GTAC | 7 cut(s) | 727, 807, 1271, 1794, 2567, 2926, 2988 |
| DraI | TTTAAA | 4 cut(s) | 1248, 1929, 2304, 2892 |
| DraIII | CACNNNGTG | 2 cut(s) | 1497, 3661 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 405, 598 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 405, 598 |
| EaeI | YGGCCR | 2 cut(s) | 812, 1323 |
| EagI | CGGCCG | 1 cut(s) | 812 |
| Eam1104I | CTCTTC | 3 cut(s) | 1454, 2123, 3352 |
| EarI | CTCTTC | 3 cut(s) | 1454, 2123, 3352 |
| EciI | GGCGGA | 2 cut(s) | 161, 287 |
| Ecl136II | GAGCTC | 4 cut(s) | 320, 712, 2357, 2734 |
| EclXI | CGGCCG | 1 cut(s) | 812 |
| Eco130I | CCWWGG | 5 cut(s) | 302, 842, 1465, 2969, 4096 |
| Eco147I | AGGCCT | 1 cut(s) | 1800 |
| Eco24I | GRGCYC | 4 cut(s) | 322, 714, 2359, 2736 |
| Eco31I | GGTCTC | 1 cut(s) | 3675 |
| Eco47III | AGCGCT | 1 cut(s) | 614 |
| Eco52I | CGGCCG | 1 cut(s) | 812 |
| Eco53kI | GAGCTC | 4 cut(s) | 320, 712, 2357, 2734 |
| Eco57I | CTGAAG | 2 cut(s) | 299, 2600 |
| Eco81I | CCTNAGG | 2 cut(s) | 1835, 3765 |
| Eco88I | CYCGRG | 5 cut(s) | 903, 1811, 1936, 2109, 2325 |
| Eco91I | GGTNACC | 1 cut(s) | 2474 |
| EcoICRI | GAGCTC | 4 cut(s) | 320, 712, 2357, 2734 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1492 |
| EcoO109I | RGGNCCY | 3 cut(s) | 355, 3028, 4102 |
| EcoO65I | GGTNACC | 1 cut(s) | 2474 |
| EcoRI | GAATTC | 2 cut(s) | 2919, 3262 |
| EcoRII | CCWGG | 7 cut(s) | 621, 780, 2229, 3257, 3507, 3706, 4238 |
| EcoT14I | CCWWGG | 5 cut(s) | 302, 842, 1465, 2969, 4096 |
| EcoT22I | ATGCAT | 1 cut(s) | 3438 |
| EcoT38I | GRGCYC | 4 cut(s) | 322, 714, 2359, 2736 |
| ErhI | CCWWGG | 5 cut(s) | 302, 842, 1465, 2969, 4096 |
| Esp3I | CGTCTC | 1 cut(s) | 3419 |
| FaqI | GGGAC | 6 cut(s) | 1249, 1470, 1778, 2915, 4115, 4168 |
| FauI | CCCGC | 3 cut(s) | 230, 880, 2547 |
| FauNDI | CATATG | 1 cut(s) | 2055 |
| FbaI | TGATCA | 2 cut(s) | 2374, 3148 |
| FblI | GTMKAC | 2 cut(s) | 602, 3245 |
| Fnu4HI | GCNGC | 8 cut(s) | 235, 1388, 2390, 2444, 3305, 3738, 3741, 4152 |
| FokI | GGATG | 4 cut(s) | 995, 2876, 3085, 3158 |
| FriOI | GRGCYC | 4 cut(s) | 322, 714, 2359, 2736 |
| Fsp4HI | GCNGC | 8 cut(s) | 235, 1388, 2390, 2444, 3305, 3738, 3741, 4152 |
| GlaI | GCGC | 6 cut(s) | 614, 870, 2266, 2771, 3372, 3940 |
| GluI | GCNGC | 8 cut(s) | 235, 1388, 2390, 2444, 3305, 3738, 3741, 4152 |
| GsaI | CCCAGC | 2 cut(s) | 1608, 3851 |
| GsuI | CTGGAG | 3 cut(s) | 644, 764, 3593 |
| HaeII | RGCGCY | 2 cut(s) | 616, 872 |
| HaeIII | GGCC | 8 cut(s) | 814, 1325, 1800, 1861, 2039, 3180, 3638, 3833 |
| HgaI | GACGC | 4 cut(s) | 1023, 2271, 3231, 4181 |
| HhaI | GCGC | 6 cut(s) | 615, 871, 2267, 2772, 3373, 3941 |
| Hin1I | GRCGYC | 3 cut(s) | 1015, 3242, 3428 |
| Hin6I | GCGC | 6 cut(s) | 613, 869, 2265, 2770, 3371, 3939 |
| HinP1I | GCGC | 6 cut(s) | 613, 869, 2265, 2770, 3371, 3939 |
| HincII | GTYRAC | 3 cut(s) | 603, 894, 3246 |
| HindII | GTYRAC | 3 cut(s) | 603, 894, 3246 |
| HindIII | AAGCTT | 3 cut(s) | 19, 3677, 3797 |
| HpaI | GTTAAC | 1 cut(s) | 894 |
| HphI | GGTGA | 9 cut(s) | 76, 1041, 1126, 1162, 1693, 2137, 2486, 2651, 3901 |
| Hpy99I | CGWCG | 7 cut(s) | 166, 604, 734, 1017, 2265, 2936, 3247 |
| HpyCH4III | ACNGT | 9 cut(s) | 245, 734, 935, 1681, 2000, 3010, 3190, 3452, 3661 |
| HpyCH4IV | ACGT | 7 cut(s) | 552, 1348, 1471, 1760, 2931, 3428, 3948 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 326, 1096, 1105, 2398, 2753, 3218, 4064 |
| HpySE526I | ACGT | 7 cut(s) | 552, 1348, 1471, 1760, 2931, 3428, 3948 |
| Hsp92I | GRCGYC | 3 cut(s) | 1015, 3242, 3428 |
| HspAI | GCGC | 6 cut(s) | 613, 869, 2265, 2770, 3371, 3939 |
| KflI | GGGWCCC | 1 cut(s) | 4102 |
| Kpn2I | TCCGGA | 2 cut(s) | 3142, 4108 |
| KpnI | GGTACC | 1 cut(s) | 2929 |
| KroI | GCCGGC | 1 cut(s) | 415 |
| KroNI | GCCGGC | 1 cut(s) | 417 |
| Ksp22I | TGATCA | 2 cut(s) | 2374, 3148 |
| KspAI | GTTAAC | 1 cut(s) | 894 |
| LguI | GCTCTTC | 1 cut(s) | 1454 |
| Lsp1109I | GCAGC | 7 cut(s) | 1399, 2401, 2455, 3316, 3724, 3727, 4138 |
| LweI | GCATC | 5 cut(s) | 57, 1573, 2158, 2854, 3382 |
| MaeII | ACGT | 7 cut(s) | 552, 1348, 1471, 1760, 2931, 3428, 3948 |
| MaeIII | GTNAC | 9 cut(s) | 337, 1806, 2047, 2474, 2639, 2797, 3333, 3899, 3992 |
| MbiI | CCGCTC | 1 cut(s) | 1108 |
| MhlI | GDGCHC | 8 cut(s) | 322, 714, 1477, 2359, 2695, 2736, 3421, 3787 |
| MlsI | TGGCCA | 1 cut(s) | 1325 |
| MluNI | TGGCCA | 1 cut(s) | 1325 |
| MlyI | GAGTC | 8 cut(s) | 217, 393, 2044, 2251, 2317, 2636, 2783, 3338 |
| MmeI | TCCRAC | 7 cut(s) | 191, 421, 800, 836, 1074, 2348, 4065 |
| Mox20I | TGGCCA | 1 cut(s) | 1325 |
| Mph1103I | ATGCAT | 1 cut(s) | 3438 |
| MroI | TCCGGA | 2 cut(s) | 3142, 4108 |
| MroNI | GCCGGC | 1 cut(s) | 415 |
| MroXI | GAANNNNTTC | 1 cut(s) | 636 |
| MscI | TGGCCA | 1 cut(s) | 1325 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2183, 2606 |
| Msp20I | TGGCCA | 1 cut(s) | 1325 |
| MspA1I | CMGCKG | 3 cut(s) | 2214, 2572, 3571 |
| MspCI | CTTAAG | 1 cut(s) | 3674 |
| Mva1269I | GAATGC | 3 cut(s) | 748, 1069, 1552 |
| MvaI | CCWGG | 7 cut(s) | 623, 782, 2231, 3259, 3509, 3708, 4240 |
| MvnI | CGCG | 3 cut(s) | 2265, 3941, 4192 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 326, 1096, 1105, 2398, 2753, 3218, 4064 |
| NaeI | GCCGGC | 1 cut(s) | 417 |
| NciI | CCSGG | 3 cut(s) | 404, 816, 1112 |
| NdeI | CATATG | 1 cut(s) | 2055 |
| NgoMIV | GCCGGC | 1 cut(s) | 415 |
| NmeAIII | GCCGAG | 3 cut(s) | 2338, 3853, 3859 |
| NmuCI | GTSAC | 4 cut(s) | 2047, 2474, 2639, 3899 |
| NsiI | ATGCAT | 1 cut(s) | 3438 |
| NspI | RCATGY | 4 cut(s) | 3440, 3472, 3843, 4022 |
| NspV | TTCGAA | 1 cut(s) | 1573 |
| PceI | AGGCCT | 1 cut(s) | 1800 |
| PciSI | GCTCTTC | 1 cut(s) | 1454 |
| PctI | GAATGC | 3 cut(s) | 748, 1069, 1552 |
| PdiI | GCCGGC | 1 cut(s) | 417 |
| PdmI | GAANNNNTTC | 1 cut(s) | 636 |
| PfeI | GAWTC | 5 cut(s) | 1055, 1480, 1570, 3139, 3943 |
| Pfl23II | CGTACG | 1 cut(s) | 726 |
| PfoI | TCCNGGA | 2 cut(s) | 621, 3706 |
| PinAI | ACCGGT | 1 cut(s) | 593 |
| PkrI | GCNGC | 8 cut(s) | 236, 1389, 2391, 2445, 3306, 3739, 3742, 4153 |
| PleI | GAGTC | 8 cut(s) | 216, 393, 2044, 2251, 2317, 2636, 2783, 3338 |
| PpsI | GAGTC | 8 cut(s) | 216, 393, 2044, 2251, 2317, 2636, 2783, 3338 |
| PpuMI | RGGWCCY | 3 cut(s) | 355, 3028, 4102 |
| PshBI | ATTAAT | 1 cut(s) | 4209 |
| Psp124BI | GAGCTC | 4 cut(s) | 322, 714, 2359, 2736 |
| Psp5II | RGGWCCY | 3 cut(s) | 355, 3028, 4102 |
| Psp6I | CCWGG | 7 cut(s) | 621, 780, 2229, 3257, 3507, 3706, 4238 |
| PspEI | GGTNACC | 1 cut(s) | 2474 |
| PspFI | CCCAGC | 2 cut(s) | 1604, 3847 |
| PspGI | CCWGG | 7 cut(s) | 621, 780, 2229, 3257, 3507, 3706, 4238 |
| PspLI | CGTACG | 1 cut(s) | 726 |
| PspPPI | RGGWCCY | 3 cut(s) | 355, 3028, 4102 |
| PvuII | CAGCTG | 2 cut(s) | 2572, 3571 |
| RsaI | GTAC | 7 cut(s) | 728, 808, 1272, 1795, 2568, 2927, 2989 |
| RsaNI | GTAC | 7 cut(s) | 727, 807, 1271, 1794, 2567, 2926, 2988 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2183, 2606 |
| SacI | GAGCTC | 4 cut(s) | 322, 714, 2359, 2736 |
| SalI | GTCGAC | 2 cut(s) | 601, 3244 |
| SapI | GCTCTTC | 1 cut(s) | 1454 |
| SatI | GCNGC | 8 cut(s) | 235, 1388, 2390, 2444, 3305, 3738, 3741, 4152 |
| SchI | GAGTC | 8 cut(s) | 217, 393, 2044, 2251, 2317, 2636, 2783, 3338 |
| SduI | GDGCHC | 8 cut(s) | 322, 714, 1477, 2359, 2695, 2736, 3421, 3787 |
| SfaNI | GCATC | 5 cut(s) | 57, 1573, 2158, 2854, 3382 |
| SfcI | CTRYAG | 1 cut(s) | 330 |
| SfuI | TTCGAA | 1 cut(s) | 1573 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2183, 2606 |
| SmlI | CTYRAG | 4 cut(s) | 2041, 2810, 3338, 3674 |
| SmoI | CTYRAG | 4 cut(s) | 2041, 2810, 3338, 3674 |
| SseBI | AGGCCT | 1 cut(s) | 1800 |
| SspI | AATATT | 1 cut(s) | 3622 |
| SstI | GAGCTC | 4 cut(s) | 322, 714, 2359, 2736 |
| StuI | AGGCCT | 1 cut(s) | 1800 |
| StyI | CCWWGG | 5 cut(s) | 302, 842, 1465, 2969, 4096 |
| TaaI | ACNGT | 9 cut(s) | 245, 734, 935, 1681, 2000, 3010, 3190, 3452, 3661 |
| TaiI | ACGT | 7 cut(s) | 555, 1351, 1474, 1763, 2934, 3431, 3951 |
| TatI | WGTACW | 4 cut(s) | 806, 1270, 2566, 2987 |
| TauI | GCSGC | 1 cut(s) | 237 |
| TfiI | GAWTC | 5 cut(s) | 1055, 1480, 1570, 3139, 3943 |
| TscAI | CASTG | 5 cut(s) | 133, 444, 889, 940, 3666 |
| TseFI | GTSAC | 4 cut(s) | 2047, 2474, 2639, 3899 |
| TseI | GCWGC | 7 cut(s) | 1387, 2389, 2443, 3304, 3737, 3740, 4151 |
| Tsp45I | GTSAC | 4 cut(s) | 2047, 2474, 2639, 3899 |
| TspGWI | ACGGA | 3 cut(s) | 692, 2483, 2536 |
| TspRI | CASTG | 5 cut(s) | 133, 444, 889, 940, 3666 |
| Vha464I | CTTAAG | 1 cut(s) | 3674 |
| VspI | ATTAAT | 1 cut(s) | 4209 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1492 |
| XapI | RAATTY | 5 cut(s) | 699, 920, 2919, 3262, 3712 |
| XbaI | TCTAGA | 5 cut(s) | 1255, 1903, 2066, 2785, 3682 |
| XceI | RCATGY | 4 cut(s) | 3440, 3472, 3843, 4022 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2936 |
| XmaJI | CCTAGG | 1 cut(s) | 4096 |
| XmiI | GTMKAC | 2 cut(s) | 602, 3245 |
| XmnI | GAANNNNTTC | 1 cut(s) | 636 |
| ZraI | GACGTC | 1 cut(s) | 3429 |
| Zsp2I | ATGCAT | 1 cut(s) | 3438 |