Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 405 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 971 |
| AciI | CCGC | 1 cut(s) | 935 |
| AclWI | GGATC | 3 cut(s) | 273, 465, 661 |
| AcsI | RAATTY | 2 cut(s) | 174, 543 |
| AfaI | GTAC | 3 cut(s) | 98, 259, 426 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 280, 766, 971 |
| AflIII | ACRYGT | 2 cut(s) | 161, 1022 |
| AgeI | ACCGGT | 1 cut(s) | 1105 |
| AgsI | TTSAA | 6 cut(s) | 159, 190, 982, 1006, 1112, 1118 |
| AjnI | CCWGG | 3 cut(s) | 30, 502, 870 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 520, 552 |
| AluBI | AGCT | 6 cut(s) | 104, 413, 421, 710, 961, 1139 |
| AluI | AGCT | 6 cut(s) | 104, 413, 421, 710, 961, 1139 |
| Alw26I | GTCTC | 3 cut(s) | 562, 1016, 1041 |
| AlwI | GGATC | 3 cut(s) | 273, 465, 661 |
| Ama87I | CYCGRG | 1 cut(s) | 1015 |
| AoxI | GGCC | 1 cut(s) | 183 |
| ApeKI | GCWGC | 3 cut(s) | 218, 1127, 1136 |
| ApoI | RAATTY | 2 cut(s) | 174, 543 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 634, 666 |
| AsiGI | ACCGGT | 1 cut(s) | 1105 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 231, 243 |
| AsuHPI | GGTGA | 6 cut(s) | 379, 454, 782, 1054, 1070, 1095 |
| AvaI | CYCGRG | 1 cut(s) | 1015 |
| BbvI | GCAGC | 3 cut(s) | 205, 1114, 1148 |
| BccI | CCATC | 3 cut(s) | 587, 973, 989 |
| BciT130I | CCWGG | 3 cut(s) | 32, 504, 872 |
| BcoDI | GTCTC | 3 cut(s) | 562, 1016, 1041 |
| BfaI | CTAG | 4 cut(s) | 422, 707, 761, 1131 |
| BisI | GCNGC | 3 cut(s) | 219, 1128, 1137 |
| BlsI | GCNGC | 3 cut(s) | 220, 1129, 1138 |
| Bme1390I | CCNGG | 3 cut(s) | 32, 504, 872 |
| BmeT110I | CYCGRG | 1 cut(s) | 1015 |
| BmiI | GGNNCC | 2 cut(s) | 501, 951 |
| BmrFI | CCNGG | 3 cut(s) | 32, 504, 872 |
| BmsI | GCATC | 2 cut(s) | 124, 712 |
| Bpu10I | CCTNAGC | 1 cut(s) | 495 |
| BsaAI | YACGTR | 1 cut(s) | 68 |
| BsaBI | GATNNNNATC | 1 cut(s) | 671 |
| BsaI | GGTCTC | 1 cut(s) | 1016 |
| BsaJI | CCNNGG | 2 cut(s) | 953, 1122 |
| BsaWI | WCCGGW | 2 cut(s) | 946, 1105 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 136, 166 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 280, 766, 971 |
| Bse118I | RCCGGY | 1 cut(s) | 1105 |
| Bse8I | GATNNNNATC | 1 cut(s) | 671 |
| BseBI | CCWGG | 3 cut(s) | 32, 504, 872 |
| BseDI | CCNNGG | 2 cut(s) | 953, 1122 |
| BseGI | GGATG | 3 cut(s) | 139, 146, 304 |
| BseJI | GATNNNNATC | 1 cut(s) | 671 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 280, 766, 971 |
| BseMII | CTCAG | 2 cut(s) | 129, 299 |
| BseXI | GCAGC | 3 cut(s) | 205, 1114, 1148 |
| BsgI | GTGCAG | 1 cut(s) | 680 |
| BshFI | GGCC | 1 cut(s) | 185 |
| BshTI | ACCGGT | 1 cut(s) | 1105 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1015 |
| BsiSI | CCGG | 2 cut(s) | 947, 1106 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 280, 766, 971 |
| BsmAI | GTCTC | 3 cut(s) | 562, 1016, 1041 |
| BsmBI | CGTCTC | 1 cut(s) | 562 |
| BsmI | GAATGC | 1 cut(s) | 866 |
| BsnI | GGCC | 1 cut(s) | 185 |
| Bso31I | GGTCTC | 1 cut(s) | 1016 |
| BsoBI | CYCGRG | 1 cut(s) | 1015 |
| Bsp1407I | TGTACA | 1 cut(s) | 96 |
| Bsp143I | GATC | 6 cut(s) | 265, 292, 457, 666, 672, 804 |
| BspACI | CCGC | 1 cut(s) | 935 |
| BspANI | GGCC | 1 cut(s) | 185 |
| BspCNI | CTCAG | 2 cut(s) | 130, 298 |
| BspHI | TCATGA | 2 cut(s) | 235, 268 |
| BspLI | GGNNCC | 2 cut(s) | 501, 951 |
| BspPI | GGATC | 3 cut(s) | 273, 465, 661 |
| BspTNI | GGTCTC | 1 cut(s) | 1016 |
| BsrFI | RCCGGY | 1 cut(s) | 1105 |
| BsrGI | TGTACA | 1 cut(s) | 96 |
| BssAI | RCCGGY | 1 cut(s) | 1105 |
| BssECI | CCNNGG | 2 cut(s) | 953, 1122 |
| BssMI | GATC | 6 cut(s) | 265, 292, 457, 666, 672, 804 |
| BssT1I | CCWWGG | 1 cut(s) | 1122 |
| Bst2UI | CCWGG | 3 cut(s) | 32, 504, 872 |
| Bst4CI | ACNGT | 1 cut(s) | 556 |
| Bst6I | CTCTTC | 1 cut(s) | 794 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1142 |
| BstAUI | TGTACA | 1 cut(s) | 96 |
| BstBAI | YACGTR | 1 cut(s) | 68 |
| BstC8I | GCNNGC | 3 cut(s) | 21, 91, 854 |
| BstDEI | CTNAG | 4 cut(s) | 105, 138, 285, 495 |
| BstDSI | CCRYGG | 1 cut(s) | 953 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 764 |
| BstF5I | GGATG | 3 cut(s) | 139, 146, 304 |
| BstKTI | GATC | 6 cut(s) | 268, 295, 460, 669, 675, 807 |
| BstMAI | GTCTC | 3 cut(s) | 562, 1016, 1041 |
| BstMBI | GATC | 6 cut(s) | 265, 292, 457, 666, 672, 804 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 872, 1127, 1133, 1136, 1142 |
| BstNI | CCWGG | 3 cut(s) | 32, 504, 872 |
| BstNSI | RCATGY | 7 cut(s) | 23, 165, 638, 750, 856, 1026, 1088 |
| BstSCI | CCNGG | 3 cut(s) | 30, 502, 870 |
| BstSNI | TACGTA | 1 cut(s) | 68 |
| BstV1I | GCAGC | 3 cut(s) | 205, 1114, 1148 |
| BstX2I | RGATCY | 1 cut(s) | 457 |
| BstYI | RGATCY | 1 cut(s) | 457 |
| BsuRI | GGCC | 1 cut(s) | 185 |
| BtgI | CCRYGG | 1 cut(s) | 953 |
| BtsCI | GGATG | 3 cut(s) | 139, 146, 304 |
| Cac8I | GCNNGC | 3 cut(s) | 21, 91, 854 |
| CciI | TCATGA | 2 cut(s) | 235, 268 |
| Cfr10I | RCCGGY | 1 cut(s) | 1105 |
| CseI | GACGC | 1 cut(s) | 311 |
| CsiI | ACCWGGT | 1 cut(s) | 30 |
| Csp6I | GTAC | 3 cut(s) | 97, 258, 425 |
| CspAI | ACCGGT | 1 cut(s) | 1105 |
| CviQI | GTAC | 3 cut(s) | 97, 258, 425 |
| DdeI | CTNAG | 4 cut(s) | 105, 138, 285, 495 |
| DpnI | GATC | 6 cut(s) | 267, 294, 459, 668, 674, 806 |
| DpnII | GATC | 6 cut(s) | 265, 292, 457, 666, 672, 804 |
| Eam1104I | CTCTTC | 1 cut(s) | 794 |
| EarI | CTCTTC | 1 cut(s) | 794 |
| Eco105I | TACGTA | 1 cut(s) | 68 |
| Eco130I | CCWWGG | 1 cut(s) | 1122 |
| Eco147I | AGGCCT | 1 cut(s) | 185 |
| Eco31I | GGTCTC | 1 cut(s) | 1016 |
| Eco88I | CYCGRG | 1 cut(s) | 1015 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 764 |
| EcoRI | GAATTC | 1 cut(s) | 543 |
| EcoRII | CCWGG | 3 cut(s) | 30, 502, 870 |
| EcoT14I | CCWWGG | 1 cut(s) | 1122 |
| EcoT22I | ATGCAT | 1 cut(s) | 1086 |
| ErhI | CCWWGG | 1 cut(s) | 1122 |
| Esp3I | CGTCTC | 1 cut(s) | 562 |
| FauI | CCCGC | 1 cut(s) | 928 |
| Fnu4HI | GCNGC | 3 cut(s) | 219, 1128, 1137 |
| FokI | GGATG | 3 cut(s) | 133, 146, 311 |
| Fsp4HI | GCNGC | 3 cut(s) | 219, 1128, 1137 |
| FspBI | CTAG | 4 cut(s) | 422, 707, 761, 1131 |
| GluI | GCNGC | 3 cut(s) | 219, 1128, 1137 |
| HaeIII | GGCC | 1 cut(s) | 185 |
| HapII | CCGG | 2 cut(s) | 947, 1106 |
| HgaI | GACGC | 1 cut(s) | 311 |
| HincII | GTYRAC | 2 cut(s) | 144, 910 |
| HindII | GTYRAC | 2 cut(s) | 144, 910 |
| HinfI | GANTC | 2 cut(s) | 431, 623 |
| HpaI | GTTAAC | 1 cut(s) | 910 |
| HpaII | CCGG | 2 cut(s) | 947, 1106 |
| HphI | GGTGA | 6 cut(s) | 379, 454, 782, 1054, 1070, 1095 |
| Hpy166II | GTNNAC | 4 cut(s) | 71, 144, 387, 910 |
| Hpy188I | TCNGA | 2 cut(s) | 457, 754 |
| Hpy8I | GTNNAC | 4 cut(s) | 71, 144, 387, 910 |
| HpyAV | CCTTC | 5 cut(s) | 165, 184, 195, 523, 829 |
| HpyCH4III | ACNGT | 1 cut(s) | 556 |
| HpyCH4IV | ACGT | 1 cut(s) | 67 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 872, 1127, 1133, 1136, 1142 |
| HpyF3I | CTNAG | 4 cut(s) | 105, 138, 285, 495 |
| HpySE526I | ACGT | 1 cut(s) | 67 |
| KspAI | GTTAAC | 1 cut(s) | 910 |
| Kzo9I | GATC | 6 cut(s) | 265, 292, 457, 666, 672, 804 |
| LmnI | GCTCC | 1 cut(s) | 226 |
| Lsp1109I | GCAGC | 3 cut(s) | 205, 1114, 1148 |
| LweI | GCATC | 2 cut(s) | 124, 712 |
| MabI | ACCWGGT | 1 cut(s) | 30 |
| MaeI | CTAG | 4 cut(s) | 422, 707, 761, 1131 |
| MaeII | ACGT | 1 cut(s) | 67 |
| MaeIII | GTNAC | 2 cut(s) | 916, 1058 |
| MalI | GATC | 6 cut(s) | 267, 294, 459, 668, 674, 806 |
| MboI | GATC | 6 cut(s) | 265, 292, 457, 666, 672, 804 |
| MboII | GAAGA | 5 cut(s) | 239, 490, 781, 918, 1092 |
| MflI | RGATCY | 1 cut(s) | 457 |
| MluCI | AATT | 8 cut(s) | 174, 327, 407, 543, 861, 883, 1113, 1157 |
| MlyI | GAGTC | 1 cut(s) | 632 |
| MmeI | TCCRAC | 3 cut(s) | 146, 922, 1048 |
| MnlI | CCTC | 9 cut(s) | 51, 160, 164, 175, 262, 375, 819, 924, 1064 |
| Mph1103I | ATGCAT | 1 cut(s) | 1086 |
| MroXI | GAANNNNTTC | 2 cut(s) | 231, 243 |
| MseI | TTAA | 3 cut(s) | 375, 513, 909 |
| MslI | CAYNNNNRTG | 1 cut(s) | 369 |
| MspI | CCGG | 2 cut(s) | 947, 1106 |
| MspR9I | CCNGG | 3 cut(s) | 32, 504, 872 |
| Mva1269I | GAATGC | 1 cut(s) | 866 |
| MvaI | CCWGG | 3 cut(s) | 32, 504, 872 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 872, 1127, 1133, 1136, 1142 |
| NdeII | GATC | 6 cut(s) | 265, 292, 457, 666, 672, 804 |
| NlaIV | GGNNCC | 2 cut(s) | 501, 951 |
| NmuCI | GTSAC | 2 cut(s) | 916, 1058 |
| NsiI | ATGCAT | 1 cut(s) | 1086 |
| NspI | RCATGY | 7 cut(s) | 23, 165, 638, 750, 856, 1026, 1088 |
| PaeI | GCATGC | 2 cut(s) | 23, 856 |
| PaeR7I | CTCGAG | 1 cut(s) | 1015 |
| PagI | TCATGA | 2 cut(s) | 235, 268 |
| PceI | AGGCCT | 1 cut(s) | 185 |
| PciI | ACATGT | 2 cut(s) | 161, 1022 |
| PctI | GAATGC | 1 cut(s) | 866 |
| PdmI | GAANNNNTTC | 2 cut(s) | 231, 243 |
| PfeI | GAWTC | 1 cut(s) | 431 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 971 |
| PinAI | ACCGGT | 1 cut(s) | 1105 |
| PkrI | GCNGC | 3 cut(s) | 220, 1129, 1138 |
| PleI | GAGTC | 1 cut(s) | 631 |
| PpsI | GAGTC | 1 cut(s) | 631 |
| Ppu21I | YACGTR | 1 cut(s) | 68 |
| PscI | ACATGT | 2 cut(s) | 161, 1022 |
| PsiI | TTATAA | 1 cut(s) | 405 |
| Psp6I | CCWGG | 3 cut(s) | 30, 502, 870 |
| PspGI | CCWGG | 3 cut(s) | 30, 502, 870 |
| PspN4I | GGNNCC | 2 cut(s) | 501, 951 |
| PsuI | RGATCY | 1 cut(s) | 457 |
| RsaI | GTAC | 3 cut(s) | 98, 259, 426 |
| RsaNI | GTAC | 3 cut(s) | 97, 258, 425 |
| RseI | CAYNNNNRTG | 1 cut(s) | 369 |
| SaqAI | TTAA | 3 cut(s) | 375, 513, 909 |
| SatI | GCNGC | 3 cut(s) | 219, 1128, 1137 |
| Sau3AI | GATC | 6 cut(s) | 265, 292, 457, 666, 672, 804 |
| SchI | GAGTC | 1 cut(s) | 632 |
| ScrFI | CCNGG | 3 cut(s) | 32, 504, 872 |
| SexAI | ACCWGGT | 1 cut(s) | 30 |
| SfaNI | GCATC | 2 cut(s) | 124, 712 |
| Sfr274I | CTCGAG | 1 cut(s) | 1015 |
| SlaI | CTCGAG | 1 cut(s) | 1015 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 369 |
| SmlI | CTYRAG | 1 cut(s) | 1015 |
| SmoI | CTYRAG | 1 cut(s) | 1015 |
| SnaBI | TACGTA | 1 cut(s) | 68 |
| SphI | GCATGC | 2 cut(s) | 23, 856 |
| Sse9I | AATT | 8 cut(s) | 174, 327, 407, 543, 861, 883, 1113, 1157 |
| SseBI | AGGCCT | 1 cut(s) | 185 |
| SsiI | CCGC | 1 cut(s) | 935 |
| SspI | AATATT | 1 cut(s) | 718 |
| SspMI | CTAG | 4 cut(s) | 422, 707, 761, 1131 |
| StuI | AGGCCT | 1 cut(s) | 185 |
| StyD4I | CCNGG | 3 cut(s) | 30, 502, 870 |
| StyI | CCWWGG | 1 cut(s) | 1122 |
| TaaI | ACNGT | 1 cut(s) | 556 |
| TaiI | ACGT | 1 cut(s) | 70 |
| TaqI | TCGA | 3 cut(s) | 665, 929, 1016 |
| TaqII | GACCGA | 1 cut(s) | 904 |
| TasI | AATT | 8 cut(s) | 174, 327, 407, 543, 861, 883, 1113, 1157 |
| TatI | WGTACW | 2 cut(s) | 96, 424 |
| TfiI | GAWTC | 1 cut(s) | 431 |
| Tru1I | TTAA | 3 cut(s) | 375, 513, 909 |
| Tru9I | TTAA | 3 cut(s) | 375, 513, 909 |
| TseFI | GTSAC | 2 cut(s) | 916, 1058 |
| TseI | GCWGC | 3 cut(s) | 218, 1127, 1136 |
| Tsp45I | GTSAC | 2 cut(s) | 916, 1058 |
| TspDTI | ATGAA | 3 cut(s) | 224, 252, 912 |
| TspGWI | ACGGA | 1 cut(s) | 942 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 971 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 764 |
| XapI | RAATTY | 2 cut(s) | 174, 543 |
| XceI | RCATGY | 7 cut(s) | 23, 165, 638, 750, 856, 1026, 1088 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 972 |
| XhoI | CTCGAG | 1 cut(s) | 1015 |
| XmnI | GAANNNNTTC | 2 cut(s) | 231, 243 |
| XspI | CTAG | 4 cut(s) | 422, 707, 761, 1131 |
| Zsp2I | ATGCAT | 1 cut(s) | 1086 |