Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 39 |
| AccB1I | GGYRCC | 1 cut(s) | 74 |
| AciI | CCGC | 3 cut(s) | 56, 113, 739 |
| AcoI | YGGCCR | 1 cut(s) | 57 |
| AcuI | CTGAAG | 1 cut(s) | 438 |
| AfaI | GTAC | 1 cut(s) | 557 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 783 |
| AflII | CTTAAG | 1 cut(s) | 473 |
| AgsI | TTSAA | 3 cut(s) | 298, 542, 613 |
| AluBI | AGCT | 3 cut(s) | 449, 582, 736 |
| AluI | AGCT | 3 cut(s) | 449, 582, 736 |
| Alw21I | GWGCWC | 1 cut(s) | 738 |
| AoxI | GGCC | 2 cut(s) | 57, 774 |
| AspS9I | GGNCC | 3 cut(s) | 326, 622, 775 |
| AsuC2I | CCSGG | 1 cut(s) | 324 |
| AsuHPI | GGTGA | 1 cut(s) | 44 |
| AvaII | GGWCC | 2 cut(s) | 326, 622 |
| AxyI | CCTNAGG | 1 cut(s) | 505 |
| BaeGI | GKGCMC | 1 cut(s) | 79 |
| BanI | GGYRCC | 1 cut(s) | 74 |
| BanII | GRGCYC | 1 cut(s) | 738 |
| BbsI | GAAGAC | 2 cut(s) | 557, 659 |
| Bbv12I | GWGCWC | 1 cut(s) | 738 |
| BccI | CCATC | 4 cut(s) | 326, 586, 718, 766 |
| BclI | TGATCA | 1 cut(s) | 684 |
| BcnI | CCSGG | 1 cut(s) | 324 |
| BfaI | CTAG | 1 cut(s) | 212 |
| BfrI | CTTAAG | 1 cut(s) | 473 |
| BisI | GCNGC | 2 cut(s) | 57, 114 |
| BlsI | GCNGC | 2 cut(s) | 58, 115 |
| BmcAI | AGTACT | 1 cut(s) | 557 |
| Bme1390I | CCNGG | 1 cut(s) | 324 |
| Bme18I | GGWCC | 2 cut(s) | 326, 622 |
| BmgT120I | GGNCC | 3 cut(s) | 326, 622, 775 |
| BmiI | GGNNCC | 3 cut(s) | 76, 327, 328 |
| BmrFI | CCNGG | 1 cut(s) | 324 |
| BoxI | GACNNNNGTC | 1 cut(s) | 804 |
| BpiI | GAAGAC | 2 cut(s) | 557, 659 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 488, 520 |
| BpmI | CTGGAG | 1 cut(s) | 161 |
| BpuEI | CTTGAG | 1 cut(s) | 621 |
| BpuMI | CCSGG | 1 cut(s) | 324 |
| BsaJI | CCNNGG | 2 cut(s) | 17, 570 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 783 |
| Bse1I | ACTGG | 3 cut(s) | 144, 266, 824 |
| Bse21I | CCTNAGG | 1 cut(s) | 505 |
| BseDI | CCNNGG | 2 cut(s) | 17, 570 |
| BseGI | GGATG | 1 cut(s) | 710 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 783 |
| BseMII | CTCAG | 2 cut(s) | 71, 519 |
| BseNI | ACTGG | 3 cut(s) | 144, 266, 824 |
| BseRI | GAGGAG | 1 cut(s) | 158 |
| BseSI | GKGCMC | 1 cut(s) | 79 |
| BseX3I | CGGCCG | 1 cut(s) | 57 |
| BseYI | CCCAGC | 1 cut(s) | 449 |
| Bsh1285I | CGRYCG | 1 cut(s) | 60 |
| BshFI | GGCC | 2 cut(s) | 59, 776 |
| BshNI | GGYRCC | 1 cut(s) | 74 |
| BsiEI | CGRYCG | 1 cut(s) | 60 |
| BsiHKAI | GWGCWC | 1 cut(s) | 738 |
| BsiSI | CCGG | 1 cut(s) | 323 |
| BslFI | GGGAC | 1 cut(s) | 312 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 783 |
| BsmFI | GGGAC | 1 cut(s) | 312 |
| BsnI | GGCC | 2 cut(s) | 59, 776 |
| Bsp1286I | GDGCHC | 2 cut(s) | 79, 738 |
| Bsp143I | GATC | 1 cut(s) | 684 |
| Bsp19I | CCATGG | 1 cut(s) | 17 |
| BspACI | CCGC | 3 cut(s) | 56, 113, 739 |
| BspANI | GGCC | 2 cut(s) | 59, 776 |
| BspCNI | CTCAG | 2 cut(s) | 72, 518 |
| BspLI | GGNNCC | 3 cut(s) | 76, 327, 328 |
| BspT107I | GGYRCC | 1 cut(s) | 74 |
| BspTI | CTTAAG | 1 cut(s) | 473 |
| BsrI | ACTGG | 3 cut(s) | 144, 266, 824 |
| BssECI | CCNNGG | 2 cut(s) | 17, 570 |
| BssMI | GATC | 1 cut(s) | 684 |
| BssT1I | CCWWGG | 1 cut(s) | 17 |
| Bst6I | CTCTTC | 1 cut(s) | 293 |
| BstAFI | CTTAAG | 1 cut(s) | 473 |
| BstC8I | GCNNGC | 2 cut(s) | 111, 743 |
| BstDEI | CTNAG | 3 cut(s) | 80, 505, 588 |
| BstDSI | CCRYGG | 2 cut(s) | 17, 570 |
| BstF5I | GGATG | 1 cut(s) | 710 |
| BstKTI | GATC | 1 cut(s) | 687 |
| BstMBI | GATC | 1 cut(s) | 684 |
| BstMCI | CGRYCG | 1 cut(s) | 60 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 119, 742 |
| BstNSI | RCATGY | 2 cut(s) | 109, 113 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 804 |
| BstSCI | CCNGG | 1 cut(s) | 322 |
| BstSLI | GKGCMC | 1 cut(s) | 79 |
| BstV2I | GAAGAC | 2 cut(s) | 557, 659 |
| BstZI | CGGCCG | 1 cut(s) | 57 |
| Bsu36I | CCTNAGG | 1 cut(s) | 505 |
| BsuRI | GGCC | 2 cut(s) | 59, 776 |
| BtgI | CCRYGG | 2 cut(s) | 17, 570 |
| BtsCI | GGATG | 1 cut(s) | 710 |
| BtsI | GCAGTG | 2 cut(s) | 260, 699 |
| BtsIMutI | CAGTG | 3 cut(s) | 260, 699, 817 |
| Cac8I | GCNNGC | 2 cut(s) | 111, 743 |
| Cfr13I | GGNCC | 3 cut(s) | 326, 622, 775 |
| Csp6I | GTAC | 1 cut(s) | 556 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 52, 87 |
| CviAII | CATG | 6 cut(s) | 18, 106, 110, 224, 548, 828 |
| CviJI | RGCY | 8 cut(s) | 59, 116, 395, 449, 470, 582, 736, 776 |
| CviKI_1 | RGCY | 8 cut(s) | 59, 116, 395, 449, 470, 582, 736, 776 |
| CviQI | GTAC | 1 cut(s) | 556 |
| DdeI | CTNAG | 3 cut(s) | 80, 505, 588 |
| DpnI | GATC | 1 cut(s) | 686 |
| DpnII | GATC | 1 cut(s) | 684 |
| EaeI | YGGCCR | 1 cut(s) | 57 |
| EagI | CGGCCG | 1 cut(s) | 57 |
| Eam1104I | CTCTTC | 1 cut(s) | 293 |
| EarI | CTCTTC | 1 cut(s) | 293 |
| Ecl136II | GAGCTC | 1 cut(s) | 736 |
| EclXI | CGGCCG | 1 cut(s) | 57 |
| Eco130I | CCWWGG | 1 cut(s) | 17 |
| Eco24I | GRGCYC | 1 cut(s) | 738 |
| Eco47I | GGWCC | 2 cut(s) | 326, 622 |
| Eco52I | CGGCCG | 1 cut(s) | 57 |
| Eco53kI | GAGCTC | 1 cut(s) | 736 |
| Eco57I | CTGAAG | 1 cut(s) | 438 |
| Eco81I | CCTNAGG | 1 cut(s) | 505 |
| EcoICRI | GAGCTC | 1 cut(s) | 736 |
| EcoO109I | RGGNCCY | 1 cut(s) | 326 |
| EcoT14I | CCWWGG | 1 cut(s) | 17 |
| EcoT22I | ATGCAT | 2 cut(s) | 111, 225 |
| EcoT38I | GRGCYC | 1 cut(s) | 738 |
| ErhI | CCWWGG | 1 cut(s) | 17 |
| FaeI | CATG | 6 cut(s) | 21, 109, 113, 227, 551, 831 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 665, 697 |
| FaqI | GGGAC | 1 cut(s) | 312 |
| FatI | CATG | 6 cut(s) | 17, 105, 109, 223, 547, 827 |
| FbaI | TGATCA | 1 cut(s) | 684 |
| Fnu4HI | GCNGC | 2 cut(s) | 57, 114 |
| FokI | GGATG | 1 cut(s) | 697 |
| FriOI | GRGCYC | 1 cut(s) | 738 |
| Fsp4HI | GCNGC | 2 cut(s) | 57, 114 |
| FspBI | CTAG | 1 cut(s) | 212 |
| GluI | GCNGC | 2 cut(s) | 57, 114 |
| GsaI | CCCAGC | 1 cut(s) | 453 |
| GsuI | CTGGAG | 1 cut(s) | 161 |
| HaeIII | GGCC | 2 cut(s) | 59, 776 |
| HapII | CCGG | 1 cut(s) | 323 |
| Hin1II | CATG | 6 cut(s) | 21, 109, 113, 227, 551, 831 |
| HinfI | GANTC | 3 cut(s) | 428, 634, 814 |
| HpaII | CCGG | 1 cut(s) | 323 |
| HphI | GGTGA | 1 cut(s) | 44 |
| Hpy188I | TCNGA | 3 cut(s) | 418, 490, 626 |
| Hpy188III | TCNNGA | 6 cut(s) | 202, 212, 329, 610, 682, 755 |
| HpyAV | CCTTC | 2 cut(s) | 613, 667 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 109, 223, 307, 532 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 119, 742 |
| HpyF3I | CTNAG | 3 cut(s) | 80, 505, 588 |
| Hsp92II | CATG | 6 cut(s) | 21, 109, 113, 227, 551, 831 |
| KflI | GGGWCCC | 1 cut(s) | 326 |
| Ksp22I | TGATCA | 1 cut(s) | 684 |
| Kzo9I | GATC | 1 cut(s) | 684 |
| LmnI | GCTCC | 1 cut(s) | 741 |
| MaeI | CTAG | 1 cut(s) | 212 |
| MalI | GATC | 1 cut(s) | 686 |
| MboI | GATC | 1 cut(s) | 684 |
| MboII | GAAGA | 6 cut(s) | 5, 310, 430, 431, 557, 664 |
| MhlI | GDGCHC | 2 cut(s) | 79, 738 |
| MluCI | AATT | 3 cut(s) | 247, 576, 705 |
| MlyI | GAGTC | 1 cut(s) | 628 |
| MnlI | CCTC | 9 cut(s) | 136, 201, 235, 274, 447, 451, 460, 514, 639 |
| Mph1103I | ATGCAT | 2 cut(s) | 111, 225 |
| MseI | TTAA | 2 cut(s) | 165, 474 |
| MspCI | CTTAAG | 1 cut(s) | 473 |
| MspI | CCGG | 1 cut(s) | 323 |
| MspR9I | CCNGG | 1 cut(s) | 324 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 119, 742 |
| NciI | CCSGG | 1 cut(s) | 324 |
| NcoI | CCATGG | 1 cut(s) | 17 |
| NdeII | GATC | 1 cut(s) | 684 |
| NlaIII | CATG | 6 cut(s) | 21, 109, 113, 227, 551, 831 |
| NlaIV | GGNNCC | 3 cut(s) | 76, 327, 328 |
| NsiI | ATGCAT | 2 cut(s) | 111, 225 |
| NspI | RCATGY | 2 cut(s) | 109, 113 |
| PaeI | GCATGC | 1 cut(s) | 113 |
| PfeI | GAWTC | 2 cut(s) | 428, 814 |
| PkrI | GCNGC | 2 cut(s) | 58, 115 |
| PleI | GAGTC | 1 cut(s) | 628 |
| PpsI | GAGTC | 1 cut(s) | 628 |
| PpuMI | RGGWCCY | 1 cut(s) | 326 |
| PshAI | GACNNNNGTC | 1 cut(s) | 804 |
| PsiI | TTATAA | 1 cut(s) | 39 |
| Psp124BI | GAGCTC | 1 cut(s) | 738 |
| Psp5II | RGGWCCY | 1 cut(s) | 326 |
| PspFI | CCCAGC | 1 cut(s) | 449 |
| PspN4I | GGNNCC | 3 cut(s) | 76, 327, 328 |
| PspPI | GGNCC | 3 cut(s) | 326, 622, 775 |
| PspPPI | RGGWCCY | 1 cut(s) | 326 |
| RsaI | GTAC | 1 cut(s) | 557 |
| RsaNI | GTAC | 1 cut(s) | 556 |
| SacI | GAGCTC | 1 cut(s) | 738 |
| SaqAI | TTAA | 2 cut(s) | 165, 474 |
| SatI | GCNGC | 2 cut(s) | 57, 114 |
| Sau3AI | GATC | 1 cut(s) | 684 |
| Sau96I | GGNCC | 3 cut(s) | 326, 622, 775 |
| ScaI | AGTACT | 1 cut(s) | 557 |
| SchI | GAGTC | 1 cut(s) | 628 |
| ScrFI | CCNGG | 1 cut(s) | 324 |
| SduI | GDGCHC | 2 cut(s) | 79, 738 |
| SetI | ASST | 5 cut(s) | 285, 451, 584, 624, 738 |
| SinI | GGWCC | 2 cut(s) | 326, 622 |
| SmlI | CTYRAG | 2 cut(s) | 473, 636 |
| SmoI | CTYRAG | 2 cut(s) | 473, 636 |
| SphI | GCATGC | 1 cut(s) | 113 |
| Sse9I | AATT | 3 cut(s) | 247, 576, 705 |
| SsiI | CCGC | 3 cut(s) | 56, 113, 739 |
| SspI | AATATT | 1 cut(s) | 208 |
| SspMI | CTAG | 1 cut(s) | 212 |
| SstI | GAGCTC | 1 cut(s) | 738 |
| StyD4I | CCNGG | 1 cut(s) | 322 |
| StyI | CCWWGG | 1 cut(s) | 17 |
| TaqI | TCGA | 1 cut(s) | 808 |
| TasI | AATT | 3 cut(s) | 247, 576, 705 |
| TatI | WGTACW | 1 cut(s) | 555 |
| TauI | GCSGC | 2 cut(s) | 59, 116 |
| TfiI | GAWTC | 2 cut(s) | 428, 814 |
| Tru1I | TTAA | 2 cut(s) | 165, 474 |
| Tru9I | TTAA | 2 cut(s) | 165, 474 |
| TscAI | CASTG | 3 cut(s) | 267, 699, 824 |
| TspDTI | ATGAA | 3 cut(s) | 113, 424, 508 |
| TspGWI | ACGGA | 1 cut(s) | 587 |
| TspRI | CASTG | 3 cut(s) | 267, 699, 824 |
| Vha464I | CTTAAG | 1 cut(s) | 473 |
| VpaK11BI | GGWCC | 2 cut(s) | 326, 622 |
| XbaI | TCTAGA | 1 cut(s) | 211 |
| XceI | RCATGY | 2 cut(s) | 109, 113 |
| XspI | CTAG | 1 cut(s) | 212 |
| ZrmI | AGTACT | 1 cut(s) | 557 |
| Zsp2I | ATGCAT | 2 cut(s) | 111, 225 |