Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 83 - 198 | 6e-18 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 251 |
| AcuI | CTGAAG | 1 cut(s) | 431 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 221, 378 |
| AgsI | TTSAA | 1 cut(s) | 61 |
| AjnI | CCWGG | 3 cut(s) | 220, 526, 607 |
| AleI | CACNNNNGTG | 1 cut(s) | 223 |
| AluBI | AGCT | 7 cut(s) | 79, 251, 389, 430, 451, 569, 584 |
| AluI | AGCT | 7 cut(s) | 79, 251, 389, 430, 451, 569, 584 |
| Alw21I | GWGCWC | 1 cut(s) | 127 |
| Alw26I | GTCTC | 4 cut(s) | 104, 419, 469, 474 |
| Alw44I | GTGCAC | 1 cut(s) | 123 |
| AlwI | GGATC | 1 cut(s) | 251 |
| Ama87I | CYCGRG | 1 cut(s) | 105 |
| ApaLI | GTGCAC | 1 cut(s) | 123 |
| ApeKI | GCWGC | 1 cut(s) | 569 |
| AspLEI | GCGC | 2 cut(s) | 198, 361 |
| AsuHPI | GGTGA | 1 cut(s) | 6 |
| AvaI | CYCGRG | 1 cut(s) | 105 |
| BaeGI | GKGCMC | 1 cut(s) | 127 |
| BauI | CACGAG | 1 cut(s) | 431 |
| Bbv12I | GWGCWC | 1 cut(s) | 127 |
| BbvI | GCAGC | 1 cut(s) | 556 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 356, 390 |
| BciT130I | CCWGG | 3 cut(s) | 222, 528, 609 |
| BclI | TGATCA | 2 cut(s) | 73, 406 |
| BcoDI | GTCTC | 4 cut(s) | 104, 419, 469, 474 |
| BfmI | CTRYAG | 2 cut(s) | 331, 660 |
| BglII | AGATCT | 1 cut(s) | 109 |
| BisI | GCNGC | 1 cut(s) | 570 |
| BlsI | GCNGC | 1 cut(s) | 571 |
| Bme1390I | CCNGG | 3 cut(s) | 222, 528, 609 |
| BmeT110I | CYCGRG | 1 cut(s) | 105 |
| BmrFI | CCNGG | 3 cut(s) | 222, 528, 609 |
| BpmI | CTGGAG | 1 cut(s) | 339 |
| BpuEI | CTTGAG | 2 cut(s) | 169, 665 |
| Bsa29I | ATCGAT | 1 cut(s) | 667 |
| BsaAI | YACGTR | 1 cut(s) | 68 |
| BsaI | GGTCTC | 1 cut(s) | 419 |
| BsaJI | CCNNGG | 1 cut(s) | 221 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 84, 114 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 221, 378 |
| Bse3DI | GCAATG | 1 cut(s) | 372 |
| BseBI | CCWGG | 3 cut(s) | 222, 528, 609 |
| BseCI | ATCGAT | 1 cut(s) | 667 |
| BseDI | CCNNGG | 1 cut(s) | 221 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 221, 378 |
| BseMI | GCAATG | 1 cut(s) | 372 |
| BseMII | CTCAG | 1 cut(s) | 35 |
| BseSI | GKGCMC | 1 cut(s) | 127 |
| BseXI | GCAGC | 1 cut(s) | 556 |
| BseYI | CCCAGC | 1 cut(s) | 377 |
| BsgI | GTGCAG | 1 cut(s) | 476 |
| BshVI | ATCGAT | 1 cut(s) | 667 |
| BsiHKAI | GWGCWC | 1 cut(s) | 127 |
| BsiHKCI | CYCGRG | 1 cut(s) | 105 |
| BslFI | GGGAC | 1 cut(s) | 337 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 221, 378 |
| BsmAI | GTCTC | 4 cut(s) | 104, 419, 469, 474 |
| BsmBI | CGTCTC | 1 cut(s) | 474 |
| BsmFI | GGGAC | 1 cut(s) | 337 |
| Bso31I | GGTCTC | 1 cut(s) | 419 |
| BsoBI | CYCGRG | 1 cut(s) | 105 |
| Bsp1286I | GDGCHC | 1 cut(s) | 127 |
| Bsp143I | GATC | 5 cut(s) | 73, 109, 256, 406, 664 |
| BspCNI | CTCAG | 1 cut(s) | 34 |
| BspDI | ATCGAT | 1 cut(s) | 667 |
| BspHI | TCATGA | 1 cut(s) | 574 |
| BspMAI | CTGCAG | 1 cut(s) | 664 |
| BspPI | GGATC | 1 cut(s) | 251 |
| BspTNI | GGTCTC | 1 cut(s) | 419 |
| BsrDI | GCAATG | 1 cut(s) | 372 |
| BssECI | CCNNGG | 1 cut(s) | 221 |
| BssMI | GATC | 5 cut(s) | 73, 109, 256, 406, 664 |
| BssSI | CACGAG | 1 cut(s) | 431 |
| Bst2BI | CACGAG | 1 cut(s) | 431 |
| Bst2UI | CCWGG | 3 cut(s) | 222, 528, 609 |
| Bst4CI | ACNGT | 2 cut(s) | 177, 554 |
| BstBAI | YACGTR | 1 cut(s) | 68 |
| BstC8I | GCNNGC | 2 cut(s) | 194, 459 |
| BstDEI | CTNAG | 1 cut(s) | 21 |
| BstHHI | GCGC | 2 cut(s) | 198, 361 |
| BstKTI | GATC | 5 cut(s) | 76, 112, 259, 409, 667 |
| BstMAI | GTCTC | 4 cut(s) | 104, 419, 469, 474 |
| BstMBI | GATC | 5 cut(s) | 73, 109, 256, 406, 664 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 189, 590 |
| BstNI | CCWGG | 3 cut(s) | 222, 528, 609 |
| BstNSI | RCATGY | 1 cut(s) | 196 |
| BstSCI | CCNGG | 3 cut(s) | 220, 526, 607 |
| BstSFI | CTRYAG | 2 cut(s) | 331, 660 |
| BstSLI | GKGCMC | 1 cut(s) | 127 |
| BstV1I | GCAGC | 1 cut(s) | 556 |
| BstX2I | RGATCY | 1 cut(s) | 109 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 225 |
| BstYI | RGATCY | 1 cut(s) | 109 |
| Bsu15I | ATCGAT | 1 cut(s) | 667 |
| BsuTUI | ATCGAT | 1 cut(s) | 667 |
| Cac8I | GCNNGC | 2 cut(s) | 194, 459 |
| CciI | TCATGA | 1 cut(s) | 574 |
| CfoI | GCGC | 2 cut(s) | 198, 361 |
| ClaI | ATCGAT | 1 cut(s) | 667 |
| CsiI | ACCWGGT | 2 cut(s) | 526, 607 |
| CviAII | CATG | 7 cut(s) | 164, 193, 245, 305, 344, 410, 575 |
| DdeI | CTNAG | 1 cut(s) | 21 |
| DpnI | GATC | 5 cut(s) | 75, 111, 258, 408, 666 |
| DpnII | GATC | 5 cut(s) | 73, 109, 256, 406, 664 |
| Eco31I | GGTCTC | 1 cut(s) | 419 |
| Eco57I | CTGAAG | 1 cut(s) | 431 |
| Eco88I | CYCGRG | 1 cut(s) | 105 |
| EcoRII | CCWGG | 3 cut(s) | 220, 526, 607 |
| Esp3I | CGTCTC | 1 cut(s) | 474 |
| FaeI | CATG | 7 cut(s) | 167, 196, 248, 308, 347, 413, 578 |
| FaqI | GGGAC | 1 cut(s) | 337 |
| FatI | CATG | 7 cut(s) | 163, 192, 244, 304, 343, 409, 574 |
| FbaI | TGATCA | 2 cut(s) | 73, 406 |
| Fnu4HI | GCNGC | 1 cut(s) | 570 |
| Fsp4HI | GCNGC | 1 cut(s) | 570 |
| GlaI | GCGC | 2 cut(s) | 197, 360 |
| GluI | GCNGC | 1 cut(s) | 570 |
| GsaI | CCCAGC | 1 cut(s) | 381 |
| GsuI | CTGGAG | 1 cut(s) | 339 |
| HhaI | GCGC | 2 cut(s) | 198, 361 |
| Hin1II | CATG | 7 cut(s) | 167, 196, 248, 308, 347, 413, 578 |
| Hin6I | GCGC | 2 cut(s) | 196, 359 |
| HinP1I | GCGC | 2 cut(s) | 196, 359 |
| HincII | GTYRAC | 1 cut(s) | 92 |
| HindII | GTYRAC | 1 cut(s) | 92 |
| HinfI | GANTC | 1 cut(s) | 440 |
| HphI | GGTGA | 1 cut(s) | 6 |
| Hpy166II | GTNNAC | 2 cut(s) | 92, 125 |
| Hpy188III | TCNNGA | 4 cut(s) | 107, 433, 575, 644 |
| Hpy8I | GTNNAC | 2 cut(s) | 92, 125 |
| HpyAV | CCTTC | 4 cut(s) | 27, 55, 547, 551 |
| HpyCH4III | ACNGT | 2 cut(s) | 177, 554 |
| HpyCH4IV | ACGT | 1 cut(s) | 67 |
| HpyCH4V | TGCA | 5 cut(s) | 125, 457, 478, 520, 662 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 189, 590 |
| HpyF3I | CTNAG | 1 cut(s) | 21 |
| HpySE526I | ACGT | 1 cut(s) | 67 |
| Hsp92II | CATG | 7 cut(s) | 167, 196, 248, 308, 347, 413, 578 |
| HspAI | GCGC | 2 cut(s) | 196, 359 |
| Ksp22I | TGATCA | 2 cut(s) | 73, 406 |
| Kzo9I | GATC | 5 cut(s) | 73, 109, 256, 406, 664 |
| LmnI | GCTCC | 1 cut(s) | 248 |
| Lsp1109I | GCAGC | 1 cut(s) | 556 |
| MabI | ACCWGGT | 2 cut(s) | 526, 607 |
| MaeII | ACGT | 1 cut(s) | 67 |
| MaeIII | GTNAC | 1 cut(s) | 433 |
| MalI | GATC | 5 cut(s) | 75, 111, 258, 408, 666 |
| MboI | GATC | 5 cut(s) | 73, 109, 256, 406, 664 |
| MboII | GAAGA | 3 cut(s) | 220, 509, 618 |
| MflI | RGATCY | 1 cut(s) | 109 |
| MhlI | GDGCHC | 1 cut(s) | 127 |
| MluCI | AATT | 2 cut(s) | 310, 521 |
| MnlI | CCTC | 3 cut(s) | 114, 225, 640 |
| MseI | TTAA | 2 cut(s) | 27, 230 |
| MslI | CAYNNNNRTG | 2 cut(s) | 191, 223 |
| MspA1I | CMGCKG | 1 cut(s) | 451 |
| MspR9I | CCNGG | 3 cut(s) | 222, 528, 609 |
| MvaI | CCWGG | 3 cut(s) | 222, 528, 609 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 189, 590 |
| NdeII | GATC | 5 cut(s) | 73, 109, 256, 406, 664 |
| NlaIII | CATG | 7 cut(s) | 167, 196, 248, 308, 347, 413, 578 |
| NmuCI | GTSAC | 1 cut(s) | 433 |
| NspI | RCATGY | 1 cut(s) | 196 |
| OliI | CACNNNNGTG | 1 cut(s) | 223 |
| PaeI | GCATGC | 1 cut(s) | 196 |
| PaeR7I | CTCGAG | 1 cut(s) | 105 |
| PagI | TCATGA | 1 cut(s) | 574 |
| PfeI | GAWTC | 1 cut(s) | 440 |
| PkrI | GCNGC | 1 cut(s) | 571 |
| Ppu21I | YACGTR | 1 cut(s) | 68 |
| Psp6I | CCWGG | 3 cut(s) | 220, 526, 607 |
| PspFI | CCCAGC | 1 cut(s) | 377 |
| PspGI | CCWGG | 3 cut(s) | 220, 526, 607 |
| PstI | CTGCAG | 1 cut(s) | 664 |
| PsuI | RGATCY | 1 cut(s) | 109 |
| PvuII | CAGCTG | 1 cut(s) | 451 |
| RseI | CAYNNNNRTG | 2 cut(s) | 191, 223 |
| SaqAI | TTAA | 2 cut(s) | 27, 230 |
| SatI | GCNGC | 1 cut(s) | 570 |
| Sau3AI | GATC | 5 cut(s) | 73, 109, 256, 406, 664 |
| ScrFI | CCNGG | 3 cut(s) | 222, 528, 609 |
| SduI | GDGCHC | 1 cut(s) | 127 |
| SexAI | ACCWGGT | 2 cut(s) | 526, 607 |
| SfcI | CTRYAG | 2 cut(s) | 331, 660 |
| Sfr274I | CTCGAG | 1 cut(s) | 105 |
| SlaI | CTCGAG | 1 cut(s) | 105 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 191, 223 |
| SmlI | CTYRAG | 3 cut(s) | 105, 148, 644 |
| SmoI | CTYRAG | 3 cut(s) | 105, 148, 644 |
| SphI | GCATGC | 1 cut(s) | 196 |
| Sse9I | AATT | 2 cut(s) | 310, 521 |
| StyD4I | CCNGG | 3 cut(s) | 220, 526, 607 |
| TaaI | ACNGT | 2 cut(s) | 177, 554 |
| TaiI | ACGT | 1 cut(s) | 70 |
| TaqI | TCGA | 3 cut(s) | 106, 366, 667 |
| TasI | AATT | 2 cut(s) | 310, 521 |
| TfiI | GAWTC | 1 cut(s) | 440 |
| Tru1I | TTAA | 2 cut(s) | 27, 230 |
| Tru9I | TTAA | 2 cut(s) | 27, 230 |
| TseFI | GTSAC | 1 cut(s) | 433 |
| TseI | GCWGC | 1 cut(s) | 569 |
| Tsp45I | GTSAC | 1 cut(s) | 433 |
| TspDTI | ATGAA | 6 cut(s) | 17, 43, 305, 339, 510, 579 |
| VneI | GTGCAC | 1 cut(s) | 123 |
| XceI | RCATGY | 1 cut(s) | 196 |
| XhoI | CTCGAG | 1 cut(s) | 105 |