Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 48 - 139 | 1.2e-16 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 89 |
| AclWI | GGATC | 4 cut(s) | 244, 318, 423, 436 |
| AdeI | CACNNNGTG | 1 cut(s) | 14 |
| AfaI | GTAC | 1 cut(s) | 397 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 307 |
| AgsI | TTSAA | 1 cut(s) | 341 |
| AluBI | AGCT | 4 cut(s) | 62, 68, 124, 263 |
| AluI | AGCT | 4 cut(s) | 62, 68, 124, 263 |
| AlwI | GGATC | 4 cut(s) | 244, 318, 423, 436 |
| Ama87I | CYCGRG | 1 cut(s) | 412 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 33 |
| AsuHPI | GGTGA | 1 cut(s) | 280 |
| AvaI | CYCGRG | 1 cut(s) | 412 |
| BamHI | GGATCC | 1 cut(s) | 428 |
| BfaI | CTAG | 2 cut(s) | 113, 317 |
| BfmI | CTRYAG | 1 cut(s) | 183 |
| BmeT110I | CYCGRG | 1 cut(s) | 412 |
| BmiI | GGNNCC | 1 cut(s) | 430 |
| BmsI | GCATC | 1 cut(s) | 329 |
| Bpu10I | CCTNAGC | 1 cut(s) | 264 |
| BpuEI | CTTGAG | 1 cut(s) | 146 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 307 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 307 |
| BseMII | CTCAG | 1 cut(s) | 434 |
| BsiHKCI | CYCGRG | 1 cut(s) | 412 |
| BslFI | GGGAC | 1 cut(s) | 67 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 307 |
| BsmFI | GGGAC | 1 cut(s) | 67 |
| BsoBI | CYCGRG | 1 cut(s) | 412 |
| Bsp1407I | TGTACA | 1 cut(s) | 395 |
| Bsp143I | GATC | 4 cut(s) | 38, 249, 310, 428 |
| BspCNI | CTCAG | 1 cut(s) | 435 |
| BspLI | GGNNCC | 1 cut(s) | 430 |
| BspPI | GGATC | 4 cut(s) | 244, 318, 423, 436 |
| BsrGI | TGTACA | 1 cut(s) | 395 |
| BssMI | GATC | 4 cut(s) | 38, 249, 310, 428 |
| Bst4CI | ACNGT | 2 cut(s) | 148, 404 |
| BstAUI | TGTACA | 1 cut(s) | 395 |
| BstC8I | GCNNGC | 1 cut(s) | 243 |
| BstDEI | CTNAG | 2 cut(s) | 264, 443 |
| BstEII | GGTNACC | 1 cut(s) | 268 |
| BstKTI | GATC | 4 cut(s) | 41, 252, 313, 431 |
| BstMBI | GATC | 4 cut(s) | 38, 249, 310, 428 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 74 |
| BstNSI | RCATGY | 1 cut(s) | 245 |
| BstPI | GGTNACC | 1 cut(s) | 268 |
| BstSFI | CTRYAG | 1 cut(s) | 183 |
| BstX2I | RGATCY | 2 cut(s) | 249, 428 |
| BstYI | RGATCY | 2 cut(s) | 249, 428 |
| Cac8I | GCNNGC | 1 cut(s) | 243 |
| Csp6I | GTAC | 1 cut(s) | 396 |
| CviAII | CATG | 2 cut(s) | 23, 242 |
| CviJI | RGCY | 5 cut(s) | 62, 68, 112, 124, 263 |
| CviKI_1 | RGCY | 5 cut(s) | 62, 68, 112, 124, 263 |
| CviQI | GTAC | 1 cut(s) | 396 |
| DdeI | CTNAG | 2 cut(s) | 264, 443 |
| DpnI | GATC | 4 cut(s) | 40, 251, 312, 430 |
| DpnII | GATC | 4 cut(s) | 38, 249, 310, 428 |
| DraIII | CACNNNGTG | 1 cut(s) | 14 |
| Eco88I | CYCGRG | 1 cut(s) | 412 |
| Eco91I | GGTNACC | 1 cut(s) | 268 |
| EcoO65I | GGTNACC | 1 cut(s) | 268 |
| FaeI | CATG | 2 cut(s) | 26, 245 |
| FaiI | YATR | 9 cut(s) | 24, 134, 185, 243, 286, 296, 361, 450, 463 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 57, 89 |
| FaqI | GGGAC | 1 cut(s) | 67 |
| FatI | CATG | 2 cut(s) | 22, 241 |
| FblI | GTMKAC | 1 cut(s) | 89 |
| FspBI | CTAG | 2 cut(s) | 113, 317 |
| Hin1II | CATG | 2 cut(s) | 26, 245 |
| HindIII | AAGCTT | 1 cut(s) | 122 |
| HinfI | GANTC | 1 cut(s) | 341 |
| HphI | GGTGA | 1 cut(s) | 280 |
| Hpy166II | GTNNAC | 2 cut(s) | 90, 396 |
| Hpy188I | TCNGA | 2 cut(s) | 291, 336 |
| Hpy8I | GTNNAC | 2 cut(s) | 90, 396 |
| HpyCH4III | ACNGT | 2 cut(s) | 148, 404 |
| HpyCH4V | TGCA | 1 cut(s) | 77 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 74 |
| HpyF3I | CTNAG | 2 cut(s) | 264, 443 |
| Hsp92II | CATG | 2 cut(s) | 26, 245 |
| Kzo9I | GATC | 4 cut(s) | 38, 249, 310, 428 |
| LweI | GCATC | 1 cut(s) | 329 |
| MaeI | CTAG | 2 cut(s) | 113, 317 |
| MaeIII | GTNAC | 2 cut(s) | 211, 268 |
| MalI | GATC | 4 cut(s) | 40, 251, 312, 430 |
| MboI | GATC | 4 cut(s) | 38, 249, 310, 428 |
| MfeI | CAATTG | 1 cut(s) | 99 |
| MflI | RGATCY | 2 cut(s) | 249, 428 |
| MluCI | AATT | 5 cut(s) | 78, 99, 139, 178, 433 |
| MmeI | TCCRAC | 1 cut(s) | 406 |
| MnlI | CCTC | 4 cut(s) | 19, 183, 408, 438 |
| MroXI | GAANNNNTTC | 1 cut(s) | 33 |
| MseI | TTAA | 3 cut(s) | 48, 150, 437 |
| MunI | CAATTG | 1 cut(s) | 99 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 74 |
| NdeII | GATC | 4 cut(s) | 38, 249, 310, 428 |
| NlaIII | CATG | 2 cut(s) | 26, 245 |
| NlaIV | GGNNCC | 1 cut(s) | 430 |
| NmuCI | GTSAC | 1 cut(s) | 268 |
| NspI | RCATGY | 1 cut(s) | 245 |
| PaeI | GCATGC | 1 cut(s) | 245 |
| PaeR7I | CTCGAG | 1 cut(s) | 412 |
| PdmI | GAANNNNTTC | 1 cut(s) | 33 |
| PfeI | GAWTC | 1 cut(s) | 341 |
| PspEI | GGTNACC | 1 cut(s) | 268 |
| PspN4I | GGNNCC | 1 cut(s) | 430 |
| PspXI | VCTCGAGB | 1 cut(s) | 412 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 388, 420 |
| PsuI | RGATCY | 2 cut(s) | 249, 428 |
| RsaI | GTAC | 1 cut(s) | 397 |
| RsaNI | GTAC | 1 cut(s) | 396 |
| SaqAI | TTAA | 3 cut(s) | 48, 150, 437 |
| Sau3AI | GATC | 4 cut(s) | 38, 249, 310, 428 |
| SetI | ASST | 7 cut(s) | 16, 64, 70, 126, 194, 265, 270 |
| SfaNI | GCATC | 1 cut(s) | 329 |
| SfcI | CTRYAG | 1 cut(s) | 183 |
| Sfr274I | CTCGAG | 1 cut(s) | 412 |
| SlaI | CTCGAG | 1 cut(s) | 412 |
| SmlI | CTYRAG | 2 cut(s) | 125, 412 |
| SmoI | CTYRAG | 2 cut(s) | 125, 412 |
| SphI | GCATGC | 1 cut(s) | 245 |
| Sse9I | AATT | 5 cut(s) | 78, 99, 139, 178, 433 |
| SspMI | CTAG | 2 cut(s) | 113, 317 |
| TaaI | ACNGT | 2 cut(s) | 148, 404 |
| TaqI | TCGA | 2 cut(s) | 37, 413 |
| TasI | AATT | 5 cut(s) | 78, 99, 139, 178, 433 |
| TatI | WGTACW | 1 cut(s) | 395 |
| TfiI | GAWTC | 1 cut(s) | 341 |
| Tru1I | TTAA | 3 cut(s) | 48, 150, 437 |
| Tru9I | TTAA | 3 cut(s) | 48, 150, 437 |
| TseFI | GTSAC | 1 cut(s) | 268 |
| Tsp45I | GTSAC | 1 cut(s) | 268 |
| TspDTI | ATGAA | 2 cut(s) | 17, 390 |
| XceI | RCATGY | 1 cut(s) | 245 |
| XhoI | CTCGAG | 1 cut(s) | 412 |
| XmiI | GTMKAC | 1 cut(s) | 89 |
| XmnI | GAANNNNTTC | 1 cut(s) | 33 |
| XspI | CTAG | 2 cut(s) | 113, 317 |