ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 715 |
| AcoI | YGGCCR | 1 cut(s) | 627 |
| AfaI | GTAC | 4 cut(s) | 594, 756, 847, 982 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 346, 521, 715 |
| AflII | CTTAAG | 1 cut(s) | 287 |
| AgsI | TTSAA | 2 cut(s) | 301, 603 |
| AjnI | CCWGG | 3 cut(s) | 503, 708, 838 |
| Alw21I | GWGCWC | 1 cut(s) | 436 |
| AoxI | GGCC | 2 cut(s) | 627, 819 |
| ApeKI | GCWGC | 2 cut(s) | 835, 881 |
| AspS9I | GGNCC | 3 cut(s) | 484, 719, 820 |
| AsuHPI | GGTGA | 2 cut(s) | 361, 465 |
| AvaII | GGWCC | 2 cut(s) | 484, 719 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 845, 878 |
| BalI | TGGCCA | 1 cut(s) | 629 |
| Bbv12I | GWGCWC | 1 cut(s) | 436 |
| BbvI | GCAGC | 2 cut(s) | 822, 868 |
| BccI | CCATC | 1 cut(s) | 619 |
| BceAI | ACGGC | 1 cut(s) | 324 |
| BciT130I | CCWGG | 3 cut(s) | 505, 710, 840 |
| BclI | TGATCA | 1 cut(s) | 640 |
| BfaI | CTAG | 8 cut(s) | 12, 126, 137, 674, 678, 731, 956, 972 |
| BfrI | CTTAAG | 1 cut(s) | 287 |
| BglII | AGATCT | 1 cut(s) | 128 |
| BisI | GCNGC | 2 cut(s) | 836, 882 |
| BlsI | GCNGC | 2 cut(s) | 837, 883 |
| BmcAI | AGTACT | 1 cut(s) | 847 |
| Bme1390I | CCNGG | 3 cut(s) | 505, 710, 840 |
| Bme18I | GGWCC | 2 cut(s) | 484, 719 |
| BmgT120I | GGNCC | 3 cut(s) | 484, 719, 820 |
| BmiI | GGNNCC | 2 cut(s) | 486, 720 |
| BmrFI | CCNGG | 3 cut(s) | 505, 710, 840 |
| BpuEI | CTTGAG | 2 cut(s) | 420, 645 |
| BsaAI | YACGTR | 1 cut(s) | 596 |
| BsaJI | CCNNGG | 2 cut(s) | 480, 709 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 346, 521, 715 |
| Bse1I | ACTGG | 1 cut(s) | 722 |
| Bse3DI | GCAATG | 1 cut(s) | 931 |
| BseBI | CCWGG | 3 cut(s) | 505, 710, 840 |
| BseDI | CCNNGG | 2 cut(s) | 480, 709 |
| BseGI | GGATG | 2 cut(s) | 630, 817 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 346, 521, 715 |
| BseMI | GCAATG | 1 cut(s) | 931 |
| BseMII | CTCAG | 1 cut(s) | 845 |
| BseNI | ACTGG | 1 cut(s) | 722 |
| BseRI | GAGGAG | 3 cut(s) | 7, 12, 974 |
| BseXI | GCAGC | 2 cut(s) | 822, 868 |
| BsgI | GTGCAG | 1 cut(s) | 600 |
| BshFI | GGCC | 2 cut(s) | 629, 821 |
| BsiHKAI | GWGCWC | 1 cut(s) | 436 |
| BslFI | GGGAC | 1 cut(s) | 470 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 346, 521, 715 |
| BsmFI | GGGAC | 1 cut(s) | 470 |
| BsnI | GGCC | 2 cut(s) | 629, 821 |
| Bsp1286I | GDGCHC | 1 cut(s) | 436 |
| Bsp143I | GATC | 3 cut(s) | 128, 416, 640 |
| BspANI | GGCC | 2 cut(s) | 629, 821 |
| BspCNI | CTCAG | 1 cut(s) | 844 |
| BspLI | GGNNCC | 2 cut(s) | 486, 720 |
| BspTI | CTTAAG | 1 cut(s) | 287 |
| BsrDI | GCAATG | 1 cut(s) | 931 |
| BsrI | ACTGG | 1 cut(s) | 722 |
| BssECI | CCNNGG | 2 cut(s) | 480, 709 |
| BssMI | GATC | 3 cut(s) | 128, 416, 640 |
| BssT1I | CCWWGG | 1 cut(s) | 480 |
| Bst2UI | CCWGG | 3 cut(s) | 505, 710, 840 |
| Bst4CI | ACNGT | 1 cut(s) | 357 |
| Bst6I | CTCTTC | 1 cut(s) | 207 |
| BstAFI | CTTAAG | 1 cut(s) | 287 |
| BstBAI | YACGTR | 1 cut(s) | 596 |
| BstC8I | GCNNGC | 4 cut(s) | 447, 501, 691, 695 |
| BstDEI | CTNAG | 2 cut(s) | 428, 831 |
| BstF5I | GGATG | 2 cut(s) | 630, 817 |
| BstKTI | GATC | 3 cut(s) | 131, 419, 643 |
| BstMBI | GATC | 3 cut(s) | 128, 416, 640 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 902 |
| BstNI | CCWGG | 3 cut(s) | 505, 710, 840 |
| BstNSI | RCATGY | 3 cut(s) | 449, 503, 544 |
| BstSCI | CCNGG | 3 cut(s) | 503, 708, 838 |
| BstV1I | GCAGC | 2 cut(s) | 822, 868 |
| BstX2I | RGATCY | 1 cut(s) | 128 |
| BstYI | RGATCY | 1 cut(s) | 128 |
| BsuRI | GGCC | 2 cut(s) | 629, 821 |
| BtsCI | GGATG | 2 cut(s) | 630, 817 |
| BtsIMutI | CAGTG | 1 cut(s) | 538 |
| Cac8I | GCNNGC | 4 cut(s) | 447, 501, 691, 695 |
| Cfr13I | GGNCC | 3 cut(s) | 484, 719, 820 |
| Csp6I | GTAC | 4 cut(s) | 593, 755, 846, 981 |
| CviAII | CATG | 3 cut(s) | 446, 500, 541 |
| CviQI | GTAC | 4 cut(s) | 593, 755, 846, 981 |
| DdeI | CTNAG | 2 cut(s) | 428, 831 |
| DpnI | GATC | 3 cut(s) | 130, 418, 642 |
| DpnII | GATC | 3 cut(s) | 128, 416, 640 |
| EaeI | YGGCCR | 1 cut(s) | 627 |
| Eam1104I | CTCTTC | 1 cut(s) | 207 |
| EarI | CTCTTC | 1 cut(s) | 207 |
| Eco130I | CCWWGG | 1 cut(s) | 480 |
| Eco47I | GGWCC | 2 cut(s) | 484, 719 |
| EcoO109I | RGGNCCY | 1 cut(s) | 484 |
| EcoRII | CCWGG | 3 cut(s) | 503, 708, 838 |
| EcoT14I | CCWWGG | 1 cut(s) | 480 |
| EcoT22I | ATGCAT | 1 cut(s) | 768 |
| ErhI | CCWWGG | 1 cut(s) | 480 |
| FaeI | CATG | 3 cut(s) | 449, 503, 544 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 72, 104, 147, 179 |
| FaqI | GGGAC | 1 cut(s) | 470 |
| FatI | CATG | 3 cut(s) | 445, 499, 540 |
| FbaI | TGATCA | 1 cut(s) | 640 |
| Fnu4HI | GCNGC | 2 cut(s) | 836, 882 |
| FokI | GGATG | 2 cut(s) | 637, 824 |
| Fsp4HI | GCNGC | 2 cut(s) | 836, 882 |
| FspBI | CTAG | 8 cut(s) | 12, 126, 137, 674, 678, 731, 956, 972 |
| GluI | GCNGC | 2 cut(s) | 836, 882 |
| HaeIII | GGCC | 2 cut(s) | 629, 821 |
| Hin1II | CATG | 3 cut(s) | 449, 503, 544 |
| HindIII | AAGCTT | 1 cut(s) | 102 |
| HinfI | GANTC | 5 cut(s) | 241, 599, 734, 740, 779 |
| HphI | GGTGA | 2 cut(s) | 361, 465 |
| Hpy188I | TCNGA | 2 cut(s) | 739, 797 |
| Hpy188III | TCNNGA | 6 cut(s) | 110, 704, 731, 866, 956, 972 |
| HpyAV | CCTTC | 2 cut(s) | 142, 525 |
| HpyCH4III | ACNGT | 1 cut(s) | 357 |
| HpyCH4IV | ACGT | 1 cut(s) | 595 |
| HpyCH4V | TGCA | 8 cut(s) | 66, 230, 540, 562, 581, 693, 766, 924 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 902 |
| HpyF3I | CTNAG | 2 cut(s) | 428, 831 |
| HpySE526I | ACGT | 1 cut(s) | 595 |
| Hsp92II | CATG | 3 cut(s) | 449, 503, 544 |
| Ksp22I | TGATCA | 1 cut(s) | 640 |
| Kzo9I | GATC | 3 cut(s) | 128, 416, 640 |
| LmnI | GCTCC | 4 cut(s) | 20, 160, 548, 798 |
| Lsp1109I | GCAGC | 2 cut(s) | 822, 868 |
| MaeI | CTAG | 8 cut(s) | 12, 126, 137, 674, 678, 731, 956, 972 |
| MaeII | ACGT | 1 cut(s) | 595 |
| MalI | GATC | 3 cut(s) | 130, 418, 642 |
| MboI | GATC | 3 cut(s) | 128, 416, 640 |
| MboII | GAAGA | 5 cut(s) | 61, 157, 194, 203, 449 |
| MflI | RGATCY | 1 cut(s) | 128 |
| MhlI | GDGCHC | 1 cut(s) | 436 |
| MlsI | TGGCCA | 1 cut(s) | 629 |
| MluCI | AATT | 4 cut(s) | 301, 317, 451, 585 |
| MluNI | TGGCCA | 1 cut(s) | 629 |
| MlyI | GAGTC | 2 cut(s) | 235, 734 |
| Mox20I | TGGCCA | 1 cut(s) | 629 |
| Mph1103I | ATGCAT | 1 cut(s) | 768 |
| MscI | TGGCCA | 1 cut(s) | 629 |
| MseI | TTAA | 3 cut(s) | 141, 288, 985 |
| MslI | CAYNNNNRTG | 1 cut(s) | 573 |
| Msp20I | TGGCCA | 1 cut(s) | 629 |
| MspA1I | CMGCKG | 1 cut(s) | 835 |
| MspCI | CTTAAG | 1 cut(s) | 287 |
| MspR9I | CCNGG | 3 cut(s) | 505, 710, 840 |
| MvaI | CCWGG | 3 cut(s) | 505, 710, 840 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 902 |
| NdeII | GATC | 3 cut(s) | 128, 416, 640 |
| NlaIII | CATG | 3 cut(s) | 449, 503, 544 |
| NlaIV | GGNNCC | 2 cut(s) | 486, 720 |
| NsiI | ATGCAT | 1 cut(s) | 768 |
| NspI | RCATGY | 3 cut(s) | 449, 503, 544 |
| PaeI | GCATGC | 2 cut(s) | 449, 503 |
| PfeI | GAWTC | 3 cut(s) | 599, 734, 779 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 715 |
| PkrI | GCNGC | 2 cut(s) | 837, 883 |
| PleI | GAGTC | 2 cut(s) | 235, 734 |
| PpsI | GAGTC | 2 cut(s) | 235, 734 |
| Ppu21I | YACGTR | 1 cut(s) | 596 |
| PpuMI | RGGWCCY | 1 cut(s) | 484 |
| Psp5II | RGGWCCY | 1 cut(s) | 484 |
| Psp6I | CCWGG | 3 cut(s) | 503, 708, 838 |
| PspGI | CCWGG | 3 cut(s) | 503, 708, 838 |
| PspN4I | GGNNCC | 2 cut(s) | 486, 720 |
| PspPI | GGNCC | 3 cut(s) | 484, 719, 820 |
| PspPPI | RGGWCCY | 1 cut(s) | 484 |
| PsuI | RGATCY | 1 cut(s) | 128 |
| PvuII | CAGCTG | 1 cut(s) | 835 |
| RsaI | GTAC | 4 cut(s) | 594, 756, 847, 982 |
| RsaNI | GTAC | 4 cut(s) | 593, 755, 846, 981 |
| RseI | CAYNNNNRTG | 1 cut(s) | 573 |
| SaqAI | TTAA | 3 cut(s) | 141, 288, 985 |
| SatI | GCNGC | 2 cut(s) | 836, 882 |
| Sau3AI | GATC | 3 cut(s) | 128, 416, 640 |
| Sau96I | GGNCC | 3 cut(s) | 484, 719, 820 |
| ScaI | AGTACT | 1 cut(s) | 847 |
| SchI | GAGTC | 2 cut(s) | 235, 734 |
| ScrFI | CCNGG | 3 cut(s) | 505, 710, 840 |
| SduI | GDGCHC | 1 cut(s) | 436 |
| SinI | GGWCC | 2 cut(s) | 484, 719 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 573 |
| SmlI | CTYRAG | 3 cut(s) | 287, 435, 660 |
| SmoI | CTYRAG | 3 cut(s) | 287, 435, 660 |
| SphI | GCATGC | 2 cut(s) | 449, 503 |
| Sse9I | AATT | 4 cut(s) | 301, 317, 451, 585 |
| SspI | AATATT | 1 cut(s) | 469 |
| SspMI | CTAG | 8 cut(s) | 12, 126, 137, 674, 678, 731, 956, 972 |
| StyD4I | CCNGG | 3 cut(s) | 503, 708, 838 |
| StyI | CCWWGG | 1 cut(s) | 480 |
| TaaI | ACNGT | 1 cut(s) | 357 |
| TaiI | ACGT | 1 cut(s) | 598 |
| TaqI | TCGA | 2 cut(s) | 415, 865 |
| TasI | AATT | 4 cut(s) | 301, 317, 451, 585 |
| TatI | WGTACW | 3 cut(s) | 754, 845, 980 |
| TfiI | GAWTC | 3 cut(s) | 599, 734, 779 |
| Tru1I | TTAA | 3 cut(s) | 141, 288, 985 |
| Tru9I | TTAA | 3 cut(s) | 141, 288, 985 |
| TscAI | CASTG | 1 cut(s) | 538 |
| TseI | GCWGC | 2 cut(s) | 835, 881 |
| TspDTI | ATGAA | 1 cut(s) | 194 |
| TspRI | CASTG | 1 cut(s) | 538 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 715 |
| Vha464I | CTTAAG | 1 cut(s) | 287 |
| VpaK11BI | GGWCC | 2 cut(s) | 484, 719 |
| XbaI | TCTAGA | 3 cut(s) | 730, 955, 971 |
| XceI | RCATGY | 3 cut(s) | 449, 503, 544 |
| XspI | CTAG | 8 cut(s) | 12, 126, 137, 674, 678, 731, 956, 972 |
| ZrmI | AGTACT | 1 cut(s) | 847 |
| Zsp2I | ATGCAT | 1 cut(s) | 768 |