Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 565 |
| AciI | CCGC | 3 cut(s) | 40, 524, 565 |
| AclWI | GGATC | 2 cut(s) | 368, 381 |
| AcsI | RAATTY | 1 cut(s) | 295 |
| AcuI | CTGAAG | 1 cut(s) | 342 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 246, 369 |
| AflII | CTTAAG | 1 cut(s) | 241 |
| AgsI | TTSAA | 2 cut(s) | 206, 578 |
| AjnI | CCWGG | 1 cut(s) | 173 |
| AluBI | AGCT | 4 cut(s) | 8, 26, 280, 581 |
| AluI | AGCT | 4 cut(s) | 8, 26, 280, 581 |
| AlwI | GGATC | 2 cut(s) | 368, 381 |
| Ama87I | CYCGRG | 1 cut(s) | 459 |
| AoxI | GGCC | 2 cut(s) | 116, 312 |
| ApoI | RAATTY | 1 cut(s) | 295 |
| AspS9I | GGNCC | 3 cut(s) | 383, 403, 491 |
| AsuHPI | GGTGA | 1 cut(s) | 173 |
| AvaI | CYCGRG | 1 cut(s) | 459 |
| AvaII | GGWCC | 3 cut(s) | 383, 403, 491 |
| BamHI | GGATCC | 1 cut(s) | 373 |
| BccI | CCATC | 3 cut(s) | 44, 137, 152 |
| BciT130I | CCWGG | 1 cut(s) | 175 |
| BfaI | CTAG | 6 cut(s) | 9, 122, 219, 516, 533, 625 |
| BfmI | CTRYAG | 1 cut(s) | 186 |
| BfrI | CTTAAG | 1 cut(s) | 241 |
| Bme1390I | CCNGG | 1 cut(s) | 175 |
| Bme18I | GGWCC | 3 cut(s) | 383, 403, 491 |
| BmeT110I | CYCGRG | 1 cut(s) | 459 |
| BmgT120I | GGNCC | 3 cut(s) | 383, 403, 491 |
| BmiI | GGNNCC | 4 cut(s) | 375, 404, 405, 493 |
| BmrFI | CCNGG | 1 cut(s) | 175 |
| BmrI | ACTGGG | 1 cut(s) | 378 |
| BmsI | GCATC | 1 cut(s) | 611 |
| BmuI | ACTGGG | 1 cut(s) | 378 |
| BpmI | CTGGAG | 1 cut(s) | 451 |
| BsaJI | CCNNGG | 2 cut(s) | 174, 193 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 246, 369 |
| Bse1I | ACTGG | 1 cut(s) | 373 |
| BseBI | CCWGG | 1 cut(s) | 175 |
| BseDI | CCNNGG | 2 cut(s) | 174, 193 |
| BseGI | GGATG | 1 cut(s) | 82 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 246, 369 |
| BseNI | ACTGG | 1 cut(s) | 373 |
| Bsh1236I | CGCG | 1 cut(s) | 565 |
| BshFI | GGCC | 2 cut(s) | 118, 314 |
| BsiHKCI | CYCGRG | 1 cut(s) | 459 |
| BsiSI | CCGG | 1 cut(s) | 599 |
| BslFI | GGGAC | 2 cut(s) | 389, 477 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 246, 369 |
| BsmFI | GGGAC | 2 cut(s) | 389, 477 |
| BsnI | GGCC | 2 cut(s) | 118, 314 |
| BsoBI | CYCGRG | 1 cut(s) | 459 |
| Bsp143I | GATC | 1 cut(s) | 373 |
| Bsp19I | CCATGG | 1 cut(s) | 193 |
| BspACI | CCGC | 3 cut(s) | 40, 524, 565 |
| BspANI | GGCC | 2 cut(s) | 118, 314 |
| BspFNI | CGCG | 1 cut(s) | 565 |
| BspHI | TCATGA | 1 cut(s) | 100 |
| BspLI | GGNNCC | 4 cut(s) | 375, 404, 405, 493 |
| BspPI | GGATC | 2 cut(s) | 368, 381 |
| BspTI | CTTAAG | 1 cut(s) | 241 |
| BsrI | ACTGG | 1 cut(s) | 373 |
| BssECI | CCNNGG | 2 cut(s) | 174, 193 |
| BssMI | GATC | 1 cut(s) | 373 |
| BssT1I | CCWWGG | 1 cut(s) | 193 |
| Bst2UI | CCWGG | 1 cut(s) | 175 |
| Bst4CI | ACNGT | 2 cut(s) | 304, 439 |
| BstAFI | CTTAAG | 1 cut(s) | 241 |
| BstC8I | GCNNGC | 2 cut(s) | 24, 522 |
| BstDSI | CCRYGG | 1 cut(s) | 193 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 244 |
| BstF5I | GGATG | 1 cut(s) | 82 |
| BstFNI | CGCG | 1 cut(s) | 565 |
| BstKTI | GATC | 1 cut(s) | 376 |
| BstMBI | GATC | 1 cut(s) | 373 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 521 |
| BstNI | CCWGG | 1 cut(s) | 175 |
| BstSCI | CCNGG | 1 cut(s) | 173 |
| BstSFI | CTRYAG | 1 cut(s) | 186 |
| BstUI | CGCG | 1 cut(s) | 565 |
| BstX2I | RGATCY | 1 cut(s) | 373 |
| BstYI | RGATCY | 1 cut(s) | 373 |
| BsuRI | GGCC | 2 cut(s) | 118, 314 |
| BtgI | CCRYGG | 1 cut(s) | 193 |
| BtgZI | GCGATG | 1 cut(s) | 63 |
| BtsCI | GGATG | 1 cut(s) | 82 |
| BtsIMutI | CAGTG | 1 cut(s) | 300 |
| Cac8I | GCNNGC | 2 cut(s) | 24, 522 |
| CciI | TCATGA | 1 cut(s) | 100 |
| Cfr13I | GGNCC | 3 cut(s) | 383, 403, 491 |
| CviAII | CATG | 3 cut(s) | 101, 194, 212 |
| DpnI | GATC | 1 cut(s) | 375 |
| DpnII | GATC | 1 cut(s) | 373 |
| EciI | GGCGGA | 1 cut(s) | 55 |
| Eco130I | CCWWGG | 1 cut(s) | 193 |
| Eco47I | GGWCC | 3 cut(s) | 383, 403, 491 |
| Eco57I | CTGAAG | 1 cut(s) | 342 |
| Eco88I | CYCGRG | 1 cut(s) | 459 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 244 |
| EcoO109I | RGGNCCY | 1 cut(s) | 403 |
| EcoRII | CCWGG | 1 cut(s) | 173 |
| EcoT14I | CCWWGG | 1 cut(s) | 193 |
| ErhI | CCWWGG | 1 cut(s) | 193 |
| FaeI | CATG | 3 cut(s) | 104, 197, 215 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 391, 423 |
| FaqI | GGGAC | 2 cut(s) | 389, 477 |
| FatI | CATG | 3 cut(s) | 100, 193, 211 |
| FauI | CCCGC | 1 cut(s) | 558 |
| FokI | GGATG | 1 cut(s) | 89 |
| FspBI | CTAG | 6 cut(s) | 9, 122, 219, 516, 533, 625 |
| GsuI | CTGGAG | 1 cut(s) | 451 |
| HaeIII | GGCC | 2 cut(s) | 118, 314 |
| HapII | CCGG | 1 cut(s) | 599 |
| Hin1II | CATG | 3 cut(s) | 104, 197, 215 |
| HincII | GTYRAC | 1 cut(s) | 421 |
| HindII | GTYRAC | 1 cut(s) | 421 |
| HindIII | AAGCTT | 1 cut(s) | 278 |
| HinfI | GANTC | 4 cut(s) | 85, 104, 164, 267 |
| HpaII | CCGG | 1 cut(s) | 599 |
| HphI | GGTGA | 1 cut(s) | 173 |
| Hpy166II | GTNNAC | 1 cut(s) | 421 |
| Hpy188I | TCNGA | 3 cut(s) | 148, 225, 607 |
| Hpy188III | TCNNGA | 1 cut(s) | 101 |
| Hpy8I | GTNNAC | 1 cut(s) | 421 |
| HpyAV | CCTTC | 1 cut(s) | 613 |
| HpyCH4III | ACNGT | 2 cut(s) | 304, 439 |
| HpyCH4V | TGCA | 2 cut(s) | 22, 499 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 521 |
| Hsp92II | CATG | 3 cut(s) | 104, 197, 215 |
| KflI | GGGWCCC | 1 cut(s) | 403 |
| Kzo9I | GATC | 1 cut(s) | 373 |
| LmnI | GCTCC | 1 cut(s) | 586 |
| LpnPI | CCDG | 9 cut(s) | 12, 27, 160, 187, 354, 415, 474, 554, 612 |
| LweI | GCATC | 1 cut(s) | 611 |
| MaeI | CTAG | 6 cut(s) | 9, 122, 219, 516, 533, 625 |
| MalI | GATC | 1 cut(s) | 375 |
| MboI | GATC | 1 cut(s) | 373 |
| MflI | RGATCY | 1 cut(s) | 373 |
| MluCI | AATT | 2 cut(s) | 295, 445 |
| MlyI | GAGTC | 1 cut(s) | 261 |
| MmeI | TCCRAC | 1 cut(s) | 479 |
| MnlI | CCTC | 7 cut(s) | 67, 129, 132, 136, 250, 373, 426 |
| MseI | TTAA | 2 cut(s) | 242, 470 |
| MspCI | CTTAAG | 1 cut(s) | 241 |
| MspI | CCGG | 1 cut(s) | 599 |
| MspR9I | CCNGG | 1 cut(s) | 175 |
| MvaI | CCWGG | 1 cut(s) | 175 |
| MvnI | CGCG | 1 cut(s) | 565 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 521 |
| NcoI | CCATGG | 1 cut(s) | 193 |
| NdeII | GATC | 1 cut(s) | 373 |
| NlaIII | CATG | 3 cut(s) | 104, 197, 215 |
| NlaIV | GGNNCC | 4 cut(s) | 375, 404, 405, 493 |
| NmeAIII | GCCGAG | 1 cut(s) | 94 |
| PagI | TCATGA | 1 cut(s) | 100 |
| PfeI | GAWTC | 3 cut(s) | 85, 104, 164 |
| PleI | GAGTC | 1 cut(s) | 261 |
| PpsI | GAGTC | 1 cut(s) | 261 |
| PpuMI | RGGWCCY | 1 cut(s) | 403 |
| Psp5II | RGGWCCY | 1 cut(s) | 403 |
| Psp6I | CCWGG | 1 cut(s) | 173 |
| PspGI | CCWGG | 1 cut(s) | 173 |
| PspN4I | GGNNCC | 4 cut(s) | 375, 404, 405, 493 |
| PspPI | GGNCC | 3 cut(s) | 383, 403, 491 |
| PspPPI | RGGWCCY | 1 cut(s) | 403 |
| PsuI | RGATCY | 1 cut(s) | 373 |
| SaqAI | TTAA | 2 cut(s) | 242, 470 |
| Sau3AI | GATC | 1 cut(s) | 373 |
| Sau96I | GGNCC | 3 cut(s) | 383, 403, 491 |
| SchI | GAGTC | 1 cut(s) | 261 |
| ScrFI | CCNGG | 1 cut(s) | 175 |
| SfaNI | GCATC | 1 cut(s) | 611 |
| SfcI | CTRYAG | 1 cut(s) | 186 |
| SinI | GGWCC | 3 cut(s) | 383, 403, 491 |
| SmlI | CTYRAG | 1 cut(s) | 241 |
| SmoI | CTYRAG | 1 cut(s) | 241 |
| Sse9I | AATT | 2 cut(s) | 295, 445 |
| SsiI | CCGC | 3 cut(s) | 40, 524, 565 |
| SspI | AATATT | 1 cut(s) | 67 |
| SspMI | CTAG | 6 cut(s) | 9, 122, 219, 516, 533, 625 |
| StyD4I | CCNGG | 1 cut(s) | 173 |
| StyI | CCWWGG | 1 cut(s) | 193 |
| TaaI | ACNGT | 2 cut(s) | 304, 439 |
| TaqII | GACCGA | 1 cut(s) | 332 |
| TasI | AATT | 2 cut(s) | 295, 445 |
| TfiI | GAWTC | 3 cut(s) | 85, 104, 164 |
| Tru1I | TTAA | 2 cut(s) | 242, 470 |
| Tru9I | TTAA | 2 cut(s) | 242, 470 |
| TscAI | CASTG | 1 cut(s) | 307 |
| TspGWI | ACGGA | 1 cut(s) | 366 |
| TspRI | CASTG | 1 cut(s) | 307 |
| Vha464I | CTTAAG | 1 cut(s) | 241 |
| VpaK11BI | GGWCC | 3 cut(s) | 383, 403, 491 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 244 |
| XapI | RAATTY | 1 cut(s) | 295 |
| XspI | CTAG | 6 cut(s) | 9, 122, 219, 516, 533, 625 |