ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2028 |
| AarI | CACCTGC | 1 cut(s) | 428 |
| Acc36I | ACCTGC | 1 cut(s) | 428 |
| AccB1I | GGYRCC | 2 cut(s) | 622, 2228 |
| AccI | GTMKAC | 1 cut(s) | 373 |
| AciI | CCGC | 4 cut(s) | 98, 152, 640, 1465 |
| AclI | AACGTT | 1 cut(s) | 2220 |
| AclWI | GGATC | 5 cut(s) | 644, 657, 1065, 1541, 1599 |
| AcsI | RAATTY | 5 cut(s) | 883, 1177, 1245, 1372, 1746 |
| AcuI | CTGAAG | 2 cut(s) | 1178, 2319 |
| AfaI | GTAC | 7 cut(s) | 989, 1030, 1406, 1738, 2132, 2251, 2649 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 632, 1461, 1623, 1917, 2149, 2201 |
| AflIII | ACRYGT | 1 cut(s) | 2246 |
| AhlI | ACTAGT | 1 cut(s) | 1025 |
| AjnI | CCWGG | 6 cut(s) | 79, 733, 1732, 1915, 2124, 2154 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1234, 1266, 1886, 1918 |
| Alw21I | GWGCWC | 3 cut(s) | 159, 760, 899 |
| Alw26I | GTCTC | 8 cut(s) | 81, 250, 981, 1850, 2126, 2131, 2377, 2408 |
| Alw44I | GTGCAC | 1 cut(s) | 155 |
| AlwI | GGATC | 5 cut(s) | 644, 657, 1065, 1541, 1599 |
| Ama87I | CYCGRG | 2 cut(s) | 630, 2621 |
| AoxI | GGCC | 9 cut(s) | 453, 714, 1277, 1826, 1908, 2152, 2171, 2392, 2617 |
| ApaLI | GTGCAC | 1 cut(s) | 155 |
| ApeKI | GCWGC | 5 cut(s) | 398, 874, 1960, 2015, 2512 |
| ApoI | RAATTY | 5 cut(s) | 883, 1177, 1245, 1372, 1746 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1703, 1735 |
| AseI | ATTAAT | 2 cut(s) | 195, 323 |
| AspS9I | GGNCC | 5 cut(s) | 922, 1719, 2152, 2172, 2617 |
| AsuC2I | CCSGG | 1 cut(s) | 2523 |
| AsuHPI | GGTGA | 8 cut(s) | 52, 452, 559, 651, 764, 1440, 1556, 2221 |
| AsuII | TTCGAA | 1 cut(s) | 296 |
| AsuNHI | GCTAGC | 2 cut(s) | 943, 1336 |
| AvaI | CYCGRG | 2 cut(s) | 630, 2621 |
| AvaII | GGWCC | 2 cut(s) | 922, 1719 |
| BaeGI | GKGCMC | 2 cut(s) | 159, 1507 |
| BamHI | GGATCC | 1 cut(s) | 649 |
| BanI | GGYRCC | 2 cut(s) | 622, 2228 |
| BanII | GRGCYC | 2 cut(s) | 760, 899 |
| BbsI | GAAGAC | 1 cut(s) | 2084 |
| Bbv12I | GWGCWC | 3 cut(s) | 159, 760, 899 |
| BbvI | GCAGC | 5 cut(s) | 410, 886, 1972, 2027, 2524 |
| BccI | CCATC | 6 cut(s) | 83, 746, 1453, 1517, 1663, 2219 |
| BceAI | ACGGC | 2 cut(s) | 1755, 1895 |
| BciT130I | CCWGG | 6 cut(s) | 81, 735, 1734, 1917, 2126, 2156 |
| BciVI | GTATCC | 2 cut(s) | 75, 1548 |
| BclI | TGATCA | 1 cut(s) | 1116 |
| BcnI | CCSGG | 1 cut(s) | 2523 |
| BcoDI | GTCTC | 8 cut(s) | 81, 250, 981, 1850, 2126, 2131, 2377, 2408 |
| BcuI | ACTAGT | 1 cut(s) | 1025 |
| BfaI | CTAG | 9 cut(s) | 944, 1026, 1337, 1401, 1482, 1560, 1944, 1950, 2601 |
| BfmI | CTRYAG | 3 cut(s) | 966, 1785, 2510 |
| BfuAI | ACCTGC | 1 cut(s) | 428 |
| BfuI | GTATCC | 2 cut(s) | 75, 1548 |
| BglII | AGATCT | 2 cut(s) | 1309, 1699 |
| BisI | GCNGC | 7 cut(s) | 98, 399, 641, 875, 1961, 2016, 2513 |
| BlsI | GCNGC | 7 cut(s) | 99, 400, 642, 876, 1962, 2017, 2514 |
| BmcAI | AGTACT | 1 cut(s) | 1030 |
| Bme1390I | CCNGG | 7 cut(s) | 81, 735, 1734, 1917, 2126, 2156, 2523 |
| Bme18I | GGWCC | 2 cut(s) | 922, 1719 |
| BmeT110I | CYCGRG | 2 cut(s) | 630, 2621 |
| BmgT120I | GGNCC | 5 cut(s) | 922, 1719, 2152, 2172, 2617 |
| BmiI | GGNNCC | 5 cut(s) | 624, 651, 1812, 2230, 2618 |
| BmrFI | CCNGG | 7 cut(s) | 81, 735, 1734, 1917, 2126, 2156, 2523 |
| BmrI | ACTGGG | 2 cut(s) | 620, 2262 |
| BmsI | GCATC | 4 cut(s) | 139, 875, 1555, 2508 |
| BmtI | GCTAGC | 2 cut(s) | 947, 1340 |
| BmuI | ACTGGG | 2 cut(s) | 620, 2262 |
| BpiI | GAAGAC | 1 cut(s) | 2084 |
| BplI | GAGNNNNNCTC | 3 cut(s) | 2357, 2389, 2651 |
| BpmI | CTGGAG | 4 cut(s) | 1372, 2108, 2385, 2613 |
| Bpu14I | TTCGAA | 1 cut(s) | 296 |
| BpuMI | CCSGG | 1 cut(s) | 2523 |
| BsaI | GGTCTC | 2 cut(s) | 250, 2408 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 38, 61, 68, 91 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 632, 1461, 1623, 1917, 2149, 2201 |
| Bse1I | ACTGG | 5 cut(s) | 90, 615, 948, 2257, 2402 |
| BseBI | CCWGG | 6 cut(s) | 81, 735, 1734, 1917, 2126, 2156 |
| BseGI | GGATG | 5 cut(s) | 94, 142, 1441, 1858, 2092 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 632, 1461, 1623, 1917, 2149, 2201 |
| BseMII | CTCAG | 5 cut(s) | 228, 347, 947, 1467, 2328 |
| BseNI | ACTGG | 5 cut(s) | 90, 615, 948, 2257, 2402 |
| BseRI | GAGGAG | 3 cut(s) | 50, 1676, 1679 |
| BseSI | GKGCMC | 2 cut(s) | 159, 1507 |
| BseXI | GCAGC | 5 cut(s) | 410, 886, 1972, 2027, 2524 |
| BsgI | GTGCAG | 1 cut(s) | 2220 |
| BshFI | GGCC | 9 cut(s) | 455, 716, 1279, 1828, 1910, 2154, 2173, 2394, 2619 |
| BshNI | GGYRCC | 2 cut(s) | 622, 2228 |
| BsiHKAI | GWGCWC | 3 cut(s) | 159, 760, 899 |
| BsiHKCI | CYCGRG | 2 cut(s) | 630, 2621 |
| BsiSI | CCGG | 1 cut(s) | 2522 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 632, 1461, 1623, 1917, 2149, 2201 |
| BsmAI | GTCTC | 8 cut(s) | 81, 250, 981, 1850, 2126, 2131, 2377, 2408 |
| BsmBI | CGTCTC | 1 cut(s) | 2126 |
| BsmI | GAATGC | 2 cut(s) | 99, 814 |
| BsnI | GGCC | 9 cut(s) | 455, 716, 1279, 1828, 1910, 2154, 2173, 2394, 2619 |
| Bso31I | GGTCTC | 2 cut(s) | 250, 2408 |
| BsoBI | CYCGRG | 2 cut(s) | 630, 2621 |
| Bsp119I | TTCGAA | 1 cut(s) | 296 |
| Bsp1286I | GDGCHC | 4 cut(s) | 159, 760, 899, 1507 |
| Bsp143I | GATC | 8 cut(s) | 649, 1057, 1116, 1189, 1309, 1546, 1591, 1699 |
| Bsp19I | CCATGG | 4 cut(s) | 762, 1550, 2082, 2143 |
| BspACI | CCGC | 4 cut(s) | 98, 152, 640, 1465 |
| BspANI | GGCC | 9 cut(s) | 455, 716, 1279, 1828, 1910, 2154, 2173, 2394, 2619 |
| BspCNI | CTCAG | 5 cut(s) | 229, 346, 946, 1468, 2327 |
| BspHI | TCATGA | 1 cut(s) | 979 |
| BspLI | GGNNCC | 5 cut(s) | 624, 651, 1812, 2230, 2618 |
| BspMAI | CTGCAG | 1 cut(s) | 2514 |
| BspMI | ACCTGC | 1 cut(s) | 428 |
| BspOI | GCTAGC | 2 cut(s) | 947, 1340 |
| BspPI | GGATC | 5 cut(s) | 644, 657, 1065, 1541, 1599 |
| BspT104I | TTCGAA | 1 cut(s) | 296 |
| BspT107I | GGYRCC | 2 cut(s) | 622, 2228 |
| BspTNI | GGTCTC | 2 cut(s) | 250, 2408 |
| BsrI | ACTGG | 5 cut(s) | 90, 615, 948, 2257, 2402 |
| BssMI | GATC | 8 cut(s) | 649, 1057, 1116, 1189, 1309, 1546, 1591, 1699 |
| Bst2UI | CCWGG | 6 cut(s) | 81, 735, 1734, 1917, 2126, 2156 |
| Bst4CI | ACNGT | 4 cut(s) | 663, 853, 926, 967 |
| Bst6I | CTCTTC | 1 cut(s) | 2338 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2518 |
| BstBI | TTCGAA | 1 cut(s) | 296 |
| BstC8I | GCNNGC | 4 cut(s) | 605, 945, 1102, 1338 |
| BstDEI | CTNAG | 7 cut(s) | 237, 333, 933, 1091, 1476, 2314, 2445 |
| BstDSI | CCRYGG | 4 cut(s) | 762, 1550, 2082, 2143 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 630 |
| BstF5I | GGATG | 5 cut(s) | 94, 142, 1441, 1858, 2092 |
| BstKTI | GATC | 8 cut(s) | 652, 1060, 1119, 1192, 1312, 1549, 1594, 1702 |
| BstMAI | GTCTC | 8 cut(s) | 81, 250, 981, 1850, 2126, 2131, 2377, 2408 |
| BstMBI | GATC | 8 cut(s) | 649, 1057, 1116, 1189, 1309, 1546, 1591, 1699 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1084, 1337, 1960, 2518, 2585 |
| BstNI | CCWGG | 6 cut(s) | 81, 735, 1734, 1917, 2126, 2156 |
| BstNSI | RCATGY | 2 cut(s) | 1319, 2250 |
| BstSCI | CCNGG | 7 cut(s) | 79, 733, 1732, 1915, 2124, 2154, 2521 |
| BstSFI | CTRYAG | 3 cut(s) | 966, 1785, 2510 |
| BstSLI | GKGCMC | 2 cut(s) | 159, 1507 |
| BstV1I | GCAGC | 5 cut(s) | 410, 886, 1972, 2027, 2524 |
| BstV2I | GAAGAC | 1 cut(s) | 2084 |
| BstX2I | RGATCY | 3 cut(s) | 649, 1309, 1699 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 955, 2563 |
| BstYI | RGATCY | 3 cut(s) | 649, 1309, 1699 |
| BsuI | GTATCC | 2 cut(s) | 75, 1548 |
| BsuRI | GGCC | 9 cut(s) | 455, 716, 1279, 1828, 1910, 2154, 2173, 2394, 2619 |
| BtgI | CCRYGG | 4 cut(s) | 762, 1550, 2082, 2143 |
| BtsCI | GGATG | 5 cut(s) | 94, 142, 1441, 1858, 2092 |
| BtsI | GCAGTG | 2 cut(s) | 569, 1929 |
| BtsIMutI | CAGTG | 3 cut(s) | 569, 608, 1929 |
| BveI | ACCTGC | 1 cut(s) | 428 |
| Cac8I | GCNNGC | 4 cut(s) | 605, 945, 1102, 1338 |
| CciI | TCATGA | 1 cut(s) | 979 |
| Cfr13I | GGNCC | 5 cut(s) | 922, 1719, 2152, 2172, 2617 |
| CseI | GACGC | 1 cut(s) | 1977 |
| Csp6I | GTAC | 7 cut(s) | 988, 1029, 1405, 1737, 2131, 2250, 2648 |
| CviQI | GTAC | 7 cut(s) | 988, 1029, 1405, 1737, 2131, 2250, 2648 |
| DdeI | CTNAG | 7 cut(s) | 237, 333, 933, 1091, 1476, 2314, 2445 |
| DpnI | GATC | 8 cut(s) | 651, 1059, 1118, 1191, 1311, 1548, 1593, 1701 |
| DpnII | GATC | 8 cut(s) | 649, 1057, 1116, 1189, 1309, 1546, 1591, 1699 |
| Eam1104I | CTCTTC | 1 cut(s) | 2338 |
| EarI | CTCTTC | 1 cut(s) | 2338 |
| EciI | GGCGGA | 1 cut(s) | 1480 |
| Ecl136II | GAGCTC | 2 cut(s) | 758, 897 |
| Eco24I | GRGCYC | 2 cut(s) | 760, 899 |
| Eco31I | GGTCTC | 2 cut(s) | 250, 2408 |
| Eco47I | GGWCC | 2 cut(s) | 922, 1719 |
| Eco53kI | GAGCTC | 2 cut(s) | 758, 897 |
| Eco57I | CTGAAG | 2 cut(s) | 1178, 2319 |
| Eco88I | CYCGRG | 2 cut(s) | 630, 2621 |
| EcoICRI | GAGCTC | 2 cut(s) | 758, 897 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 630 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2617 |
| EcoRI | GAATTC | 1 cut(s) | 1372 |
| EcoRII | CCWGG | 6 cut(s) | 79, 733, 1732, 1915, 2124, 2154 |
| EcoT38I | GRGCYC | 2 cut(s) | 760, 899 |
| Esp3I | CGTCTC | 1 cut(s) | 2126 |
| FauNDI | CATATG | 2 cut(s) | 1006, 1147 |
| FbaI | TGATCA | 1 cut(s) | 1116 |
| FblI | GTMKAC | 1 cut(s) | 373 |
| Fnu4HI | GCNGC | 7 cut(s) | 98, 399, 641, 875, 1961, 2016, 2513 |
| FokI | GGATG | 5 cut(s) | 101, 149, 1428, 1865, 2099 |
| FriOI | GRGCYC | 2 cut(s) | 760, 899 |
| Fsp4HI | GCNGC | 7 cut(s) | 98, 399, 641, 875, 1961, 2016, 2513 |
| FspBI | CTAG | 9 cut(s) | 944, 1026, 1337, 1401, 1482, 1560, 1944, 1950, 2601 |
| GluI | GCNGC | 7 cut(s) | 98, 399, 641, 875, 1961, 2016, 2513 |
| GsuI | CTGGAG | 4 cut(s) | 1372, 2108, 2385, 2613 |
| HaeIII | GGCC | 9 cut(s) | 455, 716, 1279, 1828, 1910, 2154, 2173, 2394, 2619 |
| HapII | CCGG | 1 cut(s) | 2522 |
| HgaI | GACGC | 1 cut(s) | 1977 |
| HpaII | CCGG | 1 cut(s) | 2522 |
| HphI | GGTGA | 8 cut(s) | 52, 452, 559, 651, 764, 1440, 1556, 2221 |
| Hpy166II | GTNNAC | 7 cut(s) | 157, 374, 922, 1722, 1778, 2092, 2664 |
| Hpy188I | TCNGA | 6 cut(s) | 336, 936, 1307, 1371, 1477, 2338 |
| Hpy188III | TCNNGA | 8 cut(s) | 236, 352, 630, 830, 980, 1046, 1412, 2276 |
| Hpy8I | GTNNAC | 7 cut(s) | 157, 374, 922, 1722, 1778, 2092, 2664 |
| HpyCH4III | ACNGT | 4 cut(s) | 663, 853, 926, 967 |
| HpyCH4IV | ACGT | 4 cut(s) | 905, 1507, 1867, 2220 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1084, 1337, 1960, 2518, 2585 |
| HpyF3I | CTNAG | 7 cut(s) | 237, 333, 933, 1091, 1476, 2314, 2445 |
| HpySE526I | ACGT | 4 cut(s) | 905, 1507, 1867, 2220 |
| Ksp22I | TGATCA | 1 cut(s) | 1116 |
| Kzo9I | GATC | 8 cut(s) | 649, 1057, 1116, 1189, 1309, 1546, 1591, 1699 |
| LmnI | GCTCC | 5 cut(s) | 520, 680, 755, 763, 1573 |
| Lsp1109I | GCAGC | 5 cut(s) | 410, 886, 1972, 2027, 2524 |
| LweI | GCATC | 4 cut(s) | 139, 875, 1555, 2508 |
| MaeI | CTAG | 9 cut(s) | 944, 1026, 1337, 1401, 1482, 1560, 1944, 1950, 2601 |
| MaeII | ACGT | 4 cut(s) | 905, 1507, 1867, 2220 |
| MaeIII | GTNAC | 4 cut(s) | 180, 729, 901, 961 |
| MalI | GATC | 8 cut(s) | 651, 1059, 1118, 1191, 1311, 1548, 1593, 1701 |
| MboI | GATC | 8 cut(s) | 649, 1057, 1116, 1189, 1309, 1546, 1591, 1699 |
| MboII | GAAGA | 9 cut(s) | 562, 564, 1184, 1445, 1932, 2089, 2224, 2325, 2589 |
| MfeI | CAATTG | 3 cut(s) | 261, 1771, 1860 |
| MflI | RGATCY | 3 cut(s) | 649, 1309, 1699 |
| MhlI | GDGCHC | 4 cut(s) | 159, 760, 899, 1507 |
| MlyI | GAGTC | 5 cut(s) | 248, 983, 1644, 2274, 2463 |
| MmeI | TCCRAC | 3 cut(s) | 136, 991, 1884 |
| MseI | TTAA | 9 cut(s) | 186, 195, 323, 768, 1169, 1323, 1635, 1655, 2217 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2087 |
| MspI | CCGG | 1 cut(s) | 2522 |
| MspR9I | CCNGG | 7 cut(s) | 81, 735, 1734, 1917, 2126, 2156, 2523 |
| MunI | CAATTG | 3 cut(s) | 261, 1771, 1860 |
| Mva1269I | GAATGC | 2 cut(s) | 99, 814 |
| MvaI | CCWGG | 6 cut(s) | 81, 735, 1734, 1917, 2126, 2156 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1084, 1337, 1960, 2518, 2585 |
| NciI | CCSGG | 1 cut(s) | 2523 |
| NcoI | CCATGG | 4 cut(s) | 762, 1550, 2082, 2143 |
| NdeI | CATATG | 2 cut(s) | 1006, 1147 |
| NdeII | GATC | 8 cut(s) | 649, 1057, 1116, 1189, 1309, 1546, 1591, 1699 |
| NheI | GCTAGC | 2 cut(s) | 943, 1336 |
| NlaIV | GGNNCC | 5 cut(s) | 624, 651, 1812, 2230, 2618 |
| NmeAIII | GCCGAG | 1 cut(s) | 742 |
| NspI | RCATGY | 2 cut(s) | 1319, 2250 |
| NspV | TTCGAA | 1 cut(s) | 296 |
| PaeR7I | CTCGAG | 2 cut(s) | 630, 2621 |
| PagI | TCATGA | 1 cut(s) | 979 |
| PaqCI | CACCTGC | 1 cut(s) | 428 |
| PciI | ACATGT | 1 cut(s) | 2246 |
| PctI | GAATGC | 2 cut(s) | 99, 814 |
| PfeI | GAWTC | 5 cut(s) | 217, 1302, 1613, 1822, 2420 |
| PfoI | TCCNGGA | 2 cut(s) | 79, 2124 |
| PkrI | GCNGC | 7 cut(s) | 99, 400, 642, 876, 1962, 2017, 2514 |
| PleI | GAGTC | 5 cut(s) | 247, 982, 1644, 2273, 2462 |
| PpsI | GAGTC | 5 cut(s) | 247, 982, 1644, 2273, 2462 |
| PscI | ACATGT | 1 cut(s) | 2246 |
| PshBI | ATTAAT | 2 cut(s) | 195, 323 |
| PsiI | TTATAA | 1 cut(s) | 2028 |
| Psp124BI | GAGCTC | 2 cut(s) | 760, 899 |
| Psp1406I | AACGTT | 1 cut(s) | 2220 |
| Psp6I | CCWGG | 6 cut(s) | 79, 733, 1732, 1915, 2124, 2154 |
| PspGI | CCWGG | 6 cut(s) | 79, 733, 1732, 1915, 2124, 2154 |
| PspN4I | GGNNCC | 5 cut(s) | 624, 651, 1812, 2230, 2618 |
| PspPI | GGNCC | 5 cut(s) | 922, 1719, 2152, 2172, 2617 |
| PspXI | VCTCGAGB | 1 cut(s) | 2621 |
| PstI | CTGCAG | 1 cut(s) | 2514 |
| PsuI | RGATCY | 3 cut(s) | 649, 1309, 1699 |
| RsaI | GTAC | 7 cut(s) | 989, 1030, 1406, 1738, 2132, 2251, 2649 |
| RsaNI | GTAC | 7 cut(s) | 988, 1029, 1405, 1737, 2131, 2250, 2648 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2087 |
| SacI | GAGCTC | 2 cut(s) | 760, 899 |
| SaqAI | TTAA | 9 cut(s) | 186, 195, 323, 768, 1169, 1323, 1635, 1655, 2217 |
| SatI | GCNGC | 7 cut(s) | 98, 399, 641, 875, 1961, 2016, 2513 |
| Sau3AI | GATC | 8 cut(s) | 649, 1057, 1116, 1189, 1309, 1546, 1591, 1699 |
| Sau96I | GGNCC | 5 cut(s) | 922, 1719, 2152, 2172, 2617 |
| ScaI | AGTACT | 1 cut(s) | 1030 |
| SchI | GAGTC | 5 cut(s) | 248, 983, 1644, 2274, 2463 |
| ScrFI | CCNGG | 7 cut(s) | 81, 735, 1734, 1917, 2126, 2156, 2523 |
| SduI | GDGCHC | 4 cut(s) | 159, 760, 899, 1507 |
| SfaNI | GCATC | 4 cut(s) | 139, 875, 1555, 2508 |
| SfcI | CTRYAG | 3 cut(s) | 966, 1785, 2510 |
| Sfr274I | CTCGAG | 2 cut(s) | 630, 2621 |
| SfuI | TTCGAA | 1 cut(s) | 296 |
| SinI | GGWCC | 2 cut(s) | 922, 1719 |
| SlaI | CTCGAG | 2 cut(s) | 630, 2621 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2087 |
| SmlI | CTYRAG | 2 cut(s) | 630, 2621 |
| SmoI | CTYRAG | 2 cut(s) | 630, 2621 |
| SpeI | ACTAGT | 1 cut(s) | 1025 |
| SsiI | CCGC | 4 cut(s) | 98, 152, 640, 1465 |
| SspMI | CTAG | 9 cut(s) | 944, 1026, 1337, 1401, 1482, 1560, 1944, 1950, 2601 |
| SstI | GAGCTC | 2 cut(s) | 760, 899 |
| StyD4I | CCNGG | 7 cut(s) | 79, 733, 1732, 1915, 2124, 2154, 2521 |
| TaaI | ACNGT | 4 cut(s) | 663, 853, 926, 967 |
| TaiI | ACGT | 4 cut(s) | 908, 1510, 1870, 2223 |
| TaqI | TCGA | 4 cut(s) | 296, 598, 631, 2622 |
| TaqII | GACCGA | 1 cut(s) | 2432 |
| TatI | WGTACW | 3 cut(s) | 1028, 2249, 2647 |
| TauI | GCSGC | 2 cut(s) | 100, 643 |
| TfiI | GAWTC | 5 cut(s) | 217, 1302, 1613, 1822, 2420 |
| Tru1I | TTAA | 9 cut(s) | 186, 195, 323, 768, 1169, 1323, 1635, 1655, 2217 |
| Tru9I | TTAA | 9 cut(s) | 186, 195, 323, 768, 1169, 1323, 1635, 1655, 2217 |
| TscAI | CASTG | 3 cut(s) | 569, 615, 1936 |
| TseI | GCWGC | 5 cut(s) | 398, 874, 1960, 2015, 2512 |
| TspDTI | ATGAA | 9 cut(s) | 17, 413, 576, 1238, 1248, 1365, 2426, 2464, 2495 |
| TspGWI | ACGGA | 1 cut(s) | 1875 |
| TspRI | CASTG | 3 cut(s) | 569, 615, 1936 |
| VneI | GTGCAC | 1 cut(s) | 155 |
| VpaK11BI | GGWCC | 2 cut(s) | 922, 1719 |
| VspI | ATTAAT | 2 cut(s) | 195, 323 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 630 |
| XapI | RAATTY | 5 cut(s) | 883, 1177, 1245, 1372, 1746 |
| XceI | RCATGY | 2 cut(s) | 1319, 2250 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2141, 2202 |
| XhoI | CTCGAG | 2 cut(s) | 630, 2621 |
| XmiI | GTMKAC | 1 cut(s) | 373 |
| XspI | CTAG | 9 cut(s) | 944, 1026, 1337, 1401, 1482, 1560, 1944, 1950, 2601 |
| ZrmI | AGTACT | 1 cut(s) | 1030 |