Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 89, 842, 1360 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 663 |
| AccBSI | CCGCTC | 1 cut(s) | 349 |
| AccI | GTMKAC | 1 cut(s) | 1112 |
| AclWI | GGATC | 2 cut(s) | 329, 1617 |
| AcoI | YGGCCR | 1 cut(s) | 1098 |
| AcsI | RAATTY | 1 cut(s) | 996 |
| AcyI | GRCGYC | 4 cut(s) | 90, 1236, 1293, 1361 |
| AfaI | GTAC | 4 cut(s) | 534, 632, 677, 1265 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 663, 752, 1324, 1445 |
| AflIII | ACRYGT | 2 cut(s) | 895, 1835 |
| AgsI | TTSAA | 4 cut(s) | 148, 511, 902, 1247 |
| AjiI | CACGTC | 1 cut(s) | 1836 |
| AjnI | CCWGG | 3 cut(s) | 990, 1060, 1605 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1625, 1657 |
| Alw21I | GWGCWC | 1 cut(s) | 1757 |
| Alw26I | GTCTC | 3 cut(s) | 693, 1336, 1889 |
| AlwI | GGATC | 2 cut(s) | 329, 1617 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 821 |
| AoxI | GGCC | 4 cut(s) | 321, 1098, 1306, 1774 |
| ApeKI | GCWGC | 9 cut(s) | 221, 254, 854, 937, 940, 1251, 1373, 1714, 1806 |
| ApoI | RAATTY | 1 cut(s) | 996 |
| AspLEI | GCGC | 4 cut(s) | 92, 1084, 1281, 1363 |
| AspS9I | GGNCC | 2 cut(s) | 988, 1306 |
| AsuC2I | CCSGG | 1 cut(s) | 1230 |
| AsuHPI | GGTGA | 4 cut(s) | 17, 128, 456, 767 |
| AvaII | GGWCC | 1 cut(s) | 988 |
| AxyI | CCTNAGG | 2 cut(s) | 156, 680 |
| BaeGI | GKGCMC | 2 cut(s) | 381, 845 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1384, 1417 |
| BanI | GGYRCC | 3 cut(s) | 89, 842, 1360 |
| BanII | GRGCYC | 2 cut(s) | 1230, 1757 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 525, 557 |
| BauI | CACGAG | 1 cut(s) | 1758 |
| BbsI | GAAGAC | 2 cut(s) | 1642, 1886 |
| Bbv12I | GWGCWC | 1 cut(s) | 1757 |
| BbvI | GCAGC | 9 cut(s) | 208, 241, 866, 949, 952, 1263, 1360, 1726, 1818 |
| BccI | CCATC | 6 cut(s) | 773, 1096, 1208, 1247, 1552, 1737 |
| BciT130I | CCWGG | 3 cut(s) | 992, 1062, 1607 |
| BciVI | GTATCC | 2 cut(s) | 154, 1843 |
| BcnI | CCSGG | 1 cut(s) | 1230 |
| BcoDI | GTCTC | 3 cut(s) | 693, 1336, 1889 |
| BfaI | CTAG | 8 cut(s) | 125, 284, 330, 708, 908, 965, 1071, 1778 |
| BfmI | CTRYAG | 2 cut(s) | 243, 458 |
| BfoI | RGCGCY | 4 cut(s) | 93, 1085, 1282, 1364 |
| BfuI | GTATCC | 2 cut(s) | 154, 1843 |
| Bme1390I | CCNGG | 4 cut(s) | 992, 1062, 1230, 1607 |
| Bme18I | GGWCC | 1 cut(s) | 988 |
| BmgBI | CACGTC | 1 cut(s) | 1836 |
| BmgT120I | GGNCC | 2 cut(s) | 988, 1306 |
| BmiI | GGNNCC | 5 cut(s) | 91, 844, 1095, 1169, 1362 |
| BmrFI | CCNGG | 4 cut(s) | 992, 1062, 1230, 1607 |
| BmrI | ACTGGG | 1 cut(s) | 375 |
| BmsI | GCATC | 8 cut(s) | 510, 1055, 1293, 1385, 1466, 1523, 1804, 1830 |
| BmuI | ACTGGG | 1 cut(s) | 375 |
| BpiI | GAAGAC | 2 cut(s) | 1642, 1886 |
| BpmI | CTGGAG | 4 cut(s) | 480, 601, 1033, 1712 |
| BpuEI | CTTGAG | 3 cut(s) | 1004, 1062, 1417 |
| BpuMI | CCSGG | 1 cut(s) | 1230 |
| Bsa29I | ATCGAT | 2 cut(s) | 192, 1824 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1562 |
| BsaHI | GRCGYC | 4 cut(s) | 90, 1236, 1293, 1361 |
| BsaI | GGTCTC | 2 cut(s) | 693, 1889 |
| BsaJI | CCNNGG | 6 cut(s) | 93, 657, 1186, 1302, 1318, 1490 |
| BsaWI | WCCGGW | 1 cut(s) | 1438 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1031, 1061, 1280, 1310, 1744, 1774 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 663, 752, 1324, 1445 |
| Bse118I | RCCGGY | 1 cut(s) | 319 |
| Bse1I | ACTGG | 2 cut(s) | 91, 381 |
| Bse21I | CCTNAGG | 2 cut(s) | 156, 680 |
| Bse3DI | GCAATG | 2 cut(s) | 1261, 1368 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1562 |
| BseBI | CCWGG | 3 cut(s) | 992, 1062, 1607 |
| BseCI | ATCGAT | 2 cut(s) | 192, 1824 |
| BseDI | CCNNGG | 6 cut(s) | 93, 657, 1186, 1302, 1318, 1490 |
| BseGI | GGATG | 9 cut(s) | 525, 784, 1057, 1070, 1284, 1538, 1738, 1748, 1819 |
| BseJI | GATNNNNATC | 1 cut(s) | 1562 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 663, 752, 1324, 1445 |
| BseMI | GCAATG | 2 cut(s) | 1261, 1368 |
| BseMII | CTCAG | 2 cut(s) | 147, 1900 |
| BseNI | ACTGG | 2 cut(s) | 91, 381 |
| BseRI | GAGGAG | 5 cut(s) | 686, 994, 1121, 1124, 1301 |
| BseSI | GKGCMC | 2 cut(s) | 381, 845 |
| BseXI | GCAGC | 9 cut(s) | 208, 241, 866, 949, 952, 1263, 1360, 1726, 1818 |
| BseYI | CCCAGC | 1 cut(s) | 1587 |
| BsgI | GTGCAG | 1 cut(s) | 1802 |
| BshFI | GGCC | 4 cut(s) | 323, 1100, 1308, 1776 |
| BshNI | GGYRCC | 3 cut(s) | 89, 842, 1360 |
| BshVI | ATCGAT | 2 cut(s) | 192, 1824 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1757 |
| BsiSI | CCGG | 4 cut(s) | 320, 1097, 1230, 1439 |
| BslFI | GGGAC | 1 cut(s) | 1883 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 663, 752, 1324, 1445 |
| BsmAI | GTCTC | 3 cut(s) | 693, 1336, 1889 |
| BsmFI | GGGAC | 1 cut(s) | 1883 |
| BsmI | GAATGC | 1 cut(s) | 373 |
| BsnI | GGCC | 4 cut(s) | 323, 1100, 1308, 1776 |
| Bso31I | GGTCTC | 2 cut(s) | 693, 1889 |
| Bsp1286I | GDGCHC | 4 cut(s) | 381, 845, 1230, 1757 |
| Bsp143I | GATC | 7 cut(s) | 189, 193, 334, 1015, 1540, 1609, 1622 |
| Bsp19I | CCATGG | 3 cut(s) | 657, 1186, 1490 |
| BspANI | GGCC | 4 cut(s) | 323, 1100, 1308, 1776 |
| BspCNI | CTCAG | 2 cut(s) | 148, 1899 |
| BspDI | ATCGAT | 2 cut(s) | 192, 1824 |
| BspLI | GGNNCC | 5 cut(s) | 91, 844, 1095, 1169, 1362 |
| BspMAI | CTGCAG | 1 cut(s) | 247 |
| BspPI | GGATC | 2 cut(s) | 329, 1617 |
| BspT107I | GGYRCC | 3 cut(s) | 89, 842, 1360 |
| BspTNI | GGTCTC | 2 cut(s) | 693, 1889 |
| BsrBI | CCGCTC | 1 cut(s) | 349 |
| BsrDI | GCAATG | 2 cut(s) | 1261, 1368 |
| BsrFI | RCCGGY | 1 cut(s) | 319 |
| BsrI | ACTGG | 2 cut(s) | 91, 381 |
| BssAI | RCCGGY | 1 cut(s) | 319 |
| BssECI | CCNNGG | 6 cut(s) | 93, 657, 1186, 1302, 1318, 1490 |
| BssMI | GATC | 7 cut(s) | 189, 193, 334, 1015, 1540, 1609, 1622 |
| BssNI | GRCGYC | 4 cut(s) | 90, 1236, 1293, 1361 |
| BssSI | CACGAG | 1 cut(s) | 1758 |
| BssT1I | CCWWGG | 5 cut(s) | 93, 657, 1186, 1302, 1490 |
| Bst2BI | CACGAG | 1 cut(s) | 1758 |
| Bst2UI | CCWGG | 3 cut(s) | 992, 1062, 1607 |
| Bst4CI | ACNGT | 6 cut(s) | 462, 567, 599, 1484, 1528, 1855 |
| Bst6I | CTCTTC | 2 cut(s) | 331, 546 |
| BstACI | GRCGYC | 4 cut(s) | 90, 1236, 1293, 1361 |
| BstC8I | GCNNGC | 2 cut(s) | 1774, 1819 |
| BstDEI | CTNAG | 4 cut(s) | 156, 680, 1504, 1886 |
| BstDSI | CCRYGG | 3 cut(s) | 657, 1186, 1490 |
| BstF5I | GGATG | 9 cut(s) | 525, 784, 1057, 1070, 1284, 1538, 1738, 1748, 1819 |
| BstH2I | RGCGCY | 4 cut(s) | 93, 1085, 1282, 1364 |
| BstHHI | GCGC | 4 cut(s) | 92, 1084, 1281, 1363 |
| BstKTI | GATC | 7 cut(s) | 192, 196, 337, 1018, 1543, 1612, 1625 |
| BstMAI | GTCTC | 3 cut(s) | 693, 1336, 1889 |
| BstMBI | GATC | 7 cut(s) | 189, 193, 334, 1015, 1540, 1609, 1622 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 251, 398, 1214, 1723, 1761, 1773 |
| BstNI | CCWGG | 3 cut(s) | 992, 1062, 1607 |
| BstNSI | RCATGY | 3 cut(s) | 725, 899, 1346 |
| BstSCI | CCNGG | 4 cut(s) | 990, 1060, 1228, 1605 |
| BstSFI | CTRYAG | 2 cut(s) | 243, 458 |
| BstSLI | GKGCMC | 2 cut(s) | 381, 845 |
| BstV1I | GCAGC | 9 cut(s) | 208, 241, 866, 949, 952, 1263, 1360, 1726, 1818 |
| BstV2I | GAAGAC | 2 cut(s) | 1642, 1886 |
| BstX2I | RGATCY | 1 cut(s) | 334 |
| BstYI | RGATCY | 1 cut(s) | 334 |
| Bsu15I | ATCGAT | 2 cut(s) | 192, 1824 |
| Bsu36I | CCTNAGG | 2 cut(s) | 156, 680 |
| BsuI | GTATCC | 2 cut(s) | 154, 1843 |
| BsuRI | GGCC | 4 cut(s) | 323, 1100, 1308, 1776 |
| BsuTUI | ATCGAT | 2 cut(s) | 192, 1824 |
| BtgI | CCRYGG | 3 cut(s) | 657, 1186, 1490 |
| BtgZI | GCGATG | 3 cut(s) | 1123, 1186, 1206 |
| BtrI | CACGTC | 1 cut(s) | 1836 |
| BtsCI | GGATG | 9 cut(s) | 525, 784, 1057, 1070, 1284, 1538, 1738, 1748, 1819 |
| BtsI | GCAGTG | 1 cut(s) | 732 |
| BtsIMutI | CAGTG | 1 cut(s) | 732 |
| Cac8I | GCNNGC | 2 cut(s) | 1774, 1819 |
| CaiI | CAGNNNCTG | 1 cut(s) | 821 |
| CfoI | GCGC | 4 cut(s) | 92, 1084, 1281, 1363 |
| Cfr10I | RCCGGY | 1 cut(s) | 319 |
| Cfr13I | GGNCC | 2 cut(s) | 988, 1306 |
| ClaI | ATCGAT | 2 cut(s) | 192, 1824 |
| CseI | GACGC | 2 cut(s) | 1244, 1301 |
| Csp6I | GTAC | 4 cut(s) | 533, 631, 676, 1264 |
| CviQI | GTAC | 4 cut(s) | 533, 631, 676, 1264 |
| DdeI | CTNAG | 4 cut(s) | 156, 680, 1504, 1886 |
| DinI | GGCGCC | 2 cut(s) | 91, 1362 |
| DpnI | GATC | 7 cut(s) | 191, 195, 336, 1017, 1542, 1611, 1624 |
| DpnII | GATC | 7 cut(s) | 189, 193, 334, 1015, 1540, 1609, 1622 |
| EaeI | YGGCCR | 1 cut(s) | 1098 |
| Eam1104I | CTCTTC | 2 cut(s) | 331, 546 |
| EarI | CTCTTC | 2 cut(s) | 331, 546 |
| EciI | GGCGGA | 1 cut(s) | 1288 |
| Ecl136II | GAGCTC | 1 cut(s) | 1755 |
| Eco130I | CCWWGG | 5 cut(s) | 93, 657, 1186, 1302, 1490 |
| Eco24I | GRGCYC | 2 cut(s) | 1230, 1757 |
| Eco31I | GGTCTC | 2 cut(s) | 693, 1889 |
| Eco47I | GGWCC | 1 cut(s) | 988 |
| Eco53kI | GAGCTC | 1 cut(s) | 1755 |
| Eco81I | CCTNAGG | 2 cut(s) | 156, 680 |
| EcoICRI | GAGCTC | 1 cut(s) | 1755 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1306 |
| EcoRII | CCWGG | 3 cut(s) | 990, 1060, 1605 |
| EcoT14I | CCWWGG | 5 cut(s) | 93, 657, 1186, 1302, 1490 |
| EcoT38I | GRGCYC | 2 cut(s) | 1230, 1757 |
| EgeI | GGCGCC | 2 cut(s) | 91, 1362 |
| EheI | GGCGCC | 2 cut(s) | 91, 1362 |
| ErhI | CCWWGG | 5 cut(s) | 93, 657, 1186, 1302, 1490 |
| FaqI | GGGAC | 1 cut(s) | 1883 |
| FauNDI | CATATG | 1 cut(s) | 1043 |
| FblI | GTMKAC | 1 cut(s) | 1112 |
| FokI | GGATG | 9 cut(s) | 532, 791, 1044, 1077, 1271, 1545, 1745, 1755, 1826 |
| FriOI | GRGCYC | 2 cut(s) | 1230, 1757 |
| FspBI | CTAG | 8 cut(s) | 125, 284, 330, 708, 908, 965, 1071, 1778 |
| GlaI | GCGC | 4 cut(s) | 91, 1083, 1280, 1362 |
| GsaI | CCCAGC | 1 cut(s) | 1591 |
| GsuI | CTGGAG | 4 cut(s) | 480, 601, 1033, 1712 |
| HaeII | RGCGCY | 4 cut(s) | 93, 1085, 1282, 1364 |
| HaeIII | GGCC | 4 cut(s) | 323, 1100, 1308, 1776 |
| HapII | CCGG | 4 cut(s) | 320, 1097, 1230, 1439 |
| HgaI | GACGC | 2 cut(s) | 1244, 1301 |
| HhaI | GCGC | 4 cut(s) | 92, 1084, 1281, 1363 |
| Hin1I | GRCGYC | 4 cut(s) | 90, 1236, 1293, 1361 |
| Hin6I | GCGC | 4 cut(s) | 90, 1082, 1279, 1361 |
| HinP1I | GCGC | 4 cut(s) | 90, 1082, 1279, 1361 |
| HincII | GTYRAC | 2 cut(s) | 1113, 1501 |
| HindII | GTYRAC | 2 cut(s) | 1113, 1501 |
| HindIII | AAGCTT | 1 cut(s) | 42 |
| HinfI | GANTC | 6 cut(s) | 121, 410, 742, 1329, 1471, 1789 |
| HpaII | CCGG | 4 cut(s) | 320, 1097, 1230, 1439 |
| HphI | GGTGA | 4 cut(s) | 17, 128, 456, 767 |
| Hpy166II | GTNNAC | 3 cut(s) | 1039, 1113, 1501 |
| Hpy188I | TCNGA | 5 cut(s) | 1540, 1545, 1614, 1622, 1813 |
| Hpy188III | TCNNGA | 7 cut(s) | 125, 330, 352, 580, 1050, 1691, 1793 |
| Hpy8I | GTNNAC | 3 cut(s) | 1039, 1113, 1501 |
| Hpy99I | CGWCG | 3 cut(s) | 1238, 1295, 1603 |
| HpyAV | CCTTC | 6 cut(s) | 349, 555, 758, 803, 1241, 1411 |
| HpyCH4III | ACNGT | 6 cut(s) | 462, 567, 599, 1484, 1528, 1855 |
| HpyCH4IV | ACGT | 1 cut(s) | 1835 |
| HpyCH4V | TGCA | 9 cut(s) | 245, 344, 725, 829, 854, 937, 1376, 1783, 1821 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 251, 398, 1214, 1723, 1761, 1773 |
| HpyF3I | CTNAG | 4 cut(s) | 156, 680, 1504, 1886 |
| HpySE526I | ACGT | 1 cut(s) | 1835 |
| Hsp92I | GRCGYC | 4 cut(s) | 90, 1236, 1293, 1361 |
| HspAI | GCGC | 4 cut(s) | 90, 1082, 1279, 1361 |
| KasI | GGCGCC | 2 cut(s) | 89, 1360 |
| Kzo9I | GATC | 7 cut(s) | 189, 193, 334, 1015, 1540, 1609, 1622 |
| LmnI | GCTCC | 9 cut(s) | 288, 406, 582, 812, 1052, 1099, 1173, 1600, 1752 |
| Lsp1109I | GCAGC | 9 cut(s) | 208, 241, 866, 949, 952, 1263, 1360, 1726, 1818 |
| LweI | GCATC | 8 cut(s) | 510, 1055, 1293, 1385, 1466, 1523, 1804, 1830 |
| MaeI | CTAG | 8 cut(s) | 125, 284, 330, 708, 908, 965, 1071, 1778 |
| MaeII | ACGT | 1 cut(s) | 1835 |
| MaeIII | GTNAC | 5 cut(s) | 5, 462, 490, 759, 947 |
| MalI | GATC | 7 cut(s) | 191, 195, 336, 1017, 1542, 1611, 1624 |
| MbiI | CCGCTC | 1 cut(s) | 349 |
| MboI | GATC | 7 cut(s) | 189, 193, 334, 1015, 1540, 1609, 1622 |
| MboII | GAAGA | 5 cut(s) | 318, 533, 604, 1642, 1886 |
| MflI | RGATCY | 1 cut(s) | 334 |
| MhlI | GDGCHC | 4 cut(s) | 381, 845, 1230, 1757 |
| Mly113I | GGCGCC | 2 cut(s) | 90, 1361 |
| MlyI | GAGTC | 3 cut(s) | 419, 1338, 1798 |
| MmeI | TCCRAC | 3 cut(s) | 1359, 1362, 1510 |
| MseI | TTAA | 5 cut(s) | 263, 504, 732, 1548, 1697 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1191, 1347, 1826, 1877 |
| MspA1I | CMGCKG | 1 cut(s) | 1717 |
| MspI | CCGG | 4 cut(s) | 320, 1097, 1230, 1439 |
| MspR9I | CCNGG | 4 cut(s) | 992, 1062, 1230, 1607 |
| Mva1269I | GAATGC | 1 cut(s) | 373 |
| MvaI | CCWGG | 3 cut(s) | 992, 1062, 1607 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 251, 398, 1214, 1723, 1761, 1773 |
| NarI | GGCGCC | 2 cut(s) | 90, 1361 |
| NciI | CCSGG | 1 cut(s) | 1230 |
| NcoI | CCATGG | 3 cut(s) | 657, 1186, 1490 |
| NdeI | CATATG | 1 cut(s) | 1043 |
| NdeII | GATC | 7 cut(s) | 189, 193, 334, 1015, 1540, 1609, 1622 |
| NlaIV | GGNNCC | 5 cut(s) | 91, 844, 1095, 1169, 1362 |
| NmeAIII | GCCGAG | 1 cut(s) | 1299 |
| NmuCI | GTSAC | 3 cut(s) | 5, 462, 490 |
| NspI | RCATGY | 3 cut(s) | 725, 899, 1346 |
| PciI | ACATGT | 1 cut(s) | 895 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1272 |
| PctI | GAATGC | 1 cut(s) | 373 |
| PfeI | GAWTC | 3 cut(s) | 121, 742, 1471 |
| PflFI | GACNNNGTC | 1 cut(s) | 878 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 663 |
| PfoI | TCCNGGA | 2 cut(s) | 990, 1060 |
| PleI | GAGTC | 3 cut(s) | 418, 1337, 1797 |
| PluTI | GGCGCC | 2 cut(s) | 93, 1364 |
| PpsI | GAGTC | 3 cut(s) | 418, 1337, 1797 |
| PscI | ACATGT | 1 cut(s) | 895 |
| Psp124BI | GAGCTC | 1 cut(s) | 1757 |
| Psp6I | CCWGG | 3 cut(s) | 990, 1060, 1605 |
| PspFI | CCCAGC | 1 cut(s) | 1587 |
| PspGI | CCWGG | 3 cut(s) | 990, 1060, 1605 |
| PspN4I | GGNNCC | 5 cut(s) | 91, 844, 1095, 1169, 1362 |
| PspPI | GGNCC | 2 cut(s) | 988, 1306 |
| PstI | CTGCAG | 1 cut(s) | 247 |
| PstNI | CAGNNNCTG | 1 cut(s) | 821 |
| PsuI | RGATCY | 1 cut(s) | 334 |
| PsyI | GACNNNGTC | 1 cut(s) | 878 |
| RsaI | GTAC | 4 cut(s) | 534, 632, 677, 1265 |
| RsaNI | GTAC | 4 cut(s) | 533, 631, 676, 1264 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1191, 1347, 1826, 1877 |
| SacI | GAGCTC | 1 cut(s) | 1757 |
| SalI | GTCGAC | 1 cut(s) | 1111 |
| SaqAI | TTAA | 5 cut(s) | 263, 504, 732, 1548, 1697 |
| Sau3AI | GATC | 7 cut(s) | 189, 193, 334, 1015, 1540, 1609, 1622 |
| Sau96I | GGNCC | 2 cut(s) | 988, 1306 |
| SchI | GAGTC | 3 cut(s) | 419, 1338, 1798 |
| ScrFI | CCNGG | 4 cut(s) | 992, 1062, 1230, 1607 |
| SduI | GDGCHC | 4 cut(s) | 381, 845, 1230, 1757 |
| SfaNI | GCATC | 8 cut(s) | 510, 1055, 1293, 1385, 1466, 1523, 1804, 1830 |
| SfcI | CTRYAG | 2 cut(s) | 243, 458 |
| SfoI | GGCGCC | 2 cut(s) | 91, 1362 |
| SinI | GGWCC | 1 cut(s) | 988 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1191, 1347, 1826, 1877 |
| SmlI | CTYRAG | 3 cut(s) | 983, 1077, 1396 |
| SmoI | CTYRAG | 3 cut(s) | 983, 1077, 1396 |
| SspDI | GGCGCC | 2 cut(s) | 89, 1360 |
| SspMI | CTAG | 8 cut(s) | 125, 284, 330, 708, 908, 965, 1071, 1778 |
| SstI | GAGCTC | 1 cut(s) | 1757 |
| StyD4I | CCNGG | 4 cut(s) | 990, 1060, 1228, 1605 |
| StyI | CCWWGG | 5 cut(s) | 93, 657, 1186, 1302, 1490 |
| TaaI | ACNGT | 6 cut(s) | 462, 567, 599, 1484, 1528, 1855 |
| TaiI | ACGT | 1 cut(s) | 1838 |
| TaqI | TCGA | 6 cut(s) | 192, 1112, 1124, 1474, 1601, 1824 |
| TatI | WGTACW | 1 cut(s) | 630 |
| TauI | GCSGC | 7 cut(s) | 1208, 1284, 1361, 1518, 1576, 1767, 1862 |
| TfiI | GAWTC | 3 cut(s) | 121, 742, 1471 |
| Tru1I | TTAA | 5 cut(s) | 263, 504, 732, 1548, 1697 |
| Tru9I | TTAA | 5 cut(s) | 263, 504, 732, 1548, 1697 |
| TscAI | CASTG | 1 cut(s) | 732 |
| TseFI | GTSAC | 3 cut(s) | 5, 462, 490 |
| TseI | GCWGC | 9 cut(s) | 221, 254, 854, 937, 940, 1251, 1373, 1714, 1806 |
| Tsp45I | GTSAC | 3 cut(s) | 5, 462, 490 |
| TspDTI | ATGAA | 8 cut(s) | 192, 218, 740, 785, 822, 922, 1046, 1897 |
| TspGWI | ACGGA | 3 cut(s) | 997, 1587, 1745 |
| TspRI | CASTG | 1 cut(s) | 732 |
| Tth111I | GACNNNGTC | 1 cut(s) | 878 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 663 |
| VpaK11BI | GGWCC | 1 cut(s) | 988 |
| XapI | RAATTY | 1 cut(s) | 996 |
| XbaI | TCTAGA | 2 cut(s) | 124, 329 |
| XceI | RCATGY | 3 cut(s) | 725, 899, 1346 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1156 |
| XmiI | GTMKAC | 1 cut(s) | 1112 |
| XspI | CTAG | 8 cut(s) | 125, 284, 330, 708, 908, 965, 1071, 1778 |