Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 47 - 141 | 3.9e-18 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 5 cut(s) | 50, 132, 317, 446, 449 |
| AclWI | GGATC | 3 cut(s) | 41, 209, 222 |
| AcoI | YGGCCR | 2 cut(s) | 184, 270 |
| AcvI | CACGTG | 1 cut(s) | 55 |
| AcyI | GRCGYC | 1 cut(s) | 477 |
| AfaI | GTAC | 2 cut(s) | 33, 294 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 168, 265, 279, 448 |
| AflIII | ACRYGT | 1 cut(s) | 34 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 456, 488 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 380, 412 |
| AluBI | AGCT | 5 cut(s) | 26, 62, 121, 167, 472 |
| AluI | AGCT | 5 cut(s) | 26, 62, 121, 167, 472 |
| AlwI | GGATC | 3 cut(s) | 41, 209, 222 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 70 |
| Ama87I | CYCGRG | 1 cut(s) | 168 |
| AoxI | GGCC | 5 cut(s) | 153, 184, 223, 249, 270 |
| ApeKI | GCWGC | 2 cut(s) | 26, 59 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 504, 551 |
| AspS9I | GGNCC | 1 cut(s) | 224 |
| AsuHPI | GGTGA | 2 cut(s) | 157, 577 |
| AvaI | CYCGRG | 1 cut(s) | 168 |
| BalI | TGGCCA | 2 cut(s) | 186, 272 |
| BamHI | GGATCC | 1 cut(s) | 214 |
| BanII | GRGCYC | 1 cut(s) | 442 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 15, 47, 285, 317 |
| BauI | CACGAG | 1 cut(s) | 312 |
| BbrPI | CACGTG | 1 cut(s) | 55 |
| BbvI | GCAGC | 2 cut(s) | 13, 71 |
| BccI | CCATC | 1 cut(s) | 281 |
| BfmI | CTRYAG | 1 cut(s) | 27 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 446 |
| BglII | AGATCT | 1 cut(s) | 346 |
| BisI | GCNGC | 4 cut(s) | 27, 60, 318, 447 |
| BlsI | GCNGC | 4 cut(s) | 28, 61, 319, 448 |
| BmcAI | AGTACT | 1 cut(s) | 294 |
| BmeT110I | CYCGRG | 1 cut(s) | 168 |
| BmgT120I | GGNCC | 1 cut(s) | 224 |
| BmiI | GGNNCC | 2 cut(s) | 216, 439 |
| BmrI | ACTGGG | 1 cut(s) | 219 |
| BmuI | ACTGGG | 1 cut(s) | 219 |
| BpmI | CTGGAG | 2 cut(s) | 253, 363 |
| Bpu10I | CCTNAGC | 1 cut(s) | 63 |
| BsaAI | YACGTR | 1 cut(s) | 55 |
| BsaHI | GRCGYC | 1 cut(s) | 477 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 168, 265, 279, 448 |
| Bse1I | ACTGG | 2 cut(s) | 214, 346 |
| Bse3DI | GCAATG | 1 cut(s) | 596 |
| BseGI | GGATG | 2 cut(s) | 18, 25 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 168, 265, 279, 448 |
| BseMI | GCAATG | 1 cut(s) | 596 |
| BseMII | CTCAG | 2 cut(s) | 77, 360 |
| BseNI | ACTGG | 2 cut(s) | 214, 346 |
| BseXI | GCAGC | 2 cut(s) | 13, 71 |
| BseYI | CCCAGC | 2 cut(s) | 260, 442 |
| Bsh1285I | CGRYCG | 1 cut(s) | 453 |
| BshFI | GGCC | 5 cut(s) | 155, 186, 225, 251, 272 |
| BsiEI | CGRYCG | 1 cut(s) | 453 |
| BsiHKCI | CYCGRG | 1 cut(s) | 168 |
| BslFI | GGGAC | 1 cut(s) | 242 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 168, 265, 279, 448 |
| BsmFI | GGGAC | 1 cut(s) | 242 |
| BsnI | GGCC | 5 cut(s) | 155, 186, 225, 251, 272 |
| BsoBI | CYCGRG | 1 cut(s) | 168 |
| Bsp1286I | GDGCHC | 1 cut(s) | 442 |
| Bsp143I | GATC | 4 cut(s) | 46, 214, 346, 423 |
| BspACI | CCGC | 5 cut(s) | 50, 132, 317, 446, 449 |
| BspANI | GGCC | 5 cut(s) | 155, 186, 225, 251, 272 |
| BspCNI | CTCAG | 2 cut(s) | 76, 361 |
| BspLI | GGNNCC | 2 cut(s) | 216, 439 |
| BspMAI | CTGCAG | 1 cut(s) | 31 |
| BspPI | GGATC | 3 cut(s) | 41, 209, 222 |
| BsrDI | GCAATG | 1 cut(s) | 596 |
| BsrI | ACTGG | 2 cut(s) | 214, 346 |
| BssMI | GATC | 4 cut(s) | 46, 214, 346, 423 |
| BssNI | GRCGYC | 1 cut(s) | 477 |
| BssSI | CACGAG | 1 cut(s) | 312 |
| Bst2BI | CACGAG | 1 cut(s) | 312 |
| Bst4CI | ACNGT | 1 cut(s) | 385 |
| BstACI | GRCGYC | 1 cut(s) | 477 |
| BstBAI | YACGTR | 1 cut(s) | 55 |
| BstDEI | CTNAG | 4 cut(s) | 63, 83, 369, 417 |
| BstF5I | GGATG | 2 cut(s) | 18, 25 |
| BstKTI | GATC | 4 cut(s) | 49, 217, 349, 426 |
| BstMBI | GATC | 4 cut(s) | 46, 214, 346, 423 |
| BstMCI | CGRYCG | 1 cut(s) | 453 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 97, 446, 452 |
| BstNSI | RCATGY | 1 cut(s) | 38 |
| BstSFI | CTRYAG | 1 cut(s) | 27 |
| BstV1I | GCAGC | 2 cut(s) | 13, 71 |
| BstX2I | RGATCY | 2 cut(s) | 214, 346 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 268 |
| BstYI | RGATCY | 2 cut(s) | 214, 346 |
| BsuRI | GGCC | 5 cut(s) | 155, 186, 225, 251, 272 |
| BtsCI | GGATG | 2 cut(s) | 18, 25 |
| BtsI | GCAGTG | 1 cut(s) | 381 |
| BtsIMutI | CAGTG | 3 cut(s) | 207, 381, 410 |
| CaiI | CAGNNNCTG | 1 cut(s) | 70 |
| Cfr13I | GGNCC | 1 cut(s) | 224 |
| CseI | GACGC | 1 cut(s) | 466 |
| Csp6I | GTAC | 2 cut(s) | 32, 293 |
| CviAII | CATG | 2 cut(s) | 35, 458 |
| CviQI | GTAC | 2 cut(s) | 32, 293 |
| DdeI | CTNAG | 4 cut(s) | 63, 83, 369, 417 |
| DpnI | GATC | 4 cut(s) | 48, 216, 348, 425 |
| DpnII | GATC | 4 cut(s) | 46, 214, 346, 423 |
| EaeI | YGGCCR | 2 cut(s) | 184, 270 |
| Eco24I | GRGCYC | 1 cut(s) | 442 |
| Eco72I | CACGTG | 1 cut(s) | 55 |
| Eco88I | CYCGRG | 1 cut(s) | 168 |
| EcoT38I | GRGCYC | 1 cut(s) | 442 |
| FaeI | CATG | 2 cut(s) | 38, 461 |
| FaqI | GGGAC | 1 cut(s) | 242 |
| FatI | CATG | 2 cut(s) | 34, 457 |
| Fnu4HI | GCNGC | 4 cut(s) | 27, 60, 318, 447 |
| FokI | GGATG | 2 cut(s) | 25, 32 |
| FriOI | GRGCYC | 1 cut(s) | 442 |
| Fsp4HI | GCNGC | 4 cut(s) | 27, 60, 318, 447 |
| GluI | GCNGC | 4 cut(s) | 27, 60, 318, 447 |
| GsaI | CCCAGC | 2 cut(s) | 264, 446 |
| GsuI | CTGGAG | 2 cut(s) | 253, 363 |
| HaeIII | GGCC | 5 cut(s) | 155, 186, 225, 251, 272 |
| HgaI | GACGC | 1 cut(s) | 466 |
| Hin1I | GRCGYC | 1 cut(s) | 477 |
| Hin1II | CATG | 2 cut(s) | 38, 461 |
| HphI | GGTGA | 2 cut(s) | 157, 577 |
| Hpy188I | TCNGA | 1 cut(s) | 370 |
| Hpy188III | TCNNGA | 2 cut(s) | 170, 232 |
| Hpy99I | CGWCG | 1 cut(s) | 482 |
| HpyAV | CCTTC | 2 cut(s) | 241, 311 |
| HpyCH4III | ACNGT | 1 cut(s) | 385 |
| HpyCH4IV | ACGT | 1 cut(s) | 54 |
| HpyCH4V | TGCA | 2 cut(s) | 29, 488 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 97, 446, 452 |
| HpyF3I | CTNAG | 4 cut(s) | 63, 83, 369, 417 |
| HpySE526I | ACGT | 1 cut(s) | 54 |
| Hsp92I | GRCGYC | 1 cut(s) | 477 |
| Hsp92II | CATG | 2 cut(s) | 38, 461 |
| Kzo9I | GATC | 4 cut(s) | 46, 214, 346, 423 |
| LmnI | GCTCC | 1 cut(s) | 437 |
| LpnPI | CCDG | 8 cut(s) | 50, 86, 195, 217, 274, 327, 456, 590 |
| Lsp1109I | GCAGC | 2 cut(s) | 13, 71 |
| MaeII | ACGT | 1 cut(s) | 54 |
| MalI | GATC | 4 cut(s) | 48, 216, 348, 425 |
| MboI | GATC | 4 cut(s) | 46, 214, 346, 423 |
| MboII | GAAGA | 2 cut(s) | 195, 341 |
| MflI | RGATCY | 2 cut(s) | 214, 346 |
| MhlI | GDGCHC | 1 cut(s) | 442 |
| MlsI | TGGCCA | 2 cut(s) | 186, 272 |
| MluCI | AATT | 2 cut(s) | 519, 547 |
| MluNI | TGGCCA | 2 cut(s) | 186, 272 |
| MnlI | CCTC | 3 cut(s) | 364, 503, 530 |
| Mox20I | TGGCCA | 2 cut(s) | 186, 272 |
| MroXI | GAANNNNTTC | 2 cut(s) | 504, 551 |
| MscI | TGGCCA | 2 cut(s) | 186, 272 |
| MseI | TTAA | 2 cut(s) | 297, 522 |
| MslI | CAYNNNNRTG | 1 cut(s) | 11 |
| Msp20I | TGGCCA | 2 cut(s) | 186, 272 |
| MspA1I | CMGCKG | 1 cut(s) | 446 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 97, 446, 452 |
| NdeII | GATC | 4 cut(s) | 46, 214, 346, 423 |
| NlaIII | CATG | 2 cut(s) | 38, 461 |
| NlaIV | GGNNCC | 2 cut(s) | 216, 439 |
| NspI | RCATGY | 1 cut(s) | 38 |
| PciI | ACATGT | 1 cut(s) | 34 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 51 |
| PdmI | GAANNNNTTC | 2 cut(s) | 504, 551 |
| PkrI | GCNGC | 4 cut(s) | 28, 61, 319, 448 |
| PmaCI | CACGTG | 1 cut(s) | 55 |
| PmlI | CACGTG | 1 cut(s) | 55 |
| Ppu21I | YACGTR | 1 cut(s) | 55 |
| PscI | ACATGT | 1 cut(s) | 34 |
| PspCI | CACGTG | 1 cut(s) | 55 |
| PspFI | CCCAGC | 2 cut(s) | 260, 442 |
| PspN4I | GGNNCC | 2 cut(s) | 216, 439 |
| PspPI | GGNCC | 1 cut(s) | 224 |
| PstI | CTGCAG | 1 cut(s) | 31 |
| PstNI | CAGNNNCTG | 1 cut(s) | 70 |
| PsuI | RGATCY | 2 cut(s) | 214, 346 |
| RsaI | GTAC | 2 cut(s) | 33, 294 |
| RsaNI | GTAC | 2 cut(s) | 32, 293 |
| RseI | CAYNNNNRTG | 1 cut(s) | 11 |
| SaqAI | TTAA | 2 cut(s) | 297, 522 |
| SatI | GCNGC | 4 cut(s) | 27, 60, 318, 447 |
| Sau3AI | GATC | 4 cut(s) | 46, 214, 346, 423 |
| Sau96I | GGNCC | 1 cut(s) | 224 |
| ScaI | AGTACT | 1 cut(s) | 294 |
| SduI | GDGCHC | 1 cut(s) | 442 |
| SetI | ASST | 9 cut(s) | 28, 57, 64, 69, 123, 169, 270, 303, 474 |
| SfcI | CTRYAG | 1 cut(s) | 27 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 11 |
| Sse9I | AATT | 2 cut(s) | 519, 547 |
| SsiI | CCGC | 5 cut(s) | 50, 132, 317, 446, 449 |
| TaaI | ACNGT | 1 cut(s) | 385 |
| TaiI | ACGT | 1 cut(s) | 57 |
| TaqI | TCGA | 2 cut(s) | 45, 508 |
| TaqII | GACCGA | 1 cut(s) | 419 |
| TasI | AATT | 2 cut(s) | 519, 547 |
| TatI | WGTACW | 2 cut(s) | 31, 292 |
| TauI | GCSGC | 2 cut(s) | 320, 449 |
| Tru1I | TTAA | 2 cut(s) | 297, 522 |
| Tru9I | TTAA | 2 cut(s) | 297, 522 |
| TscAI | CASTG | 3 cut(s) | 214, 381, 410 |
| TseI | GCWGC | 2 cut(s) | 26, 59 |
| TspDTI | ATGAA | 3 cut(s) | 36, 189, 513 |
| TspGWI | ACGGA | 1 cut(s) | 207 |
| TspRI | CASTG | 3 cut(s) | 214, 381, 410 |
| XceI | RCATGY | 1 cut(s) | 38 |
| XmnI | GAANNNNTTC | 2 cut(s) | 504, 551 |
| ZrmI | AGTACT | 1 cut(s) | 294 |