ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 237 - 307 | 3.6e-13 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 52 |
| AccI | GTMKAC | 1 cut(s) | 305 |
| AccIII | TCCGGA | 1 cut(s) | 771 |
| AciI | CCGC | 5 cut(s) | 56, 326, 413, 470, 687 |
| AclWI | GGATC | 2 cut(s) | 88, 390 |
| AcsI | RAATTY | 1 cut(s) | 762 |
| AfaI | GTAC | 2 cut(s) | 254, 647 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 52, 655, 778 |
| AflIII | ACRYGT | 1 cut(s) | 642 |
| AgsI | TTSAA | 4 cut(s) | 172, 212, 943, 973 |
| AhlI | ACTAGT | 1 cut(s) | 589 |
| AluBI | AGCT | 5 cut(s) | 107, 334, 523, 677, 905 |
| AluI | AGCT | 5 cut(s) | 107, 334, 523, 677, 905 |
| Alw21I | GWGCWC | 1 cut(s) | 957 |
| Alw26I | GTCTC | 1 cut(s) | 866 |
| AlwI | GGATC | 2 cut(s) | 88, 390 |
| Aor13HI | TCCGGA | 1 cut(s) | 771 |
| AoxI | GGCC | 2 cut(s) | 573, 928 |
| ApaI | GGGCCC | 1 cut(s) | 932 |
| ApeKI | GCWGC | 3 cut(s) | 404, 689, 806 |
| ApoI | RAATTY | 1 cut(s) | 762 |
| AseI | ATTAAT | 1 cut(s) | 206 |
| AspS9I | GGNCC | 2 cut(s) | 928, 929 |
| AsuHPI | GGTGA | 5 cut(s) | 83, 426, 707, 721, 878 |
| AsuII | TTCGAA | 1 cut(s) | 154 |
| AsuNHI | GCTAGC | 1 cut(s) | 184 |
| BaeGI | GKGCMC | 1 cut(s) | 932 |
| BanII | GRGCYC | 1 cut(s) | 932 |
| BauI | CACGAG | 1 cut(s) | 801 |
| BbsI | GAAGAC | 1 cut(s) | 230 |
| Bbv12I | GWGCWC | 1 cut(s) | 957 |
| BbvI | GCAGC | 3 cut(s) | 391, 676, 793 |
| BccI | CCATC | 4 cut(s) | 363, 446, 700, 967 |
| BceAI | ACGGC | 1 cut(s) | 392 |
| BciVI | GTATCC | 1 cut(s) | 629 |
| BcoDI | GTCTC | 1 cut(s) | 866 |
| BcuI | ACTAGT | 1 cut(s) | 589 |
| BfaI | CTAG | 4 cut(s) | 185, 464, 590, 741 |
| BfuI | GTATCC | 1 cut(s) | 629 |
| BisI | GCNGC | 3 cut(s) | 405, 690, 807 |
| BlsI | GCNGC | 3 cut(s) | 406, 691, 808 |
| BmcAI | AGTACT | 1 cut(s) | 254 |
| BmgT120I | GGNCC | 2 cut(s) | 928, 929 |
| BmiI | GGNNCC | 2 cut(s) | 930, 931 |
| BmsI | GCATC | 1 cut(s) | 30 |
| BmtI | GCTAGC | 1 cut(s) | 188 |
| BpiI | GAAGAC | 1 cut(s) | 230 |
| Bpu14I | TTCGAA | 1 cut(s) | 154 |
| BsaAI | YACGTR | 1 cut(s) | 643 |
| BsaI | GGTCTC | 1 cut(s) | 866 |
| BsaJI | CCNNGG | 2 cut(s) | 399, 570 |
| BsaWI | WCCGGW | 1 cut(s) | 771 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 104, 134 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 52, 655, 778 |
| Bse3DI | GCAATG | 2 cut(s) | 321, 910 |
| BseAI | TCCGGA | 1 cut(s) | 771 |
| BseDI | CCNNGG | 2 cut(s) | 399, 570 |
| BseGI | GGATG | 1 cut(s) | 711 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 52, 655, 778 |
| BseMI | GCAATG | 2 cut(s) | 321, 910 |
| BseSI | GKGCMC | 1 cut(s) | 932 |
| BseXI | GCAGC | 3 cut(s) | 391, 676, 793 |
| BshFI | GGCC | 2 cut(s) | 575, 930 |
| BsiHKAI | GWGCWC | 1 cut(s) | 957 |
| BsiSI | CCGG | 2 cut(s) | 218, 772 |
| BslFI | GGGAC | 1 cut(s) | 463 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 52, 655, 778 |
| BsmAI | GTCTC | 1 cut(s) | 866 |
| BsmFI | GGGAC | 1 cut(s) | 463 |
| BsnI | GGCC | 2 cut(s) | 575, 930 |
| Bso31I | GGTCTC | 1 cut(s) | 866 |
| Bsp119I | TTCGAA | 1 cut(s) | 154 |
| Bsp120I | GGGCCC | 1 cut(s) | 928 |
| Bsp1286I | GDGCHC | 2 cut(s) | 932, 957 |
| Bsp13I | TCCGGA | 1 cut(s) | 771 |
| Bsp143I | GATC | 2 cut(s) | 93, 395 |
| BspACI | CCGC | 5 cut(s) | 56, 326, 413, 470, 687 |
| BspANI | GGCC | 2 cut(s) | 575, 930 |
| BspEI | TCCGGA | 1 cut(s) | 771 |
| BspLI | GGNNCC | 2 cut(s) | 930, 931 |
| BspOI | GCTAGC | 1 cut(s) | 188 |
| BspPI | GGATC | 2 cut(s) | 88, 390 |
| BspT104I | TTCGAA | 1 cut(s) | 154 |
| BspTNI | GGTCTC | 1 cut(s) | 866 |
| BsrDI | GCAATG | 2 cut(s) | 321, 910 |
| BssECI | CCNNGG | 2 cut(s) | 399, 570 |
| BssMI | GATC | 2 cut(s) | 93, 395 |
| BssNAI | GTATAC | 1 cut(s) | 306 |
| BssSI | CACGAG | 1 cut(s) | 801 |
| Bst1107I | GTATAC | 1 cut(s) | 306 |
| Bst2BI | CACGAG | 1 cut(s) | 801 |
| Bst4CI | ACNGT | 2 cut(s) | 650, 899 |
| BstBAI | YACGTR | 1 cut(s) | 643 |
| BstBI | TTCGAA | 1 cut(s) | 154 |
| BstC8I | GCNNGC | 4 cut(s) | 165, 186, 328, 332 |
| BstDEI | CTNAG | 1 cut(s) | 175 |
| BstDSI | CCRYGG | 1 cut(s) | 399 |
| BstF5I | GGATG | 1 cut(s) | 711 |
| BstKTI | GATC | 2 cut(s) | 96, 398 |
| BstMAI | GTCTC | 1 cut(s) | 866 |
| BstMBI | GATC | 2 cut(s) | 93, 395 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 185, 190, 199 |
| BstNSI | RCATGY | 2 cut(s) | 163, 167 |
| BstSLI | GKGCMC | 1 cut(s) | 932 |
| BstV1I | GCAGC | 3 cut(s) | 391, 676, 793 |
| BstV2I | GAAGAC | 1 cut(s) | 230 |
| BstX2I | RGATCY | 2 cut(s) | 93, 395 |
| BstYI | RGATCY | 2 cut(s) | 93, 395 |
| BstZ17I | GTATAC | 1 cut(s) | 306 |
| BsuI | GTATCC | 1 cut(s) | 629 |
| BsuRI | GGCC | 2 cut(s) | 575, 930 |
| BtgI | CCRYGG | 1 cut(s) | 399 |
| BtgZI | GCGATG | 1 cut(s) | 382 |
| BtsCI | GGATG | 1 cut(s) | 711 |
| Cac8I | GCNNGC | 4 cut(s) | 165, 186, 328, 332 |
| Cfr13I | GGNCC | 2 cut(s) | 928, 929 |
| Csp6I | GTAC | 2 cut(s) | 253, 646 |
| CviAII | CATG | 6 cut(s) | 35, 160, 164, 442, 863, 884 |
| CviQI | GTAC | 2 cut(s) | 253, 646 |
| DdeI | CTNAG | 1 cut(s) | 175 |
| DpnI | GATC | 2 cut(s) | 95, 397 |
| DpnII | GATC | 2 cut(s) | 93, 395 |
| DraI | TTTAAA | 1 cut(s) | 892 |
| EciI | GGCGGA | 1 cut(s) | 485 |
| Eco24I | GRGCYC | 1 cut(s) | 932 |
| Eco31I | GGTCTC | 1 cut(s) | 866 |
| EcoO109I | RGGNCCY | 1 cut(s) | 929 |
| EcoT22I | ATGCAT | 1 cut(s) | 165 |
| EcoT38I | GRGCYC | 1 cut(s) | 932 |
| FaeI | CATG | 6 cut(s) | 38, 163, 167, 445, 866, 887 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 536, 568 |
| FaqI | GGGAC | 1 cut(s) | 463 |
| FatI | CATG | 6 cut(s) | 34, 159, 163, 441, 862, 883 |
| FauI | CCCGC | 2 cut(s) | 49, 319 |
| FblI | GTMKAC | 1 cut(s) | 305 |
| Fnu4HI | GCNGC | 3 cut(s) | 405, 690, 807 |
| FokI | GGATG | 1 cut(s) | 718 |
| FriOI | GRGCYC | 1 cut(s) | 932 |
| Fsp4HI | GCNGC | 3 cut(s) | 405, 690, 807 |
| FspBI | CTAG | 4 cut(s) | 185, 464, 590, 741 |
| GluI | GCNGC | 3 cut(s) | 405, 690, 807 |
| HaeIII | GGCC | 2 cut(s) | 575, 930 |
| HapII | CCGG | 2 cut(s) | 218, 772 |
| Hin1II | CATG | 6 cut(s) | 38, 163, 167, 445, 866, 887 |
| HindIII | AAGCTT | 2 cut(s) | 675, 903 |
| HinfI | GANTC | 4 cut(s) | 16, 221, 566, 817 |
| HpaII | CCGG | 2 cut(s) | 218, 772 |
| HphI | GGTGA | 5 cut(s) | 83, 426, 707, 721, 878 |
| Hpy166II | GTNNAC | 2 cut(s) | 306, 646 |
| Hpy188I | TCNGA | 6 cut(s) | 21, 243, 261, 531, 571, 761 |
| Hpy188III | TCNNGA | 1 cut(s) | 772 |
| Hpy8I | GTNNAC | 2 cut(s) | 306, 646 |
| HpyAV | CCTTC | 6 cut(s) | 81, 131, 440, 538, 695, 730 |
| HpyCH4III | ACNGT | 2 cut(s) | 650, 899 |
| HpyCH4IV | ACGT | 1 cut(s) | 642 |
| HpyCH4V | TGCA | 3 cut(s) | 43, 163, 910 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 185, 190, 199 |
| HpyF3I | CTNAG | 1 cut(s) | 175 |
| HpySE526I | ACGT | 1 cut(s) | 642 |
| Hsp92II | CATG | 6 cut(s) | 38, 163, 167, 445, 866, 887 |
| Kpn2I | TCCGGA | 1 cut(s) | 771 |
| Kzo9I | GATC | 2 cut(s) | 93, 395 |
| LmnI | GCTCC | 1 cut(s) | 837 |
| LpnPI | CCDG | 3 cut(s) | 231, 678, 785 |
| Lsp1109I | GCAGC | 3 cut(s) | 391, 676, 793 |
| LweI | GCATC | 1 cut(s) | 30 |
| MaeI | CTAG | 4 cut(s) | 185, 464, 590, 741 |
| MaeII | ACGT | 1 cut(s) | 642 |
| MaeIII | GTNAC | 1 cut(s) | 650 |
| MalI | GATC | 2 cut(s) | 95, 397 |
| MboI | GATC | 2 cut(s) | 93, 395 |
| MboII | GAAGA | 4 cut(s) | 103, 230, 547, 593 |
| MflI | RGATCY | 2 cut(s) | 93, 395 |
| MhlI | GDGCHC | 2 cut(s) | 932, 957 |
| MluCI | AATT | 4 cut(s) | 207, 228, 477, 762 |
| MlyI | GAGTC | 2 cut(s) | 575, 811 |
| MmeI | TCCRAC | 1 cut(s) | 486 |
| Mph1103I | ATGCAT | 1 cut(s) | 165 |
| MroI | TCCGGA | 1 cut(s) | 771 |
| MseI | TTAA | 4 cut(s) | 206, 227, 891, 935 |
| MslI | CAYNNNNRTG | 1 cut(s) | 867 |
| MspA1I | CMGCKG | 1 cut(s) | 689 |
| MspI | CCGG | 2 cut(s) | 218, 772 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 185, 190, 199 |
| NdeII | GATC | 2 cut(s) | 93, 395 |
| NheI | GCTAGC | 1 cut(s) | 184 |
| NlaIII | CATG | 6 cut(s) | 38, 163, 167, 445, 866, 887 |
| NlaIV | GGNNCC | 2 cut(s) | 930, 931 |
| NsiI | ATGCAT | 1 cut(s) | 165 |
| NspI | RCATGY | 2 cut(s) | 163, 167 |
| NspV | TTCGAA | 1 cut(s) | 154 |
| PaeI | GCATGC | 1 cut(s) | 167 |
| PfeI | GAWTC | 2 cut(s) | 16, 221 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 52 |
| PkrI | GCNGC | 3 cut(s) | 406, 691, 808 |
| PleI | GAGTC | 2 cut(s) | 574, 811 |
| PpsI | GAGTC | 2 cut(s) | 574, 811 |
| Ppu21I | YACGTR | 1 cut(s) | 643 |
| PshBI | ATTAAT | 1 cut(s) | 206 |
| PspN4I | GGNNCC | 2 cut(s) | 930, 931 |
| PspOMI | GGGCCC | 1 cut(s) | 928 |
| PspPI | GGNCC | 2 cut(s) | 928, 929 |
| PsuI | RGATCY | 2 cut(s) | 93, 395 |
| RsaI | GTAC | 2 cut(s) | 254, 647 |
| RsaNI | GTAC | 2 cut(s) | 253, 646 |
| RseI | CAYNNNNRTG | 1 cut(s) | 867 |
| SaqAI | TTAA | 4 cut(s) | 206, 227, 891, 935 |
| SatI | GCNGC | 3 cut(s) | 405, 690, 807 |
| Sau3AI | GATC | 2 cut(s) | 93, 395 |
| Sau96I | GGNCC | 2 cut(s) | 928, 929 |
| ScaI | AGTACT | 1 cut(s) | 254 |
| SchI | GAGTC | 2 cut(s) | 575, 811 |
| SduI | GDGCHC | 2 cut(s) | 932, 957 |
| SfaNI | GCATC | 1 cut(s) | 30 |
| SfuI | TTCGAA | 1 cut(s) | 154 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 867 |
| SpeI | ACTAGT | 1 cut(s) | 589 |
| SphI | GCATGC | 1 cut(s) | 167 |
| Sse9I | AATT | 4 cut(s) | 207, 228, 477, 762 |
| SsiI | CCGC | 5 cut(s) | 56, 326, 413, 470, 687 |
| SspI | AATATT | 1 cut(s) | 380 |
| SspMI | CTAG | 4 cut(s) | 185, 464, 590, 741 |
| TaaI | ACNGT | 2 cut(s) | 650, 899 |
| TaiI | ACGT | 1 cut(s) | 645 |
| TaqI | TCGA | 4 cut(s) | 154, 542, 555, 680 |
| TaqII | GACCGA | 2 cut(s) | 646, 890 |
| TasI | AATT | 4 cut(s) | 207, 228, 477, 762 |
| TatI | WGTACW | 1 cut(s) | 252 |
| TfiI | GAWTC | 2 cut(s) | 16, 221 |
| Tru1I | TTAA | 4 cut(s) | 206, 227, 891, 935 |
| Tru9I | TTAA | 4 cut(s) | 206, 227, 891, 935 |
| TseI | GCWGC | 3 cut(s) | 404, 689, 806 |
| TspDTI | ATGAA | 1 cut(s) | 872 |
| TspGWI | ACGGA | 2 cut(s) | 388, 467 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 52 |
| VspI | ATTAAT | 1 cut(s) | 206 |
| XapI | RAATTY | 1 cut(s) | 762 |
| XceI | RCATGY | 2 cut(s) | 163, 167 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 366 |
| XmiI | GTMKAC | 1 cut(s) | 305 |
| XspI | CTAG | 4 cut(s) | 185, 464, 590, 741 |
| ZrmI | AGTACT | 1 cut(s) | 254 |
| Zsp2I | ATGCAT | 1 cut(s) | 165 |