Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 14 - 133 | 1.1e-18 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 205, 228 |
| AccII | CGCG | 1 cut(s) | 25 |
| AciI | CCGC | 2 cut(s) | 23, 25 |
| AcsI | RAATTY | 2 cut(s) | 283, 351 |
| AfaI | GTAC | 2 cut(s) | 326, 399 |
| AgsI | TTSAA | 1 cut(s) | 341 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 66, 98 |
| AluBI | AGCT | 2 cut(s) | 188, 394 |
| AluI | AGCT | 2 cut(s) | 188, 394 |
| Alw26I | GTCTC | 1 cut(s) | 22 |
| ApeKI | GCWGC | 2 cut(s) | 122, 260 |
| ApoI | RAATTY | 2 cut(s) | 283, 351 |
| AseI | ATTAAT | 1 cut(s) | 162 |
| AsuHPI | GGTGA | 1 cut(s) | 83 |
| BbsI | GAAGAC | 1 cut(s) | 185 |
| BbvI | GCAGC | 2 cut(s) | 134, 247 |
| BccI | CCATC | 1 cut(s) | 41 |
| BceAI | ACGGC | 1 cut(s) | 351 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 345, 379 |
| BcoDI | GTCTC | 1 cut(s) | 22 |
| BfaI | CTAG | 3 cut(s) | 57, 132, 406 |
| BfmI | CTRYAG | 1 cut(s) | 345 |
| BisI | GCNGC | 2 cut(s) | 123, 261 |
| BlsI | GCNGC | 2 cut(s) | 124, 262 |
| BmcAI | AGTACT | 1 cut(s) | 326 |
| BpiI | GAAGAC | 1 cut(s) | 185 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 227, 259 |
| BsaJI | CCNNGG | 2 cut(s) | 23, 211 |
| Bse3DI | GCAATG | 1 cut(s) | 126 |
| BseDI | CCNNGG | 2 cut(s) | 23, 211 |
| BseGI | GGATG | 1 cut(s) | 298 |
| BseMI | GCAATG | 1 cut(s) | 126 |
| BseXI | GCAGC | 2 cut(s) | 134, 247 |
| BsgI | GTGCAG | 1 cut(s) | 246 |
| Bsh1236I | CGCG | 1 cut(s) | 25 |
| BsmAI | GTCTC | 1 cut(s) | 22 |
| BspACI | CCGC | 2 cut(s) | 23, 25 |
| BspFNI | CGCG | 1 cut(s) | 25 |
| BsrDI | GCAATG | 1 cut(s) | 126 |
| BssECI | CCNNGG | 2 cut(s) | 23, 211 |
| BssNAI | GTATAC | 1 cut(s) | 206 |
| BssT1I | CCWWGG | 1 cut(s) | 211 |
| Bst1107I | GTATAC | 1 cut(s) | 206 |
| Bst4CI | ACNGT | 1 cut(s) | 334 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 128 |
| BstDSI | CCRYGG | 1 cut(s) | 23 |
| BstF5I | GGATG | 1 cut(s) | 298 |
| BstFNI | CGCG | 1 cut(s) | 25 |
| BstMAI | GTCTC | 1 cut(s) | 22 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 128, 185 |
| BstSFI | CTRYAG | 1 cut(s) | 345 |
| BstUI | CGCG | 1 cut(s) | 25 |
| BstV1I | GCAGC | 2 cut(s) | 134, 247 |
| BstV2I | GAAGAC | 1 cut(s) | 185 |
| BstZ17I | GTATAC | 1 cut(s) | 206 |
| BtgI | CCRYGG | 1 cut(s) | 23 |
| BtsCI | GGATG | 1 cut(s) | 298 |
| Cfr42I | CCGCGG | 1 cut(s) | 26 |
| Csp6I | GTAC | 2 cut(s) | 325, 398 |
| CviAII | CATG | 1 cut(s) | 112 |
| CviJI | RGCY | 5 cut(s) | 65, 125, 158, 188, 394 |
| CviKI_1 | RGCY | 5 cut(s) | 65, 125, 158, 188, 394 |
| CviQI | GTAC | 2 cut(s) | 325, 398 |
| Eco130I | CCWWGG | 1 cut(s) | 211 |
| EcoT14I | CCWWGG | 1 cut(s) | 211 |
| ErhI | CCWWGG | 1 cut(s) | 211 |
| FaeI | CATG | 1 cut(s) | 115 |
| FaiI | YATR | 6 cut(s) | 113, 147, 167, 206, 360, 390 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 311, 343 |
| FatI | CATG | 1 cut(s) | 111 |
| FblI | GTMKAC | 2 cut(s) | 205, 228 |
| Fnu4HI | GCNGC | 2 cut(s) | 123, 261 |
| FokI | GGATG | 1 cut(s) | 305 |
| Fsp4HI | GCNGC | 2 cut(s) | 123, 261 |
| FspBI | CTAG | 3 cut(s) | 57, 132, 406 |
| GluI | GCNGC | 2 cut(s) | 123, 261 |
| Hin1II | CATG | 1 cut(s) | 115 |
| HindIII | AAGCTT | 1 cut(s) | 392 |
| HinfI | GANTC | 2 cut(s) | 30, 242 |
| HphI | GGTGA | 1 cut(s) | 83 |
| Hpy166II | GTNNAC | 2 cut(s) | 206, 229 |
| Hpy188III | TCNNGA | 1 cut(s) | 57 |
| Hpy8I | GTNNAC | 2 cut(s) | 206, 229 |
| HpyAV | CCTTC | 2 cut(s) | 68, 260 |
| HpyCH4III | ACNGT | 1 cut(s) | 334 |
| HpyCH4V | TGCA | 3 cut(s) | 122, 263, 386 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 128, 185 |
| Hsp92II | CATG | 1 cut(s) | 115 |
| KspI | CCGCGG | 1 cut(s) | 26 |
| LpnPI | CCDG | 1 cut(s) | 174 |
| Lsp1109I | GCAGC | 2 cut(s) | 134, 247 |
| MaeI | CTAG | 3 cut(s) | 57, 132, 406 |
| MboII | GAAGA | 2 cut(s) | 185, 188 |
| MluCI | AATT | 3 cut(s) | 255, 283, 351 |
| MlyI | GAGTC | 2 cut(s) | 24, 236 |
| MmeI | TCCRAC | 1 cut(s) | 197 |
| MnlI | CCTC | 5 cut(s) | 30, 71, 163, 169, 268 |
| MseI | TTAA | 4 cut(s) | 96, 162, 309, 329 |
| MspA1I | CMGCKG | 1 cut(s) | 25 |
| MvnI | CGCG | 1 cut(s) | 25 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 128, 185 |
| NlaIII | CATG | 1 cut(s) | 115 |
| NmeAIII | GCCGAG | 1 cut(s) | 134 |
| PkrI | GCNGC | 2 cut(s) | 124, 262 |
| PleI | GAGTC | 2 cut(s) | 24, 236 |
| PpsI | GAGTC | 2 cut(s) | 24, 236 |
| PshBI | ATTAAT | 1 cut(s) | 162 |
| RsaI | GTAC | 2 cut(s) | 326, 399 |
| RsaNI | GTAC | 2 cut(s) | 325, 398 |
| SacII | CCGCGG | 1 cut(s) | 26 |
| SaqAI | TTAA | 4 cut(s) | 96, 162, 309, 329 |
| SatI | GCNGC | 2 cut(s) | 123, 261 |
| ScaI | AGTACT | 1 cut(s) | 326 |
| SchI | GAGTC | 2 cut(s) | 24, 236 |
| SetI | ASST | 6 cut(s) | 82, 174, 190, 217, 396, 403 |
| SfcI | CTRYAG | 1 cut(s) | 345 |
| Sfr303I | CCGCGG | 1 cut(s) | 26 |
| SgrBI | CCGCGG | 1 cut(s) | 26 |
| Sse9I | AATT | 3 cut(s) | 255, 283, 351 |
| SsiI | CCGC | 2 cut(s) | 23, 25 |
| SspMI | CTAG | 3 cut(s) | 57, 132, 406 |
| StyI | CCWWGG | 1 cut(s) | 211 |
| TaaI | ACNGT | 1 cut(s) | 334 |
| TaqI | TCGA | 1 cut(s) | 355 |
| TasI | AATT | 3 cut(s) | 255, 283, 351 |
| TatI | WGTACW | 1 cut(s) | 324 |
| Tru1I | TTAA | 4 cut(s) | 96, 162, 309, 329 |
| Tru9I | TTAA | 4 cut(s) | 96, 162, 309, 329 |
| TseI | GCWGC | 2 cut(s) | 122, 260 |
| TspGWI | ACGGA | 1 cut(s) | 236 |
| VspI | ATTAAT | 1 cut(s) | 162 |
| XapI | RAATTY | 2 cut(s) | 283, 351 |
| XbaI | TCTAGA | 1 cut(s) | 56 |
| XmiI | GTMKAC | 2 cut(s) | 205, 228 |
| XspI | CTAG | 3 cut(s) | 57, 132, 406 |
| ZrmI | AGTACT | 1 cut(s) | 326 |