Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 2 - 69 | 6.2e-10 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 362 |
| AcuI | CTGAAG | 1 cut(s) | 267 |
| AfaI | GTAC | 1 cut(s) | 401 |
| AflIII | ACRYGT | 1 cut(s) | 433 |
| AgsI | TTSAA | 3 cut(s) | 52, 130, 310 |
| AluBI | AGCT | 4 cut(s) | 76, 200, 224, 405 |
| AluI | AGCT | 4 cut(s) | 76, 200, 224, 405 |
| Alw26I | GTCTC | 2 cut(s) | 26, 352 |
| AlwI | GGATC | 1 cut(s) | 362 |
| ApeKI | GCWGC | 4 cut(s) | 76, 182, 197, 206 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 25, 57 |
| AspS9I | GGNCC | 1 cut(s) | 112 |
| AsuHPI | GGTGA | 1 cut(s) | 148 |
| AvaII | GGWCC | 1 cut(s) | 112 |
| BbsI | GAAGAC | 1 cut(s) | 298 |
| BbvI | GCAGC | 4 cut(s) | 63, 169, 193, 209 |
| BclI | TGATCA | 1 cut(s) | 217 |
| BcoDI | GTCTC | 2 cut(s) | 26, 352 |
| BfaI | CTAG | 1 cut(s) | 162 |
| BfmI | CTRYAG | 1 cut(s) | 207 |
| BisI | GCNGC | 4 cut(s) | 77, 183, 198, 207 |
| BlsI | GCNGC | 4 cut(s) | 78, 184, 199, 208 |
| Bme18I | GGWCC | 1 cut(s) | 112 |
| BmgT120I | GGNCC | 1 cut(s) | 112 |
| BpiI | GAAGAC | 1 cut(s) | 298 |
| BpuEI | CTTGAG | 1 cut(s) | 319 |
| BsaAI | YACGTR | 1 cut(s) | 399 |
| BsaBI | GATNNNNATC | 1 cut(s) | 216 |
| BsaJI | CCNNGG | 1 cut(s) | 115 |
| Bse1I | ACTGG | 1 cut(s) | 20 |
| Bse8I | GATNNNNATC | 1 cut(s) | 216 |
| BseDI | CCNNGG | 1 cut(s) | 115 |
| BseJI | GATNNNNATC | 1 cut(s) | 216 |
| BseNI | ACTGG | 1 cut(s) | 20 |
| BseRI | GAGGAG | 1 cut(s) | 86 |
| BseXI | GCAGC | 4 cut(s) | 63, 169, 193, 209 |
| BsgI | GTGCAG | 1 cut(s) | 168 |
| BsmAI | GTCTC | 2 cut(s) | 26, 352 |
| Bsp143I | GATC | 3 cut(s) | 217, 294, 367 |
| BspMAI | CTGCAG | 1 cut(s) | 211 |
| BspPI | GGATC | 1 cut(s) | 362 |
| BsrI | ACTGG | 1 cut(s) | 20 |
| BssECI | CCNNGG | 1 cut(s) | 115 |
| BssMI | GATC | 3 cut(s) | 217, 294, 367 |
| Bst6I | CTCTTC | 1 cut(s) | 160 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 203 |
| BstBAI | YACGTR | 1 cut(s) | 399 |
| BstC8I | GCNNGC | 1 cut(s) | 236 |
| BstKTI | GATC | 3 cut(s) | 220, 297, 370 |
| BstMAI | GTCTC | 2 cut(s) | 26, 352 |
| BstMBI | GATC | 3 cut(s) | 217, 294, 367 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 179, 203, 206 |
| BstNSI | RCATGY | 2 cut(s) | 384, 437 |
| BstSFI | CTRYAG | 1 cut(s) | 207 |
| BstV1I | GCAGC | 4 cut(s) | 63, 169, 193, 209 |
| BstV2I | GAAGAC | 1 cut(s) | 298 |
| Cac8I | GCNNGC | 1 cut(s) | 236 |
| Cfr13I | GGNCC | 1 cut(s) | 112 |
| Csp6I | GTAC | 1 cut(s) | 400 |
| CviAII | CATG | 9 cut(s) | 8, 158, 178, 203, 242, 326, 357, 381, 434 |
| CviJI | RGCY | 6 cut(s) | 76, 182, 200, 224, 238, 405 |
| CviKI_1 | RGCY | 6 cut(s) | 76, 182, 200, 224, 238, 405 |
| CviQI | GTAC | 1 cut(s) | 400 |
| DpnI | GATC | 3 cut(s) | 219, 296, 369 |
| DpnII | GATC | 3 cut(s) | 217, 294, 367 |
| Eam1104I | CTCTTC | 1 cut(s) | 160 |
| EarI | CTCTTC | 1 cut(s) | 160 |
| Eco47I | GGWCC | 1 cut(s) | 112 |
| Eco57I | CTGAAG | 1 cut(s) | 267 |
| EcoO109I | RGGNCCY | 1 cut(s) | 112 |
| FaeI | CATG | 9 cut(s) | 11, 161, 181, 206, 245, 329, 360, 384, 437 |
| FatI | CATG | 9 cut(s) | 7, 157, 177, 202, 241, 325, 356, 380, 433 |
| FbaI | TGATCA | 1 cut(s) | 217 |
| Fnu4HI | GCNGC | 4 cut(s) | 77, 183, 198, 207 |
| Fsp4HI | GCNGC | 4 cut(s) | 77, 183, 198, 207 |
| FspBI | CTAG | 1 cut(s) | 162 |
| GluI | GCNGC | 4 cut(s) | 77, 183, 198, 207 |
| Hin1II | CATG | 9 cut(s) | 11, 161, 181, 206, 245, 329, 360, 384, 437 |
| HindIII | AAGCTT | 1 cut(s) | 222 |
| HinfI | GANTC | 1 cut(s) | 337 |
| HphI | GGTGA | 1 cut(s) | 148 |
| Hpy166II | GTNNAC | 1 cut(s) | 139 |
| Hpy188I | TCNGA | 1 cut(s) | 119 |
| Hpy188III | TCNNGA | 3 cut(s) | 68, 298, 424 |
| Hpy8I | GTNNAC | 1 cut(s) | 139 |
| HpyAV | CCTTC | 1 cut(s) | 93 |
| HpyCH4IV | ACGT | 2 cut(s) | 280, 398 |
| HpyCH4V | TGCA | 5 cut(s) | 79, 185, 209, 234, 285 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 179, 203, 206 |
| HpySE526I | ACGT | 2 cut(s) | 280, 398 |
| Hsp92II | CATG | 9 cut(s) | 11, 161, 181, 206, 245, 329, 360, 384, 437 |
| Ksp22I | TGATCA | 1 cut(s) | 217 |
| Kzo9I | GATC | 3 cut(s) | 217, 294, 367 |
| LmnI | GCTCC | 1 cut(s) | 73 |
| LpnPI | CCDG | 2 cut(s) | 33, 53 |
| Lsp1109I | GCAGC | 4 cut(s) | 63, 169, 193, 209 |
| MaeI | CTAG | 1 cut(s) | 162 |
| MaeII | ACGT | 2 cut(s) | 280, 398 |
| MalI | GATC | 3 cut(s) | 219, 296, 369 |
| MboI | GATC | 3 cut(s) | 217, 294, 367 |
| MboII | GAAGA | 2 cut(s) | 177, 298 |
| MluCI | AATT | 4 cut(s) | 24, 82, 150, 191 |
| MnlI | CCTC | 5 cut(s) | 64, 103, 125, 127, 163 |
| MseI | TTAA | 2 cut(s) | 386, 439 |
| MslI | CAYNNNNRTG | 1 cut(s) | 324 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 179, 203, 206 |
| NdeII | GATC | 3 cut(s) | 217, 294, 367 |
| NlaIII | CATG | 9 cut(s) | 11, 161, 181, 206, 245, 329, 360, 384, 437 |
| NspI | RCATGY | 2 cut(s) | 384, 437 |
| PciI | ACATGT | 1 cut(s) | 433 |
| PfeI | GAWTC | 1 cut(s) | 337 |
| PkrI | GCNGC | 4 cut(s) | 78, 184, 199, 208 |
| Ppu21I | YACGTR | 1 cut(s) | 399 |
| PpuMI | RGGWCCY | 1 cut(s) | 112 |
| PscI | ACATGT | 1 cut(s) | 433 |
| Psp5II | RGGWCCY | 1 cut(s) | 112 |
| PspPI | GGNCC | 1 cut(s) | 112 |
| PspPPI | RGGWCCY | 1 cut(s) | 112 |
| PstI | CTGCAG | 1 cut(s) | 211 |
| RsaI | GTAC | 1 cut(s) | 401 |
| RsaNI | GTAC | 1 cut(s) | 400 |
| RseI | CAYNNNNRTG | 1 cut(s) | 324 |
| SaqAI | TTAA | 2 cut(s) | 386, 439 |
| SatI | GCNGC | 4 cut(s) | 77, 183, 198, 207 |
| Sau3AI | GATC | 3 cut(s) | 217, 294, 367 |
| Sau96I | GGNCC | 1 cut(s) | 112 |
| SetI | ASST | 9 cut(s) | 78, 104, 117, 138, 202, 226, 283, 401, 407 |
| SfcI | CTRYAG | 1 cut(s) | 207 |
| SinI | GGWCC | 1 cut(s) | 112 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 324 |
| SmlI | CTYRAG | 1 cut(s) | 298 |
| SmoI | CTYRAG | 1 cut(s) | 298 |
| Sse9I | AATT | 4 cut(s) | 24, 82, 150, 191 |
| SspI | AATATT | 1 cut(s) | 125 |
| SspMI | CTAG | 1 cut(s) | 162 |
| TaiI | ACGT | 2 cut(s) | 283, 401 |
| TaqI | TCGA | 2 cut(s) | 335, 423 |
| TasI | AATT | 4 cut(s) | 24, 82, 150, 191 |
| TfiI | GAWTC | 1 cut(s) | 337 |
| Tru1I | TTAA | 2 cut(s) | 386, 439 |
| Tru9I | TTAA | 2 cut(s) | 386, 439 |
| TseI | GCWGC | 4 cut(s) | 76, 182, 197, 206 |
| TspDTI | ATGAA | 3 cut(s) | 146, 308, 397 |
| VpaK11BI | GGWCC | 1 cut(s) | 112 |
| XceI | RCATGY | 2 cut(s) | 384, 437 |
| XspI | CTAG | 1 cut(s) | 162 |