ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 12 - 80 | 4.4e-13 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 372 |
| AccB1I | GGYRCC | 1 cut(s) | 25 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 354 |
| AccI | GTMKAC | 1 cut(s) | 65 |
| AcsI | RAATTY | 1 cut(s) | 92 |
| AfaI | GTAC | 6 cut(s) | 18, 75, 82, 270, 544, 595 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 354 |
| AgsI | TTSAA | 2 cut(s) | 112, 209 |
| AjnI | CCWGG | 5 cut(s) | 259, 293, 438, 468, 498 |
| AluBI | AGCT | 1 cut(s) | 58 |
| AluI | AGCT | 1 cut(s) | 58 |
| Alw26I | GTCTC | 2 cut(s) | 194, 470 |
| ApeKI | GCWGC | 1 cut(s) | 448 |
| ApoI | RAATTY | 1 cut(s) | 92 |
| AseI | ATTAAT | 1 cut(s) | 561 |
| AsuHPI | GGTGA | 3 cut(s) | 445, 565, 643 |
| BanI | GGYRCC | 1 cut(s) | 25 |
| BbvI | GCAGC | 1 cut(s) | 435 |
| BccI | CCATC | 2 cut(s) | 292, 563 |
| BciT130I | CCWGG | 5 cut(s) | 261, 295, 440, 470, 500 |
| BcoDI | GTCTC | 2 cut(s) | 194, 470 |
| BisI | GCNGC | 1 cut(s) | 449 |
| BlsI | GCNGC | 1 cut(s) | 450 |
| Bme1390I | CCNGG | 5 cut(s) | 261, 295, 440, 470, 500 |
| BmiI | GGNNCC | 2 cut(s) | 27, 156 |
| BmrFI | CCNGG | 5 cut(s) | 261, 295, 440, 470, 500 |
| BmrI | ACTGGG | 1 cut(s) | 606 |
| BmuI | ACTGGG | 1 cut(s) | 606 |
| BpmI | CTGGAG | 2 cut(s) | 182, 452 |
| BsaJI | CCNNGG | 3 cut(s) | 260, 499, 527 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 354 |
| Bse1I | ACTGG | 2 cut(s) | 595, 601 |
| BseBI | CCWGG | 5 cut(s) | 261, 295, 440, 470, 500 |
| BseDI | CCNNGG | 3 cut(s) | 260, 499, 527 |
| BseGI | GGATG | 2 cut(s) | 256, 303 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 354 |
| BseMII | CTCAG | 1 cut(s) | 530 |
| BseNI | ACTGG | 2 cut(s) | 595, 601 |
| BseRI | GAGGAG | 1 cut(s) | 20 |
| BseXI | GCAGC | 1 cut(s) | 435 |
| BsgI | GTGCAG | 1 cut(s) | 323 |
| Bsh1285I | CGRYCG | 1 cut(s) | 275 |
| BshNI | GGYRCC | 1 cut(s) | 25 |
| BsiEI | CGRYCG | 1 cut(s) | 275 |
| BslFI | GGGAC | 1 cut(s) | 509 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 354 |
| BsmAI | GTCTC | 2 cut(s) | 194, 470 |
| BsmBI | CGTCTC | 1 cut(s) | 470 |
| BsmFI | GGGAC | 1 cut(s) | 509 |
| Bsp1407I | TGTACA | 1 cut(s) | 73 |
| BspCNI | CTCAG | 1 cut(s) | 531 |
| BspLI | GGNNCC | 2 cut(s) | 27, 156 |
| BspT107I | GGYRCC | 1 cut(s) | 25 |
| BsrGI | TGTACA | 1 cut(s) | 73 |
| BsrI | ACTGG | 2 cut(s) | 595, 601 |
| BssECI | CCNNGG | 3 cut(s) | 260, 499, 527 |
| BssT1I | CCWWGG | 1 cut(s) | 527 |
| Bst2UI | CCWGG | 5 cut(s) | 261, 295, 440, 470, 500 |
| Bst4CI | ACNGT | 1 cut(s) | 273 |
| Bst6I | CTCTTC | 3 cut(s) | 192, 289, 389 |
| BstAUI | TGTACA | 1 cut(s) | 73 |
| BstDEI | CTNAG | 1 cut(s) | 539 |
| BstF5I | GGATG | 2 cut(s) | 256, 303 |
| BstMAI | GTCTC | 2 cut(s) | 194, 470 |
| BstMCI | CGRYCG | 1 cut(s) | 275 |
| BstNI | CCWGG | 5 cut(s) | 261, 295, 440, 470, 500 |
| BstNSI | RCATGY | 1 cut(s) | 521 |
| BstSCI | CCNGG | 5 cut(s) | 259, 293, 438, 468, 498 |
| BstV1I | GCAGC | 1 cut(s) | 435 |
| BtsCI | GGATG | 2 cut(s) | 256, 303 |
| CseI | GACGC | 1 cut(s) | 46 |
| CsiI | ACCWGGT | 1 cut(s) | 438 |
| Csp6I | GTAC | 6 cut(s) | 17, 74, 81, 269, 543, 594 |
| CviAII | CATG | 1 cut(s) | 518 |
| CviJI | RGCY | 5 cut(s) | 58, 223, 278, 461, 498 |
| CviKI_1 | RGCY | 5 cut(s) | 58, 223, 278, 461, 498 |
| CviQI | GTAC | 6 cut(s) | 17, 74, 81, 269, 543, 594 |
| DdeI | CTNAG | 1 cut(s) | 539 |
| Eam1104I | CTCTTC | 3 cut(s) | 192, 289, 389 |
| EarI | CTCTTC | 3 cut(s) | 192, 289, 389 |
| Eco130I | CCWWGG | 1 cut(s) | 527 |
| EcoRII | CCWGG | 5 cut(s) | 259, 293, 438, 468, 498 |
| EcoT14I | CCWWGG | 1 cut(s) | 527 |
| ErhI | CCWWGG | 1 cut(s) | 527 |
| Esp3I | CGTCTC | 1 cut(s) | 470 |
| FaeI | CATG | 1 cut(s) | 521 |
| FaqI | GGGAC | 1 cut(s) | 509 |
| FatI | CATG | 1 cut(s) | 517 |
| FblI | GTMKAC | 1 cut(s) | 65 |
| Fnu4HI | GCNGC | 1 cut(s) | 449 |
| FokI | GGATG | 2 cut(s) | 263, 310 |
| Fsp4HI | GCNGC | 1 cut(s) | 449 |
| GluI | GCNGC | 1 cut(s) | 449 |
| GsuI | CTGGAG | 2 cut(s) | 182, 452 |
| HgaI | GACGC | 1 cut(s) | 46 |
| Hin1II | CATG | 1 cut(s) | 521 |
| HinfI | GANTC | 1 cut(s) | 609 |
| HphI | GGTGA | 3 cut(s) | 445, 565, 643 |
| Hpy166II | GTNNAC | 3 cut(s) | 66, 122, 436 |
| Hpy188I | TCNGA | 1 cut(s) | 540 |
| Hpy188III | TCNNGA | 1 cut(s) | 161 |
| Hpy8I | GTNNAC | 3 cut(s) | 66, 122, 436 |
| HpyAV | CCTTC | 2 cut(s) | 97, 354 |
| HpyCH4III | ACNGT | 1 cut(s) | 273 |
| HpyCH4V | TGCA | 3 cut(s) | 34, 304, 575 |
| HpyF3I | CTNAG | 1 cut(s) | 539 |
| Hsp92II | CATG | 1 cut(s) | 521 |
| Lsp1109I | GCAGC | 1 cut(s) | 435 |
| MabI | ACCWGGT | 1 cut(s) | 438 |
| MboII | GAAGA | 4 cut(s) | 209, 276, 406, 568 |
| MfeI | CAATTG | 3 cut(s) | 115, 204, 338 |
| MluCI | AATT | 5 cut(s) | 92, 115, 204, 338, 373 |
| MlyI | GAGTC | 1 cut(s) | 618 |
| MmeI | TCCRAC | 1 cut(s) | 228 |
| MnlI | CCTC | 9 cut(s) | 16, 157, 168, 384, 424, 474, 500, 546, 638 |
| MseI | TTAA | 1 cut(s) | 561 |
| MspR9I | CCNGG | 5 cut(s) | 261, 295, 440, 470, 500 |
| MunI | CAATTG | 3 cut(s) | 115, 204, 338 |
| MvaI | CCWGG | 5 cut(s) | 261, 295, 440, 470, 500 |
| NlaIII | CATG | 1 cut(s) | 521 |
| NlaIV | GGNNCC | 2 cut(s) | 27, 156 |
| NspI | RCATGY | 1 cut(s) | 521 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 354 |
| PfoI | TCCNGGA | 1 cut(s) | 468 |
| PkrI | GCNGC | 1 cut(s) | 450 |
| PleI | GAGTC | 1 cut(s) | 617 |
| PpsI | GAGTC | 1 cut(s) | 617 |
| PshBI | ATTAAT | 1 cut(s) | 561 |
| PsiI | TTATAA | 1 cut(s) | 372 |
| Psp6I | CCWGG | 5 cut(s) | 259, 293, 438, 468, 498 |
| PspGI | CCWGG | 5 cut(s) | 259, 293, 438, 468, 498 |
| PspN4I | GGNNCC | 2 cut(s) | 27, 156 |
| RsaI | GTAC | 6 cut(s) | 18, 75, 82, 270, 544, 595 |
| RsaNI | GTAC | 6 cut(s) | 17, 74, 81, 269, 543, 594 |
| SaqAI | TTAA | 1 cut(s) | 561 |
| SatI | GCNGC | 1 cut(s) | 449 |
| SchI | GAGTC | 1 cut(s) | 618 |
| ScrFI | CCNGG | 5 cut(s) | 261, 295, 440, 470, 500 |
| SexAI | ACCWGGT | 1 cut(s) | 438 |
| Sse9I | AATT | 5 cut(s) | 92, 115, 204, 338, 373 |
| StyD4I | CCNGG | 5 cut(s) | 259, 293, 438, 468, 498 |
| StyI | CCWWGG | 1 cut(s) | 527 |
| TaaI | ACNGT | 1 cut(s) | 273 |
| TasI | AATT | 5 cut(s) | 92, 115, 204, 338, 373 |
| TatI | WGTACW | 4 cut(s) | 16, 73, 80, 542 |
| Tru1I | TTAA | 1 cut(s) | 561 |
| Tru9I | TTAA | 1 cut(s) | 561 |
| TseI | GCWGC | 1 cut(s) | 448 |
| TspDTI | ATGAA | 1 cut(s) | 569 |
| TspGWI | ACGGA | 2 cut(s) | 219, 608 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 354 |
| VspI | ATTAAT | 1 cut(s) | 561 |
| XapI | RAATTY | 1 cut(s) | 92 |
| XceI | RCATGY | 1 cut(s) | 521 |
| XmiI | GTMKAC | 1 cut(s) | 65 |