ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 519 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 619 |
| AccI | GTMKAC | 1 cut(s) | 140 |
| AciI | CCGC | 2 cut(s) | 22, 545 |
| AclWI | GGATC | 1 cut(s) | 13 |
| AcoI | YGGCCR | 1 cut(s) | 744 |
| AcsI | RAATTY | 2 cut(s) | 352, 399 |
| AcuI | CTGAAG | 1 cut(s) | 84 |
| AfaI | GTAC | 2 cut(s) | 391, 785 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 101, 619 |
| AflIII | ACRYGT | 1 cut(s) | 482 |
| AgsI | TTSAA | 2 cut(s) | 101, 421 |
| AhlI | ACTAGT | 1 cut(s) | 593 |
| AjnI | CCWGG | 3 cut(s) | 69, 385, 568 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 152, 184 |
| AluBI | AGCT | 2 cut(s) | 120, 277 |
| AluI | AGCT | 2 cut(s) | 120, 277 |
| Alw21I | GWGCWC | 1 cut(s) | 279 |
| AlwI | GGATC | 1 cut(s) | 13 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 569 |
| AoxI | GGCC | 1 cut(s) | 744 |
| ApeKI | GCWGC | 2 cut(s) | 74, 560 |
| ApoI | RAATTY | 2 cut(s) | 352, 399 |
| AseI | ATTAAT | 1 cut(s) | 449 |
| AspLEI | GCGC | 1 cut(s) | 35 |
| AsuHPI | GGTGA | 2 cut(s) | 203, 785 |
| BalI | TGGCCA | 1 cut(s) | 746 |
| BanII | GRGCYC | 1 cut(s) | 279 |
| BbsI | GAAGAC | 2 cut(s) | 422, 645 |
| Bbv12I | GWGCWC | 1 cut(s) | 279 |
| BbvI | GCAGC | 2 cut(s) | 61, 572 |
| BciT130I | CCWGG | 3 cut(s) | 71, 387, 570 |
| BcuI | ACTAGT | 1 cut(s) | 593 |
| BfaI | CTAG | 3 cut(s) | 144, 594, 809 |
| BfoI | RGCGCY | 1 cut(s) | 36 |
| BfuAI | ACCTGC | 1 cut(s) | 519 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 30 |
| BisI | GCNGC | 2 cut(s) | 75, 561 |
| BlsI | GCNGC | 2 cut(s) | 76, 562 |
| Bme1390I | CCNGG | 3 cut(s) | 71, 387, 570 |
| BmiI | GGNNCC | 1 cut(s) | 465 |
| BmrFI | CCNGG | 3 cut(s) | 71, 387, 570 |
| BmsI | GCATC | 1 cut(s) | 747 |
| BpiI | GAAGAC | 2 cut(s) | 422, 645 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 266, 298 |
| BpuEI | CTTGAG | 1 cut(s) | 136 |
| BsaJI | CCNNGG | 1 cut(s) | 69 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 158, 188 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 101, 619 |
| Bse118I | RCCGGY | 1 cut(s) | 300 |
| Bse3DI | GCAATG | 1 cut(s) | 161 |
| BseBI | CCWGG | 3 cut(s) | 71, 387, 570 |
| BseDI | CCNNGG | 1 cut(s) | 69 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 101, 619 |
| BseMI | GCAATG | 1 cut(s) | 161 |
| BseMII | CTCAG | 2 cut(s) | 318, 507 |
| BseRI | GAGGAG | 1 cut(s) | 179 |
| BseXI | GCAGC | 2 cut(s) | 61, 572 |
| BshFI | GGCC | 1 cut(s) | 746 |
| BsiHKAI | GWGCWC | 1 cut(s) | 279 |
| BsiSI | CCGG | 1 cut(s) | 301 |
| BslFI | GGGAC | 1 cut(s) | 125 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 101, 619 |
| BsmFI | GGGAC | 1 cut(s) | 125 |
| BsmI | GAATGC | 1 cut(s) | 715 |
| BsnI | GGCC | 1 cut(s) | 746 |
| Bsp1286I | GDGCHC | 1 cut(s) | 279 |
| Bsp143I | GATC | 3 cut(s) | 5, 244, 811 |
| BspACI | CCGC | 2 cut(s) | 22, 545 |
| BspANI | GGCC | 1 cut(s) | 746 |
| BspCNI | CTCAG | 2 cut(s) | 319, 508 |
| BspLI | GGNNCC | 1 cut(s) | 465 |
| BspMI | ACCTGC | 1 cut(s) | 519 |
| BspPI | GGATC | 1 cut(s) | 13 |
| BspQI | GCTCTTC | 1 cut(s) | 284 |
| BsrDI | GCAATG | 1 cut(s) | 161 |
| BsrFI | RCCGGY | 1 cut(s) | 300 |
| BssAI | RCCGGY | 1 cut(s) | 300 |
| BssECI | CCNNGG | 1 cut(s) | 69 |
| BssMI | GATC | 3 cut(s) | 5, 244, 811 |
| Bst2UI | CCWGG | 3 cut(s) | 71, 387, 570 |
| Bst4CI | ACNGT | 4 cut(s) | 44, 439, 609, 739 |
| Bst6I | CTCTTC | 1 cut(s) | 284 |
| BstC8I | GCNNGC | 1 cut(s) | 122 |
| BstDEI | CTNAG | 3 cut(s) | 270, 327, 516 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 99 |
| BstH2I | RGCGCY | 1 cut(s) | 36 |
| BstHHI | GCGC | 1 cut(s) | 35 |
| BstKTI | GATC | 3 cut(s) | 8, 247, 814 |
| BstMBI | GATC | 3 cut(s) | 5, 244, 811 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 30, 74, 551, 560 |
| BstNI | CCWGG | 3 cut(s) | 71, 387, 570 |
| BstNSI | RCATGY | 2 cut(s) | 128, 486 |
| BstSCI | CCNGG | 3 cut(s) | 69, 385, 568 |
| BstV1I | GCAGC | 2 cut(s) | 61, 572 |
| BstV2I | GAAGAC | 2 cut(s) | 422, 645 |
| BsuRI | GGCC | 1 cut(s) | 746 |
| BtsI | GCAGTG | 1 cut(s) | 570 |
| BtsIMutI | CAGTG | 1 cut(s) | 570 |
| BveI | ACCTGC | 1 cut(s) | 519 |
| Cac8I | GCNNGC | 1 cut(s) | 122 |
| CaiI | CAGNNNCTG | 1 cut(s) | 569 |
| CfoI | GCGC | 1 cut(s) | 35 |
| Cfr10I | RCCGGY | 1 cut(s) | 300 |
| CsiI | ACCWGGT | 1 cut(s) | 385 |
| Csp6I | GTAC | 2 cut(s) | 390, 784 |
| CviAII | CATG | 4 cut(s) | 125, 188, 357, 483 |
| CviQI | GTAC | 2 cut(s) | 390, 784 |
| DdeI | CTNAG | 3 cut(s) | 270, 327, 516 |
| DpnI | GATC | 3 cut(s) | 7, 246, 813 |
| DpnII | GATC | 3 cut(s) | 5, 244, 811 |
| EaeI | YGGCCR | 1 cut(s) | 744 |
| Eam1104I | CTCTTC | 1 cut(s) | 284 |
| EarI | CTCTTC | 1 cut(s) | 284 |
| EciI | GGCGGA | 1 cut(s) | 11 |
| Ecl136II | GAGCTC | 1 cut(s) | 277 |
| Eco24I | GRGCYC | 1 cut(s) | 279 |
| Eco53kI | GAGCTC | 1 cut(s) | 277 |
| Eco57I | CTGAAG | 1 cut(s) | 84 |
| EcoICRI | GAGCTC | 1 cut(s) | 277 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 99 |
| EcoRII | CCWGG | 3 cut(s) | 69, 385, 568 |
| EcoT38I | GRGCYC | 1 cut(s) | 279 |
| FaeI | CATG | 4 cut(s) | 128, 191, 360, 486 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 263, 295 |
| FaqI | GGGAC | 1 cut(s) | 125 |
| FatI | CATG | 4 cut(s) | 124, 187, 356, 482 |
| FblI | GTMKAC | 1 cut(s) | 140 |
| Fnu4HI | GCNGC | 2 cut(s) | 75, 561 |
| FriOI | GRGCYC | 1 cut(s) | 279 |
| Fsp4HI | GCNGC | 2 cut(s) | 75, 561 |
| FspBI | CTAG | 3 cut(s) | 144, 594, 809 |
| GlaI | GCGC | 1 cut(s) | 34 |
| GluI | GCNGC | 2 cut(s) | 75, 561 |
| HaeII | RGCGCY | 1 cut(s) | 36 |
| HaeIII | GGCC | 1 cut(s) | 746 |
| HapII | CCGG | 1 cut(s) | 301 |
| HhaI | GCGC | 1 cut(s) | 35 |
| Hin1II | CATG | 4 cut(s) | 128, 191, 360, 486 |
| Hin6I | GCGC | 1 cut(s) | 33 |
| HinP1I | GCGC | 1 cut(s) | 33 |
| HincII | GTYRAC | 1 cut(s) | 141 |
| HindII | GTYRAC | 1 cut(s) | 141 |
| HinfI | GANTC | 1 cut(s) | 473 |
| HpaII | CCGG | 1 cut(s) | 301 |
| HphI | GGTGA | 2 cut(s) | 203, 785 |
| Hpy166II | GTNNAC | 2 cut(s) | 141, 488 |
| Hpy188III | TCNNGA | 3 cut(s) | 338, 779, 809 |
| Hpy8I | GTNNAC | 2 cut(s) | 141, 488 |
| Hpy99I | CGWCG | 1 cut(s) | 237 |
| HpyAV | CCTTC | 5 cut(s) | 102, 143, 213, 311, 406 |
| HpyCH4III | ACNGT | 4 cut(s) | 44, 439, 609, 739 |
| HpyCH4IV | ACGT | 1 cut(s) | 790 |
| HpyCH4V | TGCA | 3 cut(s) | 528, 599, 713 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 30, 74, 551, 560 |
| HpyF3I | CTNAG | 3 cut(s) | 270, 327, 516 |
| HpySE526I | ACGT | 1 cut(s) | 790 |
| Hsp92II | CATG | 4 cut(s) | 128, 191, 360, 486 |
| HspAI | GCGC | 1 cut(s) | 33 |
| Kzo9I | GATC | 3 cut(s) | 5, 244, 811 |
| LguI | GCTCTTC | 1 cut(s) | 284 |
| LmnI | GCTCC | 2 cut(s) | 82, 274 |
| Lsp1109I | GCAGC | 2 cut(s) | 61, 572 |
| LweI | GCATC | 1 cut(s) | 747 |
| MabI | ACCWGGT | 1 cut(s) | 385 |
| MaeI | CTAG | 3 cut(s) | 144, 594, 809 |
| MaeII | ACGT | 1 cut(s) | 790 |
| MaeIII | GTNAC | 5 cut(s) | 38, 131, 238, 474, 791 |
| MalI | GATC | 3 cut(s) | 7, 246, 813 |
| MboI | GATC | 3 cut(s) | 5, 244, 811 |
| MboII | GAAGA | 4 cut(s) | 271, 373, 422, 645 |
| MhlI | GDGCHC | 1 cut(s) | 279 |
| MlsI | TGGCCA | 1 cut(s) | 746 |
| MluCI | AATT | 7 cut(s) | 352, 379, 399, 424, 450, 659, 669 |
| MluNI | TGGCCA | 1 cut(s) | 746 |
| MlyI | GAGTC | 1 cut(s) | 482 |
| MmeI | TCCRAC | 2 cut(s) | 230, 458 |
| MnlI | CCTC | 5 cut(s) | 157, 307, 322, 544, 693 |
| Mox20I | TGGCCA | 1 cut(s) | 746 |
| MscI | TGGCCA | 1 cut(s) | 746 |
| MseI | TTAA | 4 cut(s) | 224, 288, 308, 449 |
| MslI | CAYNNNNRTG | 3 cut(s) | 129, 192, 481 |
| Msp20I | TGGCCA | 1 cut(s) | 746 |
| MspI | CCGG | 1 cut(s) | 301 |
| MspR9I | CCNGG | 3 cut(s) | 71, 387, 570 |
| Mva1269I | GAATGC | 1 cut(s) | 715 |
| MvaI | CCWGG | 3 cut(s) | 71, 387, 570 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 30, 74, 551, 560 |
| NdeII | GATC | 3 cut(s) | 5, 244, 811 |
| NlaIII | CATG | 4 cut(s) | 128, 191, 360, 486 |
| NlaIV | GGNNCC | 1 cut(s) | 465 |
| NmuCI | GTSAC | 3 cut(s) | 131, 474, 791 |
| NspI | RCATGY | 2 cut(s) | 128, 486 |
| PciI | ACATGT | 1 cut(s) | 482 |
| PciSI | GCTCTTC | 1 cut(s) | 284 |
| PctI | GAATGC | 1 cut(s) | 715 |
| PflFI | GACNNNGTC | 1 cut(s) | 649 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 619 |
| PkrI | GCNGC | 2 cut(s) | 76, 562 |
| PleI | GAGTC | 1 cut(s) | 481 |
| PpsI | GAGTC | 1 cut(s) | 481 |
| PscI | ACATGT | 1 cut(s) | 482 |
| PshBI | ATTAAT | 1 cut(s) | 449 |
| Psp124BI | GAGCTC | 1 cut(s) | 279 |
| Psp6I | CCWGG | 3 cut(s) | 69, 385, 568 |
| PspGI | CCWGG | 3 cut(s) | 69, 385, 568 |
| PspN4I | GGNNCC | 1 cut(s) | 465 |
| PstNI | CAGNNNCTG | 1 cut(s) | 569 |
| PsyI | GACNNNGTC | 1 cut(s) | 649 |
| RsaI | GTAC | 2 cut(s) | 391, 785 |
| RsaNI | GTAC | 2 cut(s) | 390, 784 |
| RseI | CAYNNNNRTG | 3 cut(s) | 129, 192, 481 |
| SacI | GAGCTC | 1 cut(s) | 279 |
| SalI | GTCGAC | 1 cut(s) | 139 |
| SapI | GCTCTTC | 1 cut(s) | 284 |
| SaqAI | TTAA | 4 cut(s) | 224, 288, 308, 449 |
| SatI | GCNGC | 2 cut(s) | 75, 561 |
| Sau3AI | GATC | 3 cut(s) | 5, 244, 811 |
| SchI | GAGTC | 1 cut(s) | 482 |
| ScrFI | CCNGG | 3 cut(s) | 71, 387, 570 |
| SduI | GDGCHC | 1 cut(s) | 279 |
| SexAI | ACCWGGT | 1 cut(s) | 385 |
| SfaNI | GCATC | 1 cut(s) | 747 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 129, 192, 481 |
| SmlI | CTYRAG | 1 cut(s) | 115 |
| SmoI | CTYRAG | 1 cut(s) | 115 |
| SpeI | ACTAGT | 1 cut(s) | 593 |
| Sse9I | AATT | 7 cut(s) | 352, 379, 399, 424, 450, 659, 669 |
| SsiI | CCGC | 2 cut(s) | 22, 545 |
| SspMI | CTAG | 3 cut(s) | 144, 594, 809 |
| SstI | GAGCTC | 1 cut(s) | 279 |
| StyD4I | CCNGG | 3 cut(s) | 69, 385, 568 |
| TaaI | ACNGT | 4 cut(s) | 44, 439, 609, 739 |
| TaiI | ACGT | 1 cut(s) | 793 |
| TaqI | TCGA | 3 cut(s) | 85, 140, 644 |
| TasI | AATT | 7 cut(s) | 352, 379, 399, 424, 450, 659, 669 |
| Tru1I | TTAA | 4 cut(s) | 224, 288, 308, 449 |
| Tru9I | TTAA | 4 cut(s) | 224, 288, 308, 449 |
| TscAI | CASTG | 1 cut(s) | 570 |
| TseFI | GTSAC | 3 cut(s) | 131, 474, 791 |
| TseI | GCWGC | 2 cut(s) | 74, 560 |
| Tsp45I | GTSAC | 3 cut(s) | 131, 474, 791 |
| TspDTI | ATGAA | 2 cut(s) | 345, 522 |
| TspGWI | ACGGA | 1 cut(s) | 493 |
| TspRI | CASTG | 1 cut(s) | 570 |
| Tth111I | GACNNNGTC | 1 cut(s) | 649 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 619 |
| VspI | ATTAAT | 1 cut(s) | 449 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 99 |
| XapI | RAATTY | 2 cut(s) | 352, 399 |
| XbaI | TCTAGA | 1 cut(s) | 808 |
| XceI | RCATGY | 2 cut(s) | 128, 486 |
| XmiI | GTMKAC | 1 cut(s) | 140 |
| XspI | CTAG | 3 cut(s) | 144, 594, 809 |