Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 166 |
| AccB1I | GGYRCC | 1 cut(s) | 166 |
| AccBSI | CCGCTC | 1 cut(s) | 398 |
| AccI | GTMKAC | 1 cut(s) | 1050 |
| AciI | CCGC | 3 cut(s) | 396, 626, 927 |
| AclWI | GGATC | 2 cut(s) | 127, 140 |
| AfaI | GTAC | 6 cut(s) | 97, 168, 394, 507, 729, 977 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 176, 196 |
| AgsI | TTSAA | 5 cut(s) | 275, 286, 515, 799, 960 |
| AjiI | CACGTC | 1 cut(s) | 947 |
| AjnI | CCWGG | 1 cut(s) | 449 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 394, 426 |
| AleI | CACNNNNGTG | 1 cut(s) | 482 |
| AluBI | AGCT | 8 cut(s) | 13, 278, 602, 618, 896, 991, 1037, 1085 |
| AluI | AGCT | 8 cut(s) | 13, 278, 602, 618, 896, 991, 1037, 1085 |
| Alw21I | GWGCWC | 1 cut(s) | 993 |
| Alw26I | GTCTC | 1 cut(s) | 185 |
| AlwI | GGATC | 2 cut(s) | 127, 140 |
| AoxI | GGCC | 2 cut(s) | 652, 937 |
| ApeKI | GCWGC | 1 cut(s) | 893 |
| Asp718I | GGTACC | 1 cut(s) | 166 |
| AspLEI | GCGC | 1 cut(s) | 780 |
| AsuHPI | GGTGA | 2 cut(s) | 725, 757 |
| AsuII | TTCGAA | 1 cut(s) | 868 |
| BamHI | GGATCC | 1 cut(s) | 132 |
| BanI | GGYRCC | 1 cut(s) | 166 |
| BanII | GRGCYC | 1 cut(s) | 993 |
| BbsI | GAAGAC | 6 cut(s) | 64, 192, 408, 436, 770, 1074 |
| Bbv12I | GWGCWC | 1 cut(s) | 993 |
| BbvI | GCAGC | 1 cut(s) | 905 |
| BccI | CCATC | 3 cut(s) | 123, 538, 812 |
| BceAI | ACGGC | 1 cut(s) | 667 |
| BciT130I | CCWGG | 1 cut(s) | 451 |
| BcoDI | GTCTC | 1 cut(s) | 185 |
| BfaI | CTAG | 2 cut(s) | 423, 615 |
| BfmI | CTRYAG | 1 cut(s) | 245 |
| BfoI | RGCGCY | 1 cut(s) | 781 |
| BisI | GCNGC | 1 cut(s) | 894 |
| BlsI | GCNGC | 1 cut(s) | 895 |
| Bme1390I | CCNGG | 1 cut(s) | 451 |
| BmgBI | CACGTC | 1 cut(s) | 947 |
| BmiI | GGNNCC | 2 cut(s) | 134, 168 |
| BmrFI | CCNGG | 1 cut(s) | 451 |
| BmrI | ACTGGG | 2 cut(s) | 382, 552 |
| BmsI | GCATC | 3 cut(s) | 35, 241, 568 |
| BmuI | ACTGGG | 2 cut(s) | 382, 552 |
| BpiI | GAAGAC | 6 cut(s) | 64, 192, 408, 436, 770, 1074 |
| Bpu14I | TTCGAA | 1 cut(s) | 868 |
| BpuEI | CTTGAG | 1 cut(s) | 977 |
| Bsa29I | ATCGAT | 1 cut(s) | 386 |
| BsaBI | GATNNNNATC | 2 cut(s) | 137, 386 |
| BsaI | GGTCTC | 1 cut(s) | 185 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 426, 456 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 176, 196 |
| Bse1I | ACTGG | 3 cut(s) | 103, 377, 547 |
| Bse3DI | GCAATG | 1 cut(s) | 109 |
| Bse8I | GATNNNNATC | 2 cut(s) | 137, 386 |
| BseBI | CCWGG | 1 cut(s) | 451 |
| BseCI | ATCGAT | 1 cut(s) | 386 |
| BseGI | GGATG | 4 cut(s) | 471, 525, 526, 583 |
| BseJI | GATNNNNATC | 2 cut(s) | 137, 386 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 176, 196 |
| BseMI | GCAATG | 1 cut(s) | 109 |
| BseMII | CTCAG | 1 cut(s) | 182 |
| BseNI | ACTGG | 3 cut(s) | 103, 377, 547 |
| BseRI | GAGGAG | 2 cut(s) | 55, 1047 |
| BseXI | GCAGC | 1 cut(s) | 905 |
| BshFI | GGCC | 2 cut(s) | 654, 939 |
| BshNI | GGYRCC | 1 cut(s) | 166 |
| BshVI | ATCGAT | 1 cut(s) | 386 |
| BsiHKAI | GWGCWC | 1 cut(s) | 993 |
| BsiSI | CCGG | 1 cut(s) | 936 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 176, 196 |
| BsmAI | GTCTC | 1 cut(s) | 185 |
| BsmI | GAATGC | 2 cut(s) | 45, 684 |
| BsnI | GGCC | 2 cut(s) | 654, 939 |
| Bso31I | GGTCTC | 1 cut(s) | 185 |
| Bsp119I | TTCGAA | 1 cut(s) | 868 |
| Bsp1286I | GDGCHC | 1 cut(s) | 993 |
| Bsp1407I | TGTACA | 1 cut(s) | 505 |
| Bsp143I | GATC | 5 cut(s) | 132, 220, 316, 387, 592 |
| BspACI | CCGC | 3 cut(s) | 396, 626, 927 |
| BspANI | GGCC | 2 cut(s) | 654, 939 |
| BspCNI | CTCAG | 1 cut(s) | 183 |
| BspDI | ATCGAT | 1 cut(s) | 386 |
| BspLI | GGNNCC | 2 cut(s) | 134, 168 |
| BspMAI | CTGCAG | 1 cut(s) | 249 |
| BspPI | GGATC | 2 cut(s) | 127, 140 |
| BspQI | GCTCTTC | 1 cut(s) | 841 |
| BspT104I | TTCGAA | 1 cut(s) | 868 |
| BspT107I | GGYRCC | 1 cut(s) | 166 |
| BspTNI | GGTCTC | 1 cut(s) | 185 |
| BsrBI | CCGCTC | 1 cut(s) | 398 |
| BsrDI | GCAATG | 1 cut(s) | 109 |
| BsrGI | TGTACA | 1 cut(s) | 505 |
| BsrI | ACTGG | 3 cut(s) | 103, 377, 547 |
| BssMI | GATC | 5 cut(s) | 132, 220, 316, 387, 592 |
| BssNAI | GTATAC | 1 cut(s) | 1051 |
| Bst1107I | GTATAC | 1 cut(s) | 1051 |
| Bst2UI | CCWGG | 1 cut(s) | 451 |
| Bst4CI | ACNGT | 1 cut(s) | 406 |
| Bst6I | CTCTTC | 5 cut(s) | 491, 749, 841, 1014, 1024 |
| BstAUI | TGTACA | 1 cut(s) | 505 |
| BstBI | TTCGAA | 1 cut(s) | 868 |
| BstC8I | GCNNGC | 2 cut(s) | 782, 918 |
| BstDEI | CTNAG | 2 cut(s) | 191, 709 |
| BstF5I | GGATG | 4 cut(s) | 471, 525, 526, 583 |
| BstH2I | RGCGCY | 1 cut(s) | 781 |
| BstHHI | GCGC | 1 cut(s) | 780 |
| BstKTI | GATC | 5 cut(s) | 135, 223, 319, 390, 595 |
| BstMAI | GTCTC | 1 cut(s) | 185 |
| BstMBI | GATC | 5 cut(s) | 132, 220, 316, 387, 592 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 899, 926, 1043 |
| BstNI | CCWGG | 1 cut(s) | 451 |
| BstNSI | RCATGY | 3 cut(s) | 506, 686, 920 |
| BstSCI | CCNGG | 1 cut(s) | 449 |
| BstSFI | CTRYAG | 1 cut(s) | 245 |
| BstV1I | GCAGC | 1 cut(s) | 905 |
| BstV2I | GAAGAC | 6 cut(s) | 64, 192, 408, 436, 770, 1074 |
| BstX2I | RGATCY | 1 cut(s) | 132 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 484 |
| BstYI | RGATCY | 1 cut(s) | 132 |
| BstZ17I | GTATAC | 1 cut(s) | 1051 |
| Bsu15I | ATCGAT | 1 cut(s) | 386 |
| BsuRI | GGCC | 2 cut(s) | 654, 939 |
| BsuTUI | ATCGAT | 1 cut(s) | 386 |
| BtrI | CACGTC | 1 cut(s) | 947 |
| BtsCI | GGATG | 4 cut(s) | 471, 525, 526, 583 |
| Cac8I | GCNNGC | 2 cut(s) | 782, 918 |
| CfoI | GCGC | 1 cut(s) | 780 |
| ClaI | ATCGAT | 1 cut(s) | 386 |
| Csp6I | GTAC | 6 cut(s) | 96, 167, 393, 506, 728, 976 |
| CviAII | CATG | 6 cut(s) | 36, 266, 503, 671, 683, 917 |
| CviQI | GTAC | 6 cut(s) | 96, 167, 393, 506, 728, 976 |
| DdeI | CTNAG | 2 cut(s) | 191, 709 |
| DpnI | GATC | 5 cut(s) | 134, 222, 318, 389, 594 |
| DpnII | GATC | 5 cut(s) | 132, 220, 316, 387, 592 |
| DraI | TTTAAA | 1 cut(s) | 154 |
| Eam1104I | CTCTTC | 5 cut(s) | 491, 749, 841, 1014, 1024 |
| EarI | CTCTTC | 5 cut(s) | 491, 749, 841, 1014, 1024 |
| Ecl136II | GAGCTC | 1 cut(s) | 991 |
| Eco24I | GRGCYC | 1 cut(s) | 993 |
| Eco31I | GGTCTC | 1 cut(s) | 185 |
| Eco32I | GATATC | 2 cut(s) | 109, 384 |
| Eco53kI | GAGCTC | 1 cut(s) | 991 |
| EcoICRI | GAGCTC | 1 cut(s) | 991 |
| EcoRII | CCWGG | 1 cut(s) | 449 |
| EcoRV | GATATC | 2 cut(s) | 109, 384 |
| EcoT22I | ATGCAT | 1 cut(s) | 684 |
| EcoT38I | GRGCYC | 1 cut(s) | 993 |
| FaeI | CATG | 6 cut(s) | 39, 269, 506, 674, 686, 920 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1021, 1053 |
| FatI | CATG | 6 cut(s) | 35, 265, 502, 670, 682, 916 |
| FblI | GTMKAC | 1 cut(s) | 1050 |
| Fnu4HI | GCNGC | 1 cut(s) | 894 |
| FokI | GGATG | 4 cut(s) | 458, 512, 533, 590 |
| FriOI | GRGCYC | 1 cut(s) | 993 |
| Fsp4HI | GCNGC | 1 cut(s) | 894 |
| FspBI | CTAG | 2 cut(s) | 423, 615 |
| GlaI | GCGC | 1 cut(s) | 779 |
| GluI | GCNGC | 1 cut(s) | 894 |
| HaeII | RGCGCY | 1 cut(s) | 781 |
| HaeIII | GGCC | 2 cut(s) | 654, 939 |
| HapII | CCGG | 1 cut(s) | 936 |
| HhaI | GCGC | 1 cut(s) | 780 |
| Hin1II | CATG | 6 cut(s) | 39, 269, 506, 674, 686, 920 |
| Hin6I | GCGC | 1 cut(s) | 778 |
| HinP1I | GCGC | 1 cut(s) | 778 |
| HinfI | GANTC | 4 cut(s) | 225, 289, 435, 888 |
| HpaII | CCGG | 1 cut(s) | 936 |
| HphI | GGTGA | 2 cut(s) | 725, 757 |
| Hpy166II | GTNNAC | 3 cut(s) | 633, 692, 1051 |
| Hpy188I | TCNGA | 4 cut(s) | 10, 262, 954, 971 |
| Hpy188III | TCNNGA | 3 cut(s) | 182, 515, 994 |
| Hpy8I | GTNNAC | 3 cut(s) | 633, 692, 1051 |
| Hpy99I | CGWCG | 1 cut(s) | 951 |
| HpyAV | CCTTC | 2 cut(s) | 67, 991 |
| HpyCH4III | ACNGT | 1 cut(s) | 406 |
| HpyCH4IV | ACGT | 1 cut(s) | 946 |
| HpyCH4V | TGCA | 3 cut(s) | 247, 682, 944 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 899, 926, 1043 |
| HpyF3I | CTNAG | 2 cut(s) | 191, 709 |
| HpySE526I | ACGT | 1 cut(s) | 946 |
| Hsp92II | CATG | 6 cut(s) | 39, 269, 506, 674, 686, 920 |
| HspAI | GCGC | 1 cut(s) | 778 |
| KpnI | GGTACC | 1 cut(s) | 170 |
| Kzo9I | GATC | 5 cut(s) | 132, 220, 316, 387, 592 |
| LguI | GCTCTTC | 1 cut(s) | 841 |
| LmnI | GCTCC | 6 cut(s) | 10, 42, 403, 733, 775, 1034 |
| Lsp1109I | GCAGC | 1 cut(s) | 905 |
| LweI | GCATC | 3 cut(s) | 35, 241, 568 |
| MaeI | CTAG | 2 cut(s) | 423, 615 |
| MaeII | ACGT | 1 cut(s) | 946 |
| MaeIII | GTNAC | 1 cut(s) | 350 |
| MalI | GATC | 5 cut(s) | 134, 222, 318, 389, 594 |
| MbiI | CCGCTC | 1 cut(s) | 398 |
| MboI | GATC | 5 cut(s) | 132, 220, 316, 387, 592 |
| MflI | RGATCY | 1 cut(s) | 132 |
| MhlI | GDGCHC | 1 cut(s) | 993 |
| MlyI | GAGTC | 2 cut(s) | 234, 444 |
| MmeI | TCCRAC | 1 cut(s) | 425 |
| Mph1103I | ATGCAT | 1 cut(s) | 684 |
| MseI | TTAA | 8 cut(s) | 153, 206, 551, 804, 828, 912, 1014, 1089 |
| MslI | CAYNNNNRTG | 2 cut(s) | 34, 482 |
| MspA1I | CMGCKG | 1 cut(s) | 896 |
| MspI | CCGG | 1 cut(s) | 936 |
| MspR9I | CCNGG | 1 cut(s) | 451 |
| MssI | GTTTAAAC | 1 cut(s) | 154 |
| Mva1269I | GAATGC | 2 cut(s) | 45, 684 |
| MvaI | CCWGG | 1 cut(s) | 451 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 899, 926, 1043 |
| NdeII | GATC | 5 cut(s) | 132, 220, 316, 387, 592 |
| NlaIII | CATG | 6 cut(s) | 39, 269, 506, 674, 686, 920 |
| NlaIV | GGNNCC | 2 cut(s) | 134, 168 |
| NmeAIII | GCCGAG | 1 cut(s) | 810 |
| NsiI | ATGCAT | 1 cut(s) | 684 |
| NspI | RCATGY | 3 cut(s) | 506, 686, 920 |
| NspV | TTCGAA | 1 cut(s) | 868 |
| OliI | CACNNNNGTG | 1 cut(s) | 482 |
| PaeI | GCATGC | 1 cut(s) | 920 |
| PciSI | GCTCTTC | 1 cut(s) | 841 |
| PctI | GAATGC | 2 cut(s) | 45, 684 |
| PfeI | GAWTC | 2 cut(s) | 289, 888 |
| PfoI | TCCNGGA | 1 cut(s) | 449 |
| PkrI | GCNGC | 1 cut(s) | 895 |
| PleI | GAGTC | 2 cut(s) | 233, 443 |
| PmeI | GTTTAAAC | 1 cut(s) | 154 |
| PpsI | GAGTC | 2 cut(s) | 233, 443 |
| Psp124BI | GAGCTC | 1 cut(s) | 993 |
| Psp6I | CCWGG | 1 cut(s) | 449 |
| PspGI | CCWGG | 1 cut(s) | 449 |
| PspN4I | GGNNCC | 2 cut(s) | 134, 168 |
| PstI | CTGCAG | 1 cut(s) | 249 |
| PsuI | RGATCY | 1 cut(s) | 132 |
| PvuII | CAGCTG | 1 cut(s) | 896 |
| RsaI | GTAC | 6 cut(s) | 97, 168, 394, 507, 729, 977 |
| RsaNI | GTAC | 6 cut(s) | 96, 167, 393, 506, 728, 976 |
| RseI | CAYNNNNRTG | 2 cut(s) | 34, 482 |
| SacI | GAGCTC | 1 cut(s) | 993 |
| SapI | GCTCTTC | 1 cut(s) | 841 |
| SaqAI | TTAA | 8 cut(s) | 153, 206, 551, 804, 828, 912, 1014, 1089 |
| SatI | GCNGC | 1 cut(s) | 894 |
| Sau3AI | GATC | 5 cut(s) | 132, 220, 316, 387, 592 |
| SbfI | CCTGCAGG | 1 cut(s) | 249 |
| SchI | GAGTC | 2 cut(s) | 234, 444 |
| ScrFI | CCNGG | 1 cut(s) | 451 |
| SdaI | CCTGCAGG | 1 cut(s) | 249 |
| SduI | GDGCHC | 1 cut(s) | 993 |
| SfaNI | GCATC | 3 cut(s) | 35, 241, 568 |
| SfcI | CTRYAG | 1 cut(s) | 245 |
| SfuI | TTCGAA | 1 cut(s) | 868 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 34, 482 |
| SmlI | CTYRAG | 1 cut(s) | 992 |
| SmoI | CTYRAG | 1 cut(s) | 992 |
| SphI | GCATGC | 1 cut(s) | 920 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 249 |
| SsiI | CCGC | 3 cut(s) | 396, 626, 927 |
| SspI | AATATT | 1 cut(s) | 1100 |
| SspMI | CTAG | 2 cut(s) | 423, 615 |
| SstI | GAGCTC | 1 cut(s) | 993 |
| StyD4I | CCNGG | 1 cut(s) | 449 |
| TaaI | ACNGT | 1 cut(s) | 406 |
| TaiI | ACGT | 1 cut(s) | 949 |
| TaqI | TCGA | 6 cut(s) | 183, 223, 386, 657, 868, 987 |
| TaqII | GACCGA | 1 cut(s) | 103 |
| TatI | WGTACW | 2 cut(s) | 505, 727 |
| TfiI | GAWTC | 2 cut(s) | 289, 888 |
| Tru1I | TTAA | 8 cut(s) | 153, 206, 551, 804, 828, 912, 1014, 1089 |
| Tru9I | TTAA | 8 cut(s) | 153, 206, 551, 804, 828, 912, 1014, 1089 |
| TseI | GCWGC | 1 cut(s) | 893 |
| TspDTI | ATGAA | 3 cut(s) | 17, 227, 767 |
| XceI | RCATGY | 3 cut(s) | 506, 686, 920 |
| XmiI | GTMKAC | 1 cut(s) | 1050 |
| XspI | CTAG | 2 cut(s) | 423, 615 |
| Zsp2I | ATGCAT | 1 cut(s) | 684 |