ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 7 cut(s) | 75, 117, 120, 132, 228, 484, 717 |
| AclI | AACGTT | 1 cut(s) | 611 |
| AcuI | CTGAAG | 1 cut(s) | 455 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 524 |
| AflII | CTTAAG | 2 cut(s) | 56, 533 |
| AjnI | CCWGG | 1 cut(s) | 523 |
| Alw21I | GWGCWC | 1 cut(s) | 747 |
| Alw26I | GTCTC | 3 cut(s) | 305, 330, 435 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 197 |
| ApeKI | GCWGC | 8 cut(s) | 152, 175, 191, 194, 222, 497, 500, 581 |
| AsuHPI | GGTGA | 3 cut(s) | 89, 409, 581 |
| AsuII | TTCGAA | 1 cut(s) | 595 |
| BaeGI | GKGCMC | 1 cut(s) | 556 |
| BanII | GRGCYC | 1 cut(s) | 747 |
| Bbv12I | GWGCWC | 1 cut(s) | 747 |
| BbvI | GCAGC | 8 cut(s) | 164, 181, 187, 203, 209, 484, 487, 568 |
| BccI | CCATC | 6 cut(s) | 301, 420, 542, 566, 663, 731 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 176, 210 |
| BciT130I | CCWGG | 1 cut(s) | 525 |
| BcoDI | GTCTC | 3 cut(s) | 305, 330, 435 |
| BfaI | CTAG | 2 cut(s) | 443, 492 |
| BfmI | CTRYAG | 1 cut(s) | 582 |
| BfrI | CTTAAG | 2 cut(s) | 56, 533 |
| Bme1390I | CCNGG | 1 cut(s) | 525 |
| BmrFI | CCNGG | 1 cut(s) | 525 |
| BpmI | CTGGAG | 1 cut(s) | 57 |
| Bpu14I | TTCGAA | 1 cut(s) | 595 |
| BsaI | GGTCTC | 1 cut(s) | 435 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 732 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 524 |
| Bse1I | ACTGG | 1 cut(s) | 40 |
| Bse3DI | GCAATG | 3 cut(s) | 71, 314, 571 |
| BseBI | CCWGG | 1 cut(s) | 525 |
| BseGI | GGATG | 1 cut(s) | 674 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 524 |
| BseMI | GCAATG | 3 cut(s) | 71, 314, 571 |
| BseMII | CTCAG | 1 cut(s) | 341 |
| BseNI | ACTGG | 1 cut(s) | 40 |
| BseRI | GAGGAG | 7 cut(s) | 54, 156, 255, 258, 276, 279, 510 |
| BseSI | GKGCMC | 1 cut(s) | 556 |
| BseXI | GCAGC | 8 cut(s) | 164, 181, 187, 203, 209, 484, 487, 568 |
| BseYI | CCCAGC | 2 cut(s) | 230, 409 |
| BsgI | GTGCAG | 1 cut(s) | 632 |
| BsiHKAI | GWGCWC | 1 cut(s) | 747 |
| BslFI | GGGAC | 2 cut(s) | 46, 248 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 524 |
| BsmAI | GTCTC | 3 cut(s) | 305, 330, 435 |
| BsmFI | GGGAC | 2 cut(s) | 46, 248 |
| Bso31I | GGTCTC | 1 cut(s) | 435 |
| Bsp119I | TTCGAA | 1 cut(s) | 595 |
| Bsp1286I | GDGCHC | 2 cut(s) | 556, 747 |
| BspACI | CCGC | 7 cut(s) | 75, 117, 120, 132, 228, 484, 717 |
| BspCNI | CTCAG | 1 cut(s) | 340 |
| BspMAI | CTGCAG | 1 cut(s) | 586 |
| BspQI | GCTCTTC | 2 cut(s) | 142, 165 |
| BspT104I | TTCGAA | 1 cut(s) | 595 |
| BspTI | CTTAAG | 2 cut(s) | 56, 533 |
| BspTNI | GGTCTC | 1 cut(s) | 435 |
| BsrDI | GCAATG | 3 cut(s) | 71, 314, 571 |
| BsrI | ACTGG | 1 cut(s) | 40 |
| Bst2UI | CCWGG | 1 cut(s) | 525 |
| Bst4CI | ACNGT | 2 cut(s) | 113, 545 |
| Bst6I | CTCTTC | 5 cut(s) | 2, 142, 165, 441, 597 |
| BstAFI | CTTAAG | 2 cut(s) | 56, 533 |
| BstBI | TTCGAA | 1 cut(s) | 595 |
| BstDEI | CTNAG | 2 cut(s) | 327, 557 |
| BstF5I | GGATG | 1 cut(s) | 674 |
| BstMAI | GTCTC | 3 cut(s) | 305, 330, 435 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 129 |
| BstNI | CCWGG | 1 cut(s) | 525 |
| BstSCI | CCNGG | 1 cut(s) | 523 |
| BstSFI | CTRYAG | 1 cut(s) | 582 |
| BstSLI | GKGCMC | 1 cut(s) | 556 |
| BstV1I | GCAGC | 8 cut(s) | 164, 181, 187, 203, 209, 484, 487, 568 |
| BtsCI | GGATG | 1 cut(s) | 674 |
| CaiI | CAGNNNCTG | 1 cut(s) | 197 |
| CviAII | CATG | 3 cut(s) | 283, 346, 418 |
| DdeI | CTNAG | 2 cut(s) | 327, 557 |
| Eam1104I | CTCTTC | 5 cut(s) | 2, 142, 165, 441, 597 |
| EarI | CTCTTC | 5 cut(s) | 2, 142, 165, 441, 597 |
| EciI | GGCGGA | 3 cut(s) | 147, 499, 732 |
| Ecl136II | GAGCTC | 1 cut(s) | 745 |
| Eco24I | GRGCYC | 1 cut(s) | 747 |
| Eco31I | GGTCTC | 1 cut(s) | 435 |
| Eco53kI | GAGCTC | 1 cut(s) | 745 |
| Eco57I | CTGAAG | 1 cut(s) | 455 |
| EcoICRI | GAGCTC | 1 cut(s) | 745 |
| EcoRII | CCWGG | 1 cut(s) | 523 |
| EcoT38I | GRGCYC | 1 cut(s) | 747 |
| FaeI | CATG | 3 cut(s) | 286, 349, 421 |
| FaiI | YATR | 9 cut(s) | 284, 305, 347, 383, 388, 419, 723, 730, 751 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 139, 171, 162, 194 |
| FaqI | GGGAC | 2 cut(s) | 46, 248 |
| FatI | CATG | 3 cut(s) | 282, 345, 417 |
| FokI | GGATG | 1 cut(s) | 681 |
| FriOI | GRGCYC | 1 cut(s) | 747 |
| FspBI | CTAG | 2 cut(s) | 443, 492 |
| GsaI | CCCAGC | 2 cut(s) | 234, 413 |
| GsuI | CTGGAG | 1 cut(s) | 57 |
| Hin1II | CATG | 3 cut(s) | 286, 349, 421 |
| HindIII | AAGCTT | 2 cut(s) | 437, 635 |
| HphI | GGTGA | 3 cut(s) | 89, 409, 581 |
| Hpy166II | GTNNAC | 1 cut(s) | 400 |
| Hpy188I | TCNGA | 2 cut(s) | 289, 435 |
| Hpy188III | TCNNGA | 5 cut(s) | 185, 364, 443, 467, 734 |
| Hpy8I | GTNNAC | 1 cut(s) | 400 |
| Hpy99I | CGWCG | 3 cut(s) | 110, 113, 459 |
| HpyAV | CCTTC | 1 cut(s) | 522 |
| HpyCH4III | ACNGT | 2 cut(s) | 113, 545 |
| HpyCH4IV | ACGT | 1 cut(s) | 611 |
| HpyCH4V | TGCA | 4 cut(s) | 319, 503, 584, 649 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 129 |
| HpyF3I | CTNAG | 2 cut(s) | 327, 557 |
| HpySE526I | ACGT | 1 cut(s) | 611 |
| Hsp92II | CATG | 3 cut(s) | 286, 349, 421 |
| LguI | GCTCTTC | 2 cut(s) | 142, 165 |
| LmnI | GCTCC | 2 cut(s) | 134, 230 |
| Lsp1109I | GCAGC | 8 cut(s) | 164, 181, 187, 203, 209, 484, 487, 568 |
| MaeI | CTAG | 2 cut(s) | 443, 492 |
| MaeII | ACGT | 1 cut(s) | 611 |
| MaeIII | GTNAC | 1 cut(s) | 697 |
| MboII | GAAGA | 6 cut(s) | 19, 159, 173, 182, 458, 614 |
| MhlI | GDGCHC | 2 cut(s) | 556, 747 |
| MmeI | TCCRAC | 1 cut(s) | 79 |
| MseI | TTAA | 5 cut(s) | 57, 534, 540, 663, 704 |
| MspA1I | CMGCKG | 3 cut(s) | 194, 230, 331 |
| MspCI | CTTAAG | 2 cut(s) | 56, 533 |
| MspR9I | CCNGG | 1 cut(s) | 525 |
| MvaI | CCWGG | 1 cut(s) | 525 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 129 |
| NlaIII | CATG | 3 cut(s) | 286, 349, 421 |
| NspV | TTCGAA | 1 cut(s) | 595 |
| PciSI | GCTCTTC | 2 cut(s) | 142, 165 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 207 |
| PfoI | TCCNGGA | 1 cut(s) | 523 |
| Psp124BI | GAGCTC | 1 cut(s) | 747 |
| Psp1406I | AACGTT | 1 cut(s) | 611 |
| Psp6I | CCWGG | 1 cut(s) | 523 |
| PspFI | CCCAGC | 2 cut(s) | 230, 409 |
| PspGI | CCWGG | 1 cut(s) | 523 |
| PstI | CTGCAG | 1 cut(s) | 586 |
| PstNI | CAGNNNCTG | 1 cut(s) | 197 |
| PvuII | CAGCTG | 2 cut(s) | 194, 331 |
| SacI | GAGCTC | 1 cut(s) | 747 |
| SapI | GCTCTTC | 2 cut(s) | 142, 165 |
| SaqAI | TTAA | 5 cut(s) | 57, 534, 540, 663, 704 |
| ScrFI | CCNGG | 1 cut(s) | 525 |
| SduI | GDGCHC | 2 cut(s) | 556, 747 |
| SfcI | CTRYAG | 1 cut(s) | 582 |
| SfuI | TTCGAA | 1 cut(s) | 595 |
| SmlI | CTYRAG | 2 cut(s) | 56, 533 |
| SmoI | CTYRAG | 2 cut(s) | 56, 533 |
| SsiI | CCGC | 7 cut(s) | 75, 117, 120, 132, 228, 484, 717 |
| SspMI | CTAG | 2 cut(s) | 443, 492 |
| SstI | GAGCTC | 1 cut(s) | 747 |
| StyD4I | CCNGG | 1 cut(s) | 523 |
| TaaI | ACNGT | 2 cut(s) | 113, 545 |
| TaiI | ACGT | 1 cut(s) | 614 |
| TaqI | TCGA | 4 cut(s) | 186, 405, 457, 595 |
| TauI | GCSGC | 2 cut(s) | 120, 123 |
| Tru1I | TTAA | 5 cut(s) | 57, 534, 540, 663, 704 |
| Tru9I | TTAA | 5 cut(s) | 57, 534, 540, 663, 704 |
| TseI | GCWGC | 8 cut(s) | 152, 175, 191, 194, 222, 497, 500, 581 |
| TspDTI | ATGAA | 1 cut(s) | 615 |
| Vha464I | CTTAAG | 2 cut(s) | 56, 533 |
| XbaI | TCTAGA | 1 cut(s) | 442 |
| XspI | CTAG | 2 cut(s) | 443, 492 |