Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 354, 490 |
| Acc16I | TGCGCA | 1 cut(s) | 1026 |
| AccB1I | GGYRCC | 1 cut(s) | 1255 |
| AccI | GTMKAC | 1 cut(s) | 721 |
| AccII | CGCG | 1 cut(s) | 449 |
| AciI | CCGC | 3 cut(s) | 1004, 1142, 1145 |
| AclWI | GGATC | 5 cut(s) | 53, 66, 674, 687, 1346 |
| AcsI | RAATTY | 1 cut(s) | 521 |
| AcuI | CTGAAG | 2 cut(s) | 335, 909 |
| AdeI | CACNNNGTG | 2 cut(s) | 735, 1202 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 55, 352, 1151, 1288 |
| AgeI | ACCGGT | 1 cut(s) | 1258 |
| AgsI | TTSAA | 7 cut(s) | 109, 439, 608, 1087, 1162, 1271, 1346 |
| AjnI | CCWGG | 4 cut(s) | 153, 201, 271, 731 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 565, 597, 644, 676 |
| AluBI | AGCT | 7 cut(s) | 319, 611, 757, 811, 1429, 1438, 1442 |
| AluI | AGCT | 7 cut(s) | 319, 611, 757, 811, 1429, 1438, 1442 |
| Alw26I | GTCTC | 3 cut(s) | 376, 498, 536 |
| AlwI | GGATC | 5 cut(s) | 53, 66, 674, 687, 1346 |
| AoxI | GGCC | 1 cut(s) | 834 |
| ApeKI | GCWGC | 3 cut(s) | 5, 469, 1178 |
| ApoI | RAATTY | 1 cut(s) | 521 |
| AsiGI | ACCGGT | 1 cut(s) | 1258 |
| AspLEI | GCGC | 1 cut(s) | 1027 |
| AsuHPI | GGTGA | 3 cut(s) | 245, 404, 1131 |
| AsuII | TTCGAA | 1 cut(s) | 1066 |
| AsuNHI | GCTAGC | 1 cut(s) | 1438 |
| BamHI | GGATCC | 2 cut(s) | 58, 679 |
| BanI | GGYRCC | 1 cut(s) | 1255 |
| BanII | GRGCYC | 1 cut(s) | 637 |
| BbsI | GAAGAC | 1 cut(s) | 1353 |
| BbvI | GCAGC | 3 cut(s) | 17, 481, 1165 |
| BccI | CCATC | 4 cut(s) | 317, 324, 500, 1149 |
| BciT130I | CCWGG | 4 cut(s) | 155, 203, 273, 733 |
| BciVI | GTATCC | 1 cut(s) | 489 |
| BclI | TGATCA | 1 cut(s) | 963 |
| BcoDI | GTCTC | 3 cut(s) | 376, 498, 536 |
| BfaI | CTAG | 5 cut(s) | 72, 222, 693, 1439, 1452 |
| BfmI | CTRYAG | 1 cut(s) | 1283 |
| BfuI | GTATCC | 1 cut(s) | 489 |
| BglII | AGATCT | 1 cut(s) | 616 |
| BisI | GCNGC | 4 cut(s) | 6, 470, 1145, 1179 |
| BlpI | GCTNAGC | 2 cut(s) | 933, 1434 |
| BlsI | GCNGC | 4 cut(s) | 7, 471, 1146, 1180 |
| Bme1390I | CCNGG | 4 cut(s) | 155, 203, 273, 733 |
| BmiI | GGNNCC | 5 cut(s) | 60, 78, 681, 841, 1257 |
| BmrFI | CCNGG | 4 cut(s) | 155, 203, 273, 733 |
| BmrI | ACTGGG | 1 cut(s) | 1198 |
| BmsI | GCATC | 3 cut(s) | 157, 658, 1255 |
| BmtI | GCTAGC | 1 cut(s) | 1442 |
| BmuI | ACTGGG | 1 cut(s) | 1198 |
| BpiI | GAAGAC | 1 cut(s) | 1353 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 933, 1434 |
| Bpu14I | TTCGAA | 1 cut(s) | 1066 |
| BsaI | GGTCTC | 1 cut(s) | 376 |
| BsaJI | CCNNGG | 3 cut(s) | 683, 698, 1038 |
| BsaWI | WCCGGW | 2 cut(s) | 502, 1258 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 79, 109, 202, 232, 478, 508, 1206, 1236 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 55, 352, 1151, 1288 |
| Bse118I | RCCGGY | 2 cut(s) | 836, 1258 |
| Bse1I | ACTGG | 1 cut(s) | 1193 |
| Bse3DI | GCAATG | 1 cut(s) | 889 |
| BseBI | CCWGG | 4 cut(s) | 155, 203, 273, 733 |
| BseDI | CCNNGG | 3 cut(s) | 683, 698, 1038 |
| BseGI | GGATG | 7 cut(s) | 106, 172, 335, 511, 875, 1160, 1324 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 55, 352, 1151, 1288 |
| BseMI | GCAATG | 1 cut(s) | 889 |
| BseMII | CTCAG | 2 cut(s) | 948, 1448 |
| BseNI | ACTGG | 1 cut(s) | 1193 |
| BseXI | GCAGC | 3 cut(s) | 17, 481, 1165 |
| BsgI | GTGCAG | 1 cut(s) | 483 |
| Bsh1236I | CGCG | 1 cut(s) | 449 |
| BshFI | GGCC | 1 cut(s) | 836 |
| BshNI | GGYRCC | 1 cut(s) | 1255 |
| BshTI | ACCGGT | 1 cut(s) | 1258 |
| BsiSI | CCGG | 3 cut(s) | 503, 837, 1259 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 55, 352, 1151, 1288 |
| BsmAI | GTCTC | 3 cut(s) | 376, 498, 536 |
| BsmI | GAATGC | 1 cut(s) | 565 |
| BsnI | GGCC | 1 cut(s) | 836 |
| Bso31I | GGTCTC | 1 cut(s) | 376 |
| Bsp119I | TTCGAA | 1 cut(s) | 1066 |
| Bsp1286I | GDGCHC | 1 cut(s) | 637 |
| Bsp143I | GATC | 8 cut(s) | 58, 114, 259, 616, 679, 963, 1164, 1338 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 933, 1434 |
| BspACI | CCGC | 3 cut(s) | 1004, 1142, 1145 |
| BspANI | GGCC | 1 cut(s) | 836 |
| BspCNI | CTCAG | 2 cut(s) | 949, 1447 |
| BspFNI | CGCG | 1 cut(s) | 449 |
| BspHI | TCATGA | 2 cut(s) | 829, 1059 |
| BspLI | GGNNCC | 5 cut(s) | 60, 78, 681, 841, 1257 |
| BspOI | GCTAGC | 1 cut(s) | 1442 |
| BspPI | GGATC | 5 cut(s) | 53, 66, 674, 687, 1346 |
| BspT104I | TTCGAA | 1 cut(s) | 1066 |
| BspT107I | GGYRCC | 1 cut(s) | 1255 |
| BspTNI | GGTCTC | 1 cut(s) | 376 |
| BsrDI | GCAATG | 1 cut(s) | 889 |
| BsrFI | RCCGGY | 2 cut(s) | 836, 1258 |
| BsrI | ACTGG | 1 cut(s) | 1193 |
| BssAI | RCCGGY | 2 cut(s) | 836, 1258 |
| BssECI | CCNNGG | 3 cut(s) | 683, 698, 1038 |
| BssMI | GATC | 8 cut(s) | 58, 114, 259, 616, 679, 963, 1164, 1338 |
| BssT1I | CCWWGG | 3 cut(s) | 683, 698, 1038 |
| Bst2UI | CCWGG | 4 cut(s) | 155, 203, 273, 733 |
| Bst4CI | ACNGT | 2 cut(s) | 409, 1287 |
| Bst6I | CTCTTC | 1 cut(s) | 590 |
| BstBI | TTCGAA | 1 cut(s) | 1066 |
| BstC8I | GCNNGC | 5 cut(s) | 813, 1149, 1378, 1431, 1440 |
| BstDEI | CTNAG | 5 cut(s) | 263, 415, 933, 957, 1434 |
| BstEII | GGTNACC | 1 cut(s) | 1137 |
| BstF5I | GGATG | 7 cut(s) | 106, 172, 335, 511, 875, 1160, 1324 |
| BstFNI | CGCG | 1 cut(s) | 449 |
| BstHHI | GCGC | 1 cut(s) | 1027 |
| BstKTI | GATC | 8 cut(s) | 61, 117, 262, 619, 682, 966, 1167, 1341 |
| BstMAI | GTCTC | 3 cut(s) | 376, 498, 536 |
| BstMBI | GATC | 8 cut(s) | 58, 114, 259, 616, 679, 963, 1164, 1338 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 11, 145, 167, 763, 1435, 1439 |
| BstNI | CCWGG | 4 cut(s) | 155, 203, 273, 733 |
| BstNSI | RCATGY | 1 cut(s) | 305 |
| BstPI | GGTNACC | 1 cut(s) | 1137 |
| BstSCI | CCNGG | 4 cut(s) | 153, 201, 271, 731 |
| BstSFI | CTRYAG | 1 cut(s) | 1283 |
| BstUI | CGCG | 1 cut(s) | 449 |
| BstV1I | GCAGC | 3 cut(s) | 17, 481, 1165 |
| BstV2I | GAAGAC | 1 cut(s) | 1353 |
| BstX2I | RGATCY | 3 cut(s) | 58, 616, 679 |
| BstYI | RGATCY | 3 cut(s) | 58, 616, 679 |
| BsuI | GTATCC | 1 cut(s) | 489 |
| BsuRI | GGCC | 1 cut(s) | 836 |
| BtsCI | GGATG | 7 cut(s) | 106, 172, 335, 511, 875, 1160, 1324 |
| Cac8I | GCNNGC | 5 cut(s) | 813, 1149, 1378, 1431, 1440 |
| CciI | TCATGA | 2 cut(s) | 829, 1059 |
| CfoI | GCGC | 1 cut(s) | 1027 |
| Cfr10I | RCCGGY | 2 cut(s) | 836, 1258 |
| CseI | GACGC | 1 cut(s) | 1184 |
| CsiI | ACCWGGT | 1 cut(s) | 731 |
| CspAI | ACCGGT | 1 cut(s) | 1258 |
| CviAII | CATG | 5 cut(s) | 50, 302, 830, 1060, 1394 |
| DdeI | CTNAG | 5 cut(s) | 263, 415, 933, 957, 1434 |
| DpnI | GATC | 8 cut(s) | 60, 116, 261, 618, 681, 965, 1166, 1340 |
| DpnII | GATC | 8 cut(s) | 58, 114, 259, 616, 679, 963, 1164, 1338 |
| DraIII | CACNNNGTG | 2 cut(s) | 735, 1202 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 354, 490 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 354, 490 |
| Eam1104I | CTCTTC | 1 cut(s) | 590 |
| EarI | CTCTTC | 1 cut(s) | 590 |
| EciI | GGCGGA | 1 cut(s) | 1019 |
| Eco130I | CCWWGG | 3 cut(s) | 683, 698, 1038 |
| Eco24I | GRGCYC | 1 cut(s) | 637 |
| Eco31I | GGTCTC | 1 cut(s) | 376 |
| Eco57I | CTGAAG | 2 cut(s) | 335, 909 |
| Eco91I | GGTNACC | 1 cut(s) | 1137 |
| EcoO65I | GGTNACC | 1 cut(s) | 1137 |
| EcoRII | CCWGG | 4 cut(s) | 153, 201, 271, 731 |
| EcoT14I | CCWWGG | 3 cut(s) | 683, 698, 1038 |
| EcoT38I | GRGCYC | 1 cut(s) | 637 |
| ErhI | CCWWGG | 3 cut(s) | 683, 698, 1038 |
| FaeI | CATG | 5 cut(s) | 53, 305, 833, 1063, 1397 |
| FatI | CATG | 5 cut(s) | 49, 301, 829, 1059, 1393 |
| FbaI | TGATCA | 1 cut(s) | 963 |
| FblI | GTMKAC | 1 cut(s) | 721 |
| Fnu4HI | GCNGC | 4 cut(s) | 6, 470, 1145, 1179 |
| FokI | GGATG | 7 cut(s) | 113, 179, 342, 518, 882, 1167, 1331 |
| FriOI | GRGCYC | 1 cut(s) | 637 |
| Fsp4HI | GCNGC | 4 cut(s) | 6, 470, 1145, 1179 |
| FspBI | CTAG | 5 cut(s) | 72, 222, 693, 1439, 1452 |
| FspI | TGCGCA | 1 cut(s) | 1026 |
| GlaI | GCGC | 1 cut(s) | 1026 |
| GluI | GCNGC | 4 cut(s) | 6, 470, 1145, 1179 |
| HaeIII | GGCC | 1 cut(s) | 836 |
| HapII | CCGG | 3 cut(s) | 503, 837, 1259 |
| HgaI | GACGC | 1 cut(s) | 1184 |
| HhaI | GCGC | 1 cut(s) | 1027 |
| Hin1II | CATG | 5 cut(s) | 53, 305, 833, 1063, 1397 |
| Hin6I | GCGC | 1 cut(s) | 1025 |
| HinP1I | GCGC | 1 cut(s) | 1025 |
| HincII | GTYRAC | 1 cut(s) | 821 |
| HindII | GTYRAC | 1 cut(s) | 821 |
| HindIII | AAGCTT | 2 cut(s) | 317, 1427 |
| HinfI | GANTC | 7 cut(s) | 38, 53, 365, 1063, 1229, 1271, 1406 |
| HpaII | CCGG | 3 cut(s) | 503, 837, 1259 |
| HphI | GGTGA | 3 cut(s) | 245, 404, 1131 |
| Hpy166II | GTNNAC | 2 cut(s) | 722, 821 |
| Hpy188I | TCNGA | 5 cut(s) | 58, 63, 430, 483, 751 |
| Hpy188III | TCNNGA | 9 cut(s) | 42, 80, 164, 518, 556, 830, 917, 1060, 1172 |
| Hpy8I | GTNNAC | 2 cut(s) | 722, 821 |
| Hpy99I | CGWCG | 2 cut(s) | 487, 490 |
| HpyAV | CCTTC | 4 cut(s) | 389, 591, 971, 1064 |
| HpyCH4III | ACNGT | 2 cut(s) | 409, 1287 |
| HpyCH4IV | ACGT | 1 cut(s) | 1120 |
| HpyCH4V | TGCA | 3 cut(s) | 469, 500, 882 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 11, 145, 167, 763, 1435, 1439 |
| HpyF3I | CTNAG | 5 cut(s) | 263, 415, 933, 957, 1434 |
| HpySE526I | ACGT | 1 cut(s) | 1120 |
| Hsp92II | CATG | 5 cut(s) | 53, 305, 833, 1063, 1397 |
| HspAI | GCGC | 1 cut(s) | 1025 |
| Ksp22I | TGATCA | 1 cut(s) | 963 |
| Kzo9I | GATC | 8 cut(s) | 58, 114, 259, 616, 679, 963, 1164, 1338 |
| LmnI | GCTCC | 2 cut(s) | 136, 568 |
| Lsp1109I | GCAGC | 3 cut(s) | 17, 481, 1165 |
| LweI | GCATC | 3 cut(s) | 157, 658, 1255 |
| MabI | ACCWGGT | 1 cut(s) | 731 |
| MaeI | CTAG | 5 cut(s) | 72, 222, 693, 1439, 1452 |
| MaeII | ACGT | 1 cut(s) | 1120 |
| MaeIII | GTNAC | 2 cut(s) | 905, 1137 |
| MalI | GATC | 8 cut(s) | 60, 116, 261, 618, 681, 965, 1166, 1340 |
| MboI | GATC | 8 cut(s) | 58, 114, 259, 616, 679, 963, 1164, 1338 |
| MboII | GAAGA | 9 cut(s) | 248, 607, 655, 840, 902, 1114, 1174, 1224, 1358 |
| MfeI | CAATTG | 1 cut(s) | 546 |
| MflI | RGATCY | 3 cut(s) | 58, 616, 679 |
| MhlI | GDGCHC | 1 cut(s) | 637 |
| MluCI | AATT | 6 cut(s) | 176, 324, 521, 546, 573, 1411 |
| MlyI | GAGTC | 1 cut(s) | 1415 |
| MmeI | TCCRAC | 2 cut(s) | 506, 572 |
| MseI | TTAA | 5 cut(s) | 30, 945, 1095, 1353, 1367 |
| MspI | CCGG | 3 cut(s) | 503, 837, 1259 |
| MspR9I | CCNGG | 4 cut(s) | 155, 203, 273, 733 |
| MunI | CAATTG | 1 cut(s) | 546 |
| Mva1269I | GAATGC | 1 cut(s) | 565 |
| MvaI | CCWGG | 4 cut(s) | 155, 203, 273, 733 |
| MvnI | CGCG | 1 cut(s) | 449 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 11, 145, 167, 763, 1435, 1439 |
| NdeII | GATC | 8 cut(s) | 58, 114, 259, 616, 679, 963, 1164, 1338 |
| NheI | GCTAGC | 1 cut(s) | 1438 |
| NlaIII | CATG | 5 cut(s) | 53, 305, 833, 1063, 1397 |
| NlaIV | GGNNCC | 5 cut(s) | 60, 78, 681, 841, 1257 |
| NmuCI | GTSAC | 2 cut(s) | 905, 1137 |
| NsbI | TGCGCA | 1 cut(s) | 1026 |
| NspI | RCATGY | 1 cut(s) | 305 |
| NspV | TTCGAA | 1 cut(s) | 1066 |
| PagI | TCATGA | 2 cut(s) | 829, 1059 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1097 |
| PctI | GAATGC | 1 cut(s) | 565 |
| PfeI | GAWTC | 6 cut(s) | 38, 53, 365, 1063, 1229, 1271 |
| PflFI | GACNNNGTC | 2 cut(s) | 490, 1122 |
| PfoI | TCCNGGA | 1 cut(s) | 153 |
| PinAI | ACCGGT | 1 cut(s) | 1258 |
| PkrI | GCNGC | 4 cut(s) | 7, 471, 1146, 1180 |
| PleI | GAGTC | 1 cut(s) | 1414 |
| PpsI | GAGTC | 1 cut(s) | 1414 |
| Psp6I | CCWGG | 4 cut(s) | 153, 201, 271, 731 |
| PspEI | GGTNACC | 1 cut(s) | 1137 |
| PspGI | CCWGG | 4 cut(s) | 153, 201, 271, 731 |
| PspN4I | GGNNCC | 5 cut(s) | 60, 78, 681, 841, 1257 |
| PsuI | RGATCY | 3 cut(s) | 58, 616, 679 |
| PsyI | GACNNNGTC | 2 cut(s) | 490, 1122 |
| SaqAI | TTAA | 5 cut(s) | 30, 945, 1095, 1353, 1367 |
| SatI | GCNGC | 4 cut(s) | 6, 470, 1145, 1179 |
| Sau3AI | GATC | 8 cut(s) | 58, 114, 259, 616, 679, 963, 1164, 1338 |
| SchI | GAGTC | 1 cut(s) | 1415 |
| ScrFI | CCNGG | 4 cut(s) | 155, 203, 273, 733 |
| SduI | GDGCHC | 1 cut(s) | 637 |
| SexAI | ACCWGGT | 1 cut(s) | 731 |
| SfaNI | GCATC | 3 cut(s) | 157, 658, 1255 |
| SfcI | CTRYAG | 1 cut(s) | 1283 |
| SfuI | TTCGAA | 1 cut(s) | 1066 |
| Sse9I | AATT | 6 cut(s) | 176, 324, 521, 546, 573, 1411 |
| SsiI | CCGC | 3 cut(s) | 1004, 1142, 1145 |
| SspMI | CTAG | 5 cut(s) | 72, 222, 693, 1439, 1452 |
| StyD4I | CCNGG | 4 cut(s) | 153, 201, 271, 731 |
| StyI | CCWWGG | 3 cut(s) | 683, 698, 1038 |
| TaaI | ACNGT | 2 cut(s) | 409, 1287 |
| TaiI | ACGT | 1 cut(s) | 1123 |
| TaqI | TCGA | 5 cut(s) | 363, 519, 709, 863, 1066 |
| TasI | AATT | 6 cut(s) | 176, 324, 521, 546, 573, 1411 |
| TauI | GCSGC | 1 cut(s) | 1147 |
| TfiI | GAWTC | 6 cut(s) | 38, 53, 365, 1063, 1229, 1271 |
| Tru1I | TTAA | 5 cut(s) | 30, 945, 1095, 1353, 1367 |
| Tru9I | TTAA | 5 cut(s) | 30, 945, 1095, 1353, 1367 |
| TseFI | GTSAC | 2 cut(s) | 905, 1137 |
| TseI | GCWGC | 3 cut(s) | 5, 469, 1178 |
| Tsp45I | GTSAC | 2 cut(s) | 905, 1137 |
| TspDTI | ATGAA | 6 cut(s) | 66, 357, 573, 818, 909, 1382 |
| TspGWI | ACGGA | 1 cut(s) | 295 |
| Tth111I | GACNNNGTC | 2 cut(s) | 490, 1122 |
| XapI | RAATTY | 1 cut(s) | 521 |
| XceI | RCATGY | 1 cut(s) | 305 |
| XmiI | GTMKAC | 1 cut(s) | 721 |
| XspI | CTAG | 5 cut(s) | 72, 222, 693, 1439, 1452 |