ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 753, 952 |
| AccII | CGCG | 1 cut(s) | 57 |
| AccIII | TCCGGA | 1 cut(s) | 811 |
| AciI | CCGC | 2 cut(s) | 333, 379 |
| AclI | AACGTT | 1 cut(s) | 387 |
| AclWI | GGATC | 8 cut(s) | 12, 602, 710, 723, 982, 1008, 1021, 1177 |
| AcsI | RAATTY | 3 cut(s) | 203, 841, 1113 |
| AfaI | GTAC | 4 cut(s) | 1067, 1129, 1136, 1335 |
| AfeI | AGCGCT | 1 cut(s) | 255 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1470 |
| AjnI | CCWGG | 1 cut(s) | 907 |
| AluBI | AGCT | 8 cut(s) | 327, 409, 553, 890, 1104, 1255, 1290, 1457 |
| AluI | AGCT | 8 cut(s) | 327, 409, 553, 890, 1104, 1255, 1290, 1457 |
| Alw21I | GWGCWC | 1 cut(s) | 1305 |
| Alw26I | GTCTC | 4 cut(s) | 56, 351, 898, 1102 |
| AlwI | GGATC | 8 cut(s) | 12, 602, 710, 723, 982, 1008, 1021, 1177 |
| Ama87I | CYCGRG | 1 cut(s) | 1298 |
| Aor13HI | TCCGGA | 1 cut(s) | 811 |
| Aor51HI | AGCGCT | 1 cut(s) | 255 |
| ApoI | RAATTY | 3 cut(s) | 203, 841, 1113 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1205, 1237 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 363 |
| AspLEI | GCGC | 2 cut(s) | 59, 256 |
| AsuHPI | GGTGA | 3 cut(s) | 845, 1332, 1339 |
| AvaI | CYCGRG | 1 cut(s) | 1298 |
| BamHI | GGATCC | 2 cut(s) | 715, 1013 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1444, 1476 |
| BauI | CACGAG | 1 cut(s) | 223 |
| Bbv12I | GWGCWC | 1 cut(s) | 1305 |
| BccI | CCATC | 2 cut(s) | 266, 585 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 296, 330 |
| BciT130I | CCWGG | 1 cut(s) | 909 |
| BcoDI | GTCTC | 4 cut(s) | 56, 351, 898, 1102 |
| BfaI | CTAG | 3 cut(s) | 758, 1101, 1353 |
| BfoI | RGCGCY | 1 cut(s) | 257 |
| BmcAI | AGTACT | 1 cut(s) | 1129 |
| Bme1390I | CCNGG | 1 cut(s) | 909 |
| BmeT110I | CYCGRG | 1 cut(s) | 1298 |
| BmiI | GGNNCC | 3 cut(s) | 503, 717, 1015 |
| BmrFI | CCNGG | 1 cut(s) | 909 |
| BmrI | ACTGGG | 1 cut(s) | 778 |
| BmsI | GCATC | 3 cut(s) | 158, 709, 741 |
| BmuI | ACTGGG | 1 cut(s) | 778 |
| BpmI | CTGGAG | 2 cut(s) | 930, 1256 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1174 |
| BsaI | GGTCTC | 3 cut(s) | 56, 898, 1102 |
| BsaJI | CCNNGG | 5 cut(s) | 66, 237, 519, 862, 1165 |
| BsaWI | WCCGGW | 1 cut(s) | 811 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1470 |
| Bse1I | ACTGG | 3 cut(s) | 753, 773, 1239 |
| Bse3DI | GCAATG | 3 cut(s) | 374, 376, 1098 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1174 |
| BseAI | TCCGGA | 1 cut(s) | 811 |
| BseBI | CCWGG | 1 cut(s) | 909 |
| BseDI | CCNNGG | 5 cut(s) | 66, 237, 519, 862, 1165 |
| BseGI | GGATG | 5 cut(s) | 277, 301, 580, 599, 700 |
| BseJI | GATNNNNATC | 1 cut(s) | 1174 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1470 |
| BseMI | GCAATG | 3 cut(s) | 374, 376, 1098 |
| BseMII | CTCAG | 5 cut(s) | 51, 742, 893, 927, 1411 |
| BseNI | ACTGG | 3 cut(s) | 753, 773, 1239 |
| BseRI | GAGGAG | 3 cut(s) | 508, 998, 1253 |
| Bsh1236I | CGCG | 1 cut(s) | 57 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1305 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1298 |
| BsiSI | CCGG | 2 cut(s) | 812, 1088 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1470 |
| BsmAI | GTCTC | 4 cut(s) | 56, 351, 898, 1102 |
| BsmI | GAATGC | 2 cut(s) | 268, 548 |
| Bso31I | GGTCTC | 3 cut(s) | 56, 898, 1102 |
| BsoBI | CYCGRG | 1 cut(s) | 1298 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1305 |
| Bsp13I | TCCGGA | 1 cut(s) | 811 |
| Bsp1407I | TGTACA | 2 cut(s) | 1134, 1333 |
| Bsp143I | GATC | 8 cut(s) | 4, 594, 715, 892, 987, 1013, 1169, 1417 |
| Bsp19I | CCATGG | 1 cut(s) | 66 |
| BspACI | CCGC | 2 cut(s) | 333, 379 |
| BspCNI | CTCAG | 5 cut(s) | 52, 741, 894, 928, 1410 |
| BspEI | TCCGGA | 1 cut(s) | 811 |
| BspFNI | CGCG | 1 cut(s) | 57 |
| BspHI | TCATGA | 1 cut(s) | 279 |
| BspLI | GGNNCC | 3 cut(s) | 503, 717, 1015 |
| BspPI | GGATC | 8 cut(s) | 12, 602, 710, 723, 982, 1008, 1021, 1177 |
| BspQI | GCTCTTC | 1 cut(s) | 1447 |
| BspTNI | GGTCTC | 3 cut(s) | 56, 898, 1102 |
| BsrDI | GCAATG | 3 cut(s) | 374, 376, 1098 |
| BsrGI | TGTACA | 2 cut(s) | 1134, 1333 |
| BsrI | ACTGG | 3 cut(s) | 753, 773, 1239 |
| BssECI | CCNNGG | 5 cut(s) | 66, 237, 519, 862, 1165 |
| BssMI | GATC | 8 cut(s) | 4, 594, 715, 892, 987, 1013, 1169, 1417 |
| BssNAI | GTATAC | 1 cut(s) | 953 |
| BssSI | CACGAG | 1 cut(s) | 223 |
| BssT1I | CCWWGG | 4 cut(s) | 66, 237, 862, 1165 |
| Bst1107I | GTATAC | 1 cut(s) | 953 |
| Bst2BI | CACGAG | 1 cut(s) | 223 |
| Bst2UI | CCWGG | 1 cut(s) | 909 |
| Bst4CI | ACNGT | 1 cut(s) | 98 |
| Bst6I | CTCTTC | 1 cut(s) | 1447 |
| BstAUI | TGTACA | 2 cut(s) | 1134, 1333 |
| BstC8I | GCNNGC | 1 cut(s) | 1288 |
| BstDEI | CTNAG | 5 cut(s) | 60, 728, 902, 936, 1397 |
| BstDSI | CCRYGG | 1 cut(s) | 66 |
| BstEII | GGTNACC | 1 cut(s) | 1243 |
| BstF5I | GGATG | 5 cut(s) | 277, 301, 580, 599, 700 |
| BstFNI | CGCG | 1 cut(s) | 57 |
| BstH2I | RGCGCY | 1 cut(s) | 257 |
| BstHHI | GCGC | 2 cut(s) | 59, 256 |
| BstKTI | GATC | 8 cut(s) | 7, 597, 718, 895, 990, 1016, 1172, 1420 |
| BstMAI | GTCTC | 4 cut(s) | 56, 351, 898, 1102 |
| BstMBI | GATC | 8 cut(s) | 4, 594, 715, 892, 987, 1013, 1169, 1417 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 530 |
| BstNI | CCWGG | 1 cut(s) | 909 |
| BstNSI | RCATGY | 3 cut(s) | 931, 1061, 1072 |
| BstPI | GGTNACC | 1 cut(s) | 1243 |
| BstSCI | CCNGG | 1 cut(s) | 907 |
| BstUI | CGCG | 1 cut(s) | 57 |
| BstX2I | RGATCY | 5 cut(s) | 594, 715, 987, 1013, 1169 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 863 |
| BstYI | RGATCY | 5 cut(s) | 594, 715, 987, 1013, 1169 |
| BstZ17I | GTATAC | 1 cut(s) | 953 |
| BtgI | CCRYGG | 1 cut(s) | 66 |
| BtsCI | GGATG | 5 cut(s) | 277, 301, 580, 599, 700 |
| BtsIMutI | CAGTG | 1 cut(s) | 719 |
| Cac8I | GCNNGC | 1 cut(s) | 1288 |
| CciI | TCATGA | 1 cut(s) | 279 |
| CfoI | GCGC | 2 cut(s) | 59, 256 |
| Csp6I | GTAC | 4 cut(s) | 1066, 1128, 1135, 1334 |
| CviAII | CATG | 6 cut(s) | 67, 280, 566, 928, 1058, 1069 |
| CviQI | GTAC | 4 cut(s) | 1066, 1128, 1135, 1334 |
| DdeI | CTNAG | 5 cut(s) | 60, 728, 902, 936, 1397 |
| DpnI | GATC | 8 cut(s) | 6, 596, 717, 894, 989, 1015, 1171, 1419 |
| DpnII | GATC | 8 cut(s) | 4, 594, 715, 892, 987, 1013, 1169, 1417 |
| Eam1104I | CTCTTC | 1 cut(s) | 1447 |
| EarI | CTCTTC | 1 cut(s) | 1447 |
| Eco130I | CCWWGG | 4 cut(s) | 66, 237, 862, 1165 |
| Eco31I | GGTCTC | 3 cut(s) | 56, 898, 1102 |
| Eco47III | AGCGCT | 1 cut(s) | 255 |
| Eco88I | CYCGRG | 1 cut(s) | 1298 |
| Eco91I | GGTNACC | 1 cut(s) | 1243 |
| EcoO65I | GGTNACC | 1 cut(s) | 1243 |
| EcoRI | GAATTC | 2 cut(s) | 841, 1113 |
| EcoRII | CCWGG | 1 cut(s) | 907 |
| EcoT14I | CCWWGG | 4 cut(s) | 66, 237, 862, 1165 |
| EcoT22I | ATGCAT | 2 cut(s) | 376, 1059 |
| ErhI | CCWWGG | 4 cut(s) | 66, 237, 862, 1165 |
| FaeI | CATG | 6 cut(s) | 70, 283, 569, 931, 1061, 1072 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 661, 693, 879, 911 |
| FatI | CATG | 6 cut(s) | 66, 279, 565, 927, 1057, 1068 |
| FblI | GTMKAC | 2 cut(s) | 753, 952 |
| FokI | GGATG | 5 cut(s) | 284, 308, 586, 587, 687 |
| FspBI | CTAG | 3 cut(s) | 758, 1101, 1353 |
| GlaI | GCGC | 2 cut(s) | 58, 255 |
| GsuI | CTGGAG | 2 cut(s) | 930, 1256 |
| HaeII | RGCGCY | 1 cut(s) | 257 |
| HapII | CCGG | 2 cut(s) | 812, 1088 |
| HhaI | GCGC | 2 cut(s) | 59, 256 |
| Hin1II | CATG | 6 cut(s) | 70, 283, 569, 931, 1061, 1072 |
| Hin6I | GCGC | 2 cut(s) | 57, 254 |
| HinP1I | GCGC | 2 cut(s) | 57, 254 |
| HinfI | GANTC | 8 cut(s) | 78, 112, 283, 336, 364, 724, 850, 1275 |
| HpaII | CCGG | 2 cut(s) | 812, 1088 |
| HphI | GGTGA | 3 cut(s) | 845, 1332, 1339 |
| Hpy166II | GTNNAC | 2 cut(s) | 754, 953 |
| Hpy188I | TCNGA | 7 cut(s) | 111, 220, 590, 715, 903, 937, 1400 |
| Hpy188III | TCNNGA | 7 cut(s) | 92, 280, 340, 812, 1006, 1017, 1182 |
| Hpy8I | GTNNAC | 2 cut(s) | 754, 953 |
| Hpy99I | CGWCG | 1 cut(s) | 291 |
| HpyAV | CCTTC | 4 cut(s) | 203, 629, 784, 830 |
| HpyCH4III | ACNGT | 1 cut(s) | 98 |
| HpyCH4IV | ACGT | 3 cut(s) | 138, 387, 451 |
| HpyCH4V | TGCA | 9 cut(s) | 171, 307, 374, 458, 609, 615, 700, 786, 1057 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 530 |
| HpyF3I | CTNAG | 5 cut(s) | 60, 728, 902, 936, 1397 |
| HpySE526I | ACGT | 3 cut(s) | 138, 387, 451 |
| Hsp92II | CATG | 6 cut(s) | 70, 283, 569, 931, 1061, 1072 |
| HspAI | GCGC | 2 cut(s) | 57, 254 |
| Kpn2I | TCCGGA | 1 cut(s) | 811 |
| Kzo9I | GATC | 8 cut(s) | 4, 594, 715, 892, 987, 1013, 1169, 1417 |
| LguI | GCTCTTC | 1 cut(s) | 1447 |
| LmnI | GCTCC | 2 cut(s) | 814, 1438 |
| LweI | GCATC | 3 cut(s) | 158, 709, 741 |
| MaeI | CTAG | 3 cut(s) | 758, 1101, 1353 |
| MaeII | ACGT | 3 cut(s) | 138, 387, 451 |
| MaeIII | GTNAC | 5 cut(s) | 139, 383, 802, 1243, 1368 |
| MalI | GATC | 8 cut(s) | 6, 596, 717, 894, 989, 1015, 1171, 1419 |
| MboI | GATC | 8 cut(s) | 4, 594, 715, 892, 987, 1013, 1169, 1417 |
| MboII | GAAGA | 4 cut(s) | 80, 1330, 1427, 1464 |
| MfeI | CAATTG | 1 cut(s) | 663 |
| MflI | RGATCY | 5 cut(s) | 594, 715, 987, 1013, 1169 |
| MhlI | GDGCHC | 1 cut(s) | 1305 |
| MmeI | TCCRAC | 4 cut(s) | 56, 243, 693, 813 |
| Mph1103I | ATGCAT | 2 cut(s) | 376, 1059 |
| MroI | TCCGGA | 1 cut(s) | 811 |
| MroXI | GAANNNNTTC | 1 cut(s) | 363 |
| MseI | TTAA | 3 cut(s) | 200, 618, 924 |
| MslI | CAYNNNNRTG | 2 cut(s) | 379, 926 |
| MspI | CCGG | 2 cut(s) | 812, 1088 |
| MspR9I | CCNGG | 1 cut(s) | 909 |
| MunI | CAATTG | 1 cut(s) | 663 |
| Mva1269I | GAATGC | 2 cut(s) | 268, 548 |
| MvaI | CCWGG | 1 cut(s) | 909 |
| MvnI | CGCG | 1 cut(s) | 57 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 530 |
| NcoI | CCATGG | 1 cut(s) | 66 |
| NdeII | GATC | 8 cut(s) | 4, 594, 715, 892, 987, 1013, 1169, 1417 |
| NlaIII | CATG | 6 cut(s) | 70, 283, 569, 931, 1061, 1072 |
| NlaIV | GGNNCC | 3 cut(s) | 503, 717, 1015 |
| NmeAIII | GCCGAG | 2 cut(s) | 500, 766 |
| NsiI | ATGCAT | 2 cut(s) | 376, 1059 |
| NspI | RCATGY | 3 cut(s) | 931, 1061, 1072 |
| PaeR7I | CTCGAG | 1 cut(s) | 1298 |
| PagI | TCATGA | 1 cut(s) | 279 |
| PciSI | GCTCTTC | 1 cut(s) | 1447 |
| PctI | GAATGC | 2 cut(s) | 268, 548 |
| PdmI | GAANNNNTTC | 1 cut(s) | 363 |
| PfeI | GAWTC | 8 cut(s) | 78, 112, 283, 336, 364, 724, 850, 1275 |
| Psp1406I | AACGTT | 1 cut(s) | 387 |
| Psp6I | CCWGG | 1 cut(s) | 907 |
| PspEI | GGTNACC | 1 cut(s) | 1243 |
| PspGI | CCWGG | 1 cut(s) | 907 |
| PspN4I | GGNNCC | 3 cut(s) | 503, 717, 1015 |
| PspXI | VCTCGAGB | 1 cut(s) | 1298 |
| PsuI | RGATCY | 5 cut(s) | 594, 715, 987, 1013, 1169 |
| RsaI | GTAC | 4 cut(s) | 1067, 1129, 1136, 1335 |
| RsaNI | GTAC | 4 cut(s) | 1066, 1128, 1135, 1334 |
| RseI | CAYNNNNRTG | 2 cut(s) | 379, 926 |
| SapI | GCTCTTC | 1 cut(s) | 1447 |
| SaqAI | TTAA | 3 cut(s) | 200, 618, 924 |
| Sau3AI | GATC | 8 cut(s) | 4, 594, 715, 892, 987, 1013, 1169, 1417 |
| ScaI | AGTACT | 1 cut(s) | 1129 |
| ScrFI | CCNGG | 1 cut(s) | 909 |
| SduI | GDGCHC | 1 cut(s) | 1305 |
| SfaNI | GCATC | 3 cut(s) | 158, 709, 741 |
| Sfr274I | CTCGAG | 1 cut(s) | 1298 |
| SlaI | CTCGAG | 1 cut(s) | 1298 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 379, 926 |
| SmlI | CTYRAG | 1 cut(s) | 1298 |
| SmoI | CTYRAG | 1 cut(s) | 1298 |
| SsiI | CCGC | 2 cut(s) | 333, 379 |
| SspI | AATATT | 2 cut(s) | 538, 562 |
| SspMI | CTAG | 3 cut(s) | 758, 1101, 1353 |
| StyD4I | CCNGG | 1 cut(s) | 907 |
| StyI | CCWWGG | 4 cut(s) | 66, 237, 862, 1165 |
| TaaI | ACNGT | 1 cut(s) | 98 |
| TaiI | ACGT | 3 cut(s) | 141, 390, 454 |
| TaqI | TCGA | 5 cut(s) | 40, 339, 357, 1278, 1299 |
| TatI | WGTACW | 3 cut(s) | 1127, 1134, 1333 |
| TfiI | GAWTC | 8 cut(s) | 78, 112, 283, 336, 364, 724, 850, 1275 |
| Tru1I | TTAA | 3 cut(s) | 200, 618, 924 |
| Tru9I | TTAA | 3 cut(s) | 200, 618, 924 |
| TscAI | CASTG | 1 cut(s) | 726 |
| TspDTI | ATGAA | 6 cut(s) | 170, 268, 500, 554, 663, 1217 |
| TspGWI | ACGGA | 1 cut(s) | 693 |
| TspRI | CASTG | 1 cut(s) | 726 |
| XapI | RAATTY | 3 cut(s) | 203, 841, 1113 |
| XceI | RCATGY | 3 cut(s) | 931, 1061, 1072 |
| XhoI | CTCGAG | 1 cut(s) | 1298 |
| XmiI | GTMKAC | 2 cut(s) | 753, 952 |
| XmnI | GAANNNNTTC | 1 cut(s) | 363 |
| XspI | CTAG | 3 cut(s) | 758, 1101, 1353 |
| ZrmI | AGTACT | 1 cut(s) | 1129 |
| Zsp2I | ATGCAT | 2 cut(s) | 376, 1059 |