Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 495 |
| Acc36I | ACCTGC | 1 cut(s) | 391 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 935 |
| AccBSI | CCGCTC | 1 cut(s) | 316 |
| AccI | GTMKAC | 1 cut(s) | 670 |
| AciI | CCGC | 2 cut(s) | 316, 983 |
| AclWI | GGATC | 3 cut(s) | 256, 269, 363 |
| AcoI | YGGCCR | 4 cut(s) | 33, 87, 229, 520 |
| AfaI | GTAC | 4 cut(s) | 857, 994, 1138, 1274 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 165, 935, 989, 1168 |
| AgsI | TTSAA | 4 cut(s) | 10, 655, 952, 978 |
| AhlI | ACTAGT | 1 cut(s) | 82 |
| AjnI | CCWGG | 1 cut(s) | 740 |
| Alw21I | GWGCWC | 3 cut(s) | 621, 760, 1152 |
| Alw26I | GTCTC | 1 cut(s) | 277 |
| Alw44I | GTGCAC | 1 cut(s) | 617 |
| AlwI | GGATC | 3 cut(s) | 256, 269, 363 |
| Ama87I | CYCGRG | 1 cut(s) | 813 |
| AoxI | GGCC | 4 cut(s) | 33, 87, 229, 520 |
| ApaLI | GTGCAC | 1 cut(s) | 617 |
| ApeKI | GCWGC | 3 cut(s) | 362, 641, 1130 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 293, 325 |
| AseI | ATTAAT | 2 cut(s) | 240, 333 |
| AspS9I | GGNCC | 3 cut(s) | 403, 581, 1081 |
| AsuHPI | GGTGA | 2 cut(s) | 158, 236 |
| AsuNHI | GCTAGC | 1 cut(s) | 1196 |
| AvaI | CYCGRG | 1 cut(s) | 813 |
| AvaII | GGWCC | 3 cut(s) | 403, 581, 1081 |
| BaeGI | GKGCMC | 1 cut(s) | 621 |
| BalI | TGGCCA | 4 cut(s) | 35, 89, 231, 522 |
| BamHI | GGATCC | 1 cut(s) | 261 |
| BanII | GRGCYC | 1 cut(s) | 1152 |
| Bbv12I | GWGCWC | 3 cut(s) | 621, 760, 1152 |
| BbvI | GCAGC | 3 cut(s) | 374, 628, 1117 |
| BccI | CCATC | 7 cut(s) | 221, 240, 285, 531, 538, 929, 953 |
| BceAI | ACGGC | 1 cut(s) | 504 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 851, 885 |
| BciT130I | CCWGG | 1 cut(s) | 742 |
| BclI | TGATCA | 2 cut(s) | 844, 1104 |
| BcoDI | GTCTC | 1 cut(s) | 277 |
| BcuI | ACTAGT | 1 cut(s) | 82 |
| BfaI | CTAG | 6 cut(s) | 83, 576, 585, 693, 1193, 1197 |
| BfmI | CTRYAG | 5 cut(s) | 674, 1045, 1179, 1186, 1201 |
| BfuAI | ACCTGC | 1 cut(s) | 391 |
| BglII | AGATCT | 1 cut(s) | 747 |
| BisI | GCNGC | 3 cut(s) | 363, 642, 1131 |
| BlsI | GCNGC | 3 cut(s) | 364, 643, 1132 |
| Bme1390I | CCNGG | 1 cut(s) | 742 |
| Bme18I | GGWCC | 3 cut(s) | 403, 581, 1081 |
| BmeT110I | CYCGRG | 1 cut(s) | 813 |
| BmgT120I | GGNCC | 3 cut(s) | 403, 581, 1081 |
| BmiI | GGNNCC | 3 cut(s) | 263, 964, 1082 |
| BmrFI | CCNGG | 1 cut(s) | 742 |
| BmsI | GCATC | 2 cut(s) | 795, 1252 |
| BmtI | GCTAGC | 1 cut(s) | 1200 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1241, 1273 |
| BpmI | CTGGAG | 2 cut(s) | 912, 1230 |
| BpuEI | CTTGAG | 2 cut(s) | 479, 1100 |
| BsaBI | GATNNNNATC | 2 cut(s) | 231, 1281 |
| BsaJI | CCNNGG | 2 cut(s) | 741, 1018 |
| BsaWI | WCCGGW | 1 cut(s) | 190 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 208, 238, 242, 272 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 165, 935, 989, 1168 |
| Bse1I | ACTGG | 2 cut(s) | 923, 929 |
| Bse3DI | GCAATG | 1 cut(s) | 1029 |
| Bse8I | GATNNNNATC | 2 cut(s) | 231, 1281 |
| BseBI | CCWGG | 1 cut(s) | 742 |
| BseDI | CCNNGG | 2 cut(s) | 741, 1018 |
| BseGI | GGATG | 6 cut(s) | 122, 259, 715, 810, 964, 1267 |
| BseJI | GATNNNNATC | 2 cut(s) | 231, 1281 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 165, 935, 989, 1168 |
| BseMI | GCAATG | 1 cut(s) | 1029 |
| BseMII | CTCAG | 1 cut(s) | 66 |
| BseNI | ACTGG | 2 cut(s) | 923, 929 |
| BseRI | GAGGAG | 2 cut(s) | 184, 915 |
| BseSI | GKGCMC | 1 cut(s) | 621 |
| BseXI | GCAGC | 3 cut(s) | 374, 628, 1117 |
| BshFI | GGCC | 4 cut(s) | 35, 89, 231, 522 |
| BsiHKAI | GWGCWC | 3 cut(s) | 621, 760, 1152 |
| BsiHKCI | CYCGRG | 1 cut(s) | 813 |
| BsiSI | CCGG | 1 cut(s) | 191 |
| BslFI | GGGAC | 2 cut(s) | 1094, 1145 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 165, 935, 989, 1168 |
| BsmAI | GTCTC | 1 cut(s) | 277 |
| BsmFI | GGGAC | 2 cut(s) | 1094, 1145 |
| BsnI | GGCC | 4 cut(s) | 35, 89, 231, 522 |
| BsoBI | CYCGRG | 1 cut(s) | 813 |
| Bsp1286I | GDGCHC | 3 cut(s) | 621, 760, 1152 |
| Bsp1407I | TGTACA | 1 cut(s) | 855 |
| Bsp143I | GATC | 7 cut(s) | 261, 355, 439, 747, 844, 899, 1104 |
| Bsp19I | CCATGG | 1 cut(s) | 1018 |
| BspACI | CCGC | 2 cut(s) | 316, 983 |
| BspANI | GGCC | 4 cut(s) | 35, 89, 231, 522 |
| BspCNI | CTCAG | 1 cut(s) | 67 |
| BspHI | TCATGA | 1 cut(s) | 436 |
| BspLI | GGNNCC | 3 cut(s) | 263, 964, 1082 |
| BspMAI | CTGCAG | 1 cut(s) | 678 |
| BspMI | ACCTGC | 1 cut(s) | 391 |
| BspOI | GCTAGC | 1 cut(s) | 1200 |
| BspPI | GGATC | 3 cut(s) | 256, 269, 363 |
| BsrBI | CCGCTC | 1 cut(s) | 316 |
| BsrDI | GCAATG | 1 cut(s) | 1029 |
| BsrGI | TGTACA | 1 cut(s) | 855 |
| BsrI | ACTGG | 2 cut(s) | 923, 929 |
| BssECI | CCNNGG | 2 cut(s) | 741, 1018 |
| BssMI | GATC | 7 cut(s) | 261, 355, 439, 747, 844, 899, 1104 |
| BssT1I | CCWWGG | 1 cut(s) | 1018 |
| Bst2UI | CCWGG | 1 cut(s) | 742 |
| Bst4CI | ACNGT | 2 cut(s) | 447, 1075 |
| Bst6I | CTCTTC | 1 cut(s) | 460 |
| BstAUI | TGTACA | 1 cut(s) | 855 |
| BstC8I | GCNNGC | 5 cut(s) | 21, 810, 864, 1036, 1198 |
| BstDEI | CTNAG | 3 cut(s) | 75, 709, 788 |
| BstDSI | CCRYGG | 1 cut(s) | 1018 |
| BstF5I | GGATG | 6 cut(s) | 122, 259, 715, 810, 964, 1267 |
| BstKTI | GATC | 7 cut(s) | 264, 358, 442, 750, 847, 902, 1107 |
| BstMAI | GTCTC | 1 cut(s) | 277 |
| BstMBI | GATC | 7 cut(s) | 261, 355, 439, 747, 844, 899, 1104 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 371 |
| BstNI | CCWGG | 1 cut(s) | 742 |
| BstNSI | RCATGY | 2 cut(s) | 23, 862 |
| BstSCI | CCNGG | 1 cut(s) | 740 |
| BstSFI | CTRYAG | 5 cut(s) | 674, 1045, 1179, 1186, 1201 |
| BstSLI | GKGCMC | 1 cut(s) | 621 |
| BstV1I | GCAGC | 3 cut(s) | 374, 628, 1117 |
| BstX2I | RGATCY | 2 cut(s) | 261, 747 |
| BstYI | RGATCY | 2 cut(s) | 261, 747 |
| BsuRI | GGCC | 4 cut(s) | 35, 89, 231, 522 |
| BtgI | CCRYGG | 1 cut(s) | 1018 |
| BtsCI | GGATG | 6 cut(s) | 122, 259, 715, 810, 964, 1267 |
| BtsI | GCAGTG | 1 cut(s) | 683 |
| BtsIMutI | CAGTG | 2 cut(s) | 683, 916 |
| BveI | ACCTGC | 1 cut(s) | 391 |
| Cac8I | GCNNGC | 5 cut(s) | 21, 810, 864, 1036, 1198 |
| CciI | TCATGA | 1 cut(s) | 436 |
| Cfr13I | GGNCC | 3 cut(s) | 403, 581, 1081 |
| Csp6I | GTAC | 4 cut(s) | 856, 993, 1137, 1273 |
| CviQI | GTAC | 4 cut(s) | 856, 993, 1137, 1273 |
| DdeI | CTNAG | 3 cut(s) | 75, 709, 788 |
| DpnI | GATC | 7 cut(s) | 263, 357, 441, 749, 846, 901, 1106 |
| DpnII | GATC | 7 cut(s) | 261, 355, 439, 747, 844, 899, 1104 |
| DraI | TTTAAA | 2 cut(s) | 100, 945 |
| EaeI | YGGCCR | 4 cut(s) | 33, 87, 229, 520 |
| Eam1104I | CTCTTC | 1 cut(s) | 460 |
| EarI | CTCTTC | 1 cut(s) | 460 |
| Ecl136II | GAGCTC | 1 cut(s) | 1150 |
| Eco130I | CCWWGG | 1 cut(s) | 1018 |
| Eco24I | GRGCYC | 1 cut(s) | 1152 |
| Eco47I | GGWCC | 3 cut(s) | 403, 581, 1081 |
| Eco53kI | GAGCTC | 1 cut(s) | 1150 |
| Eco88I | CYCGRG | 1 cut(s) | 813 |
| EcoICRI | GAGCTC | 1 cut(s) | 1150 |
| EcoO109I | RGGNCCY | 3 cut(s) | 403, 581, 1081 |
| EcoRII | CCWGG | 1 cut(s) | 740 |
| EcoT14I | CCWWGG | 1 cut(s) | 1018 |
| EcoT38I | GRGCYC | 1 cut(s) | 1152 |
| ErhI | CCWWGG | 1 cut(s) | 1018 |
| FaqI | GGGAC | 2 cut(s) | 1094, 1145 |
| FauI | CCCGC | 2 cut(s) | 309, 990 |
| FbaI | TGATCA | 2 cut(s) | 844, 1104 |
| FblI | GTMKAC | 1 cut(s) | 670 |
| Fnu4HI | GCNGC | 3 cut(s) | 363, 642, 1131 |
| FokI | GGATG | 6 cut(s) | 109, 266, 702, 817, 971, 1274 |
| FriOI | GRGCYC | 1 cut(s) | 1152 |
| Fsp4HI | GCNGC | 3 cut(s) | 363, 642, 1131 |
| FspBI | CTAG | 6 cut(s) | 83, 576, 585, 693, 1193, 1197 |
| GluI | GCNGC | 3 cut(s) | 363, 642, 1131 |
| GsuI | CTGGAG | 2 cut(s) | 912, 1230 |
| HaeIII | GGCC | 4 cut(s) | 35, 89, 231, 522 |
| HapII | CCGG | 1 cut(s) | 191 |
| HincII | GTYRAC | 1 cut(s) | 301 |
| HindII | GTYRAC | 1 cut(s) | 301 |
| HindIII | AAGCTT | 1 cut(s) | 455 |
| HinfI | GANTC | 7 cut(s) | 77, 421, 549, 922, 1120, 1211, 1277 |
| HpaII | CCGG | 1 cut(s) | 191 |
| HphI | GGTGA | 2 cut(s) | 158, 236 |
| Hpy166II | GTNNAC | 4 cut(s) | 149, 301, 619, 671 |
| Hpy188I | TCNGA | 1 cut(s) | 1261 |
| Hpy188III | TCNNGA | 6 cut(s) | 291, 437, 484, 693, 1117, 1247 |
| Hpy8I | GTNNAC | 4 cut(s) | 149, 301, 619, 671 |
| HpyAV | CCTTC | 6 cut(s) | 136, 165, 661, 790, 976, 984 |
| HpyCH4III | ACNGT | 2 cut(s) | 447, 1075 |
| HpyCH4V | TGCA | 6 cut(s) | 19, 362, 619, 676, 862, 1133 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 371 |
| HpyF3I | CTNAG | 3 cut(s) | 75, 709, 788 |
| Ksp22I | TGATCA | 2 cut(s) | 844, 1104 |
| Kzo9I | GATC | 7 cut(s) | 261, 355, 439, 747, 844, 899, 1104 |
| LmnI | GCTCC | 3 cut(s) | 171, 755, 1249 |
| Lsp1109I | GCAGC | 3 cut(s) | 374, 628, 1117 |
| LweI | GCATC | 2 cut(s) | 795, 1252 |
| MaeI | CTAG | 6 cut(s) | 83, 576, 585, 693, 1193, 1197 |
| MaeIII | GTNAC | 1 cut(s) | 78 |
| MalI | GATC | 7 cut(s) | 263, 357, 441, 749, 846, 901, 1106 |
| MbiI | CCGCTC | 1 cut(s) | 316 |
| MboI | GATC | 7 cut(s) | 261, 355, 439, 747, 844, 899, 1104 |
| MboII | GAAGA | 1 cut(s) | 477 |
| MflI | RGATCY | 2 cut(s) | 261, 747 |
| MhlI | GDGCHC | 3 cut(s) | 621, 760, 1152 |
| MlsI | TGGCCA | 4 cut(s) | 35, 89, 231, 522 |
| MluNI | TGGCCA | 4 cut(s) | 35, 89, 231, 522 |
| MlyI | GAGTC | 5 cut(s) | 86, 430, 558, 916, 1114 |
| MmeI | TCCRAC | 1 cut(s) | 773 |
| Mox20I | TGGCCA | 4 cut(s) | 35, 89, 231, 522 |
| MscI | TGGCCA | 4 cut(s) | 35, 89, 231, 522 |
| MseI | TTAA | 8 cut(s) | 99, 176, 240, 333, 944, 1065, 1173, 1239 |
| MslI | CAYNNNNRTG | 1 cut(s) | 18 |
| Msp20I | TGGCCA | 4 cut(s) | 35, 89, 231, 522 |
| MspA1I | CMGCKG | 1 cut(s) | 365 |
| MspI | CCGG | 1 cut(s) | 191 |
| MspR9I | CCNGG | 1 cut(s) | 742 |
| MvaI | CCWGG | 1 cut(s) | 742 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 371 |
| NcoI | CCATGG | 1 cut(s) | 1018 |
| NdeII | GATC | 7 cut(s) | 261, 355, 439, 747, 844, 899, 1104 |
| NheI | GCTAGC | 1 cut(s) | 1196 |
| NlaIV | GGNNCC | 3 cut(s) | 263, 964, 1082 |
| NmuCI | GTSAC | 1 cut(s) | 78 |
| NspI | RCATGY | 2 cut(s) | 23, 862 |
| PaeI | GCATGC | 1 cut(s) | 23 |
| PagI | TCATGA | 1 cut(s) | 436 |
| PfeI | GAWTC | 2 cut(s) | 1211, 1277 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 935 |
| PkrI | GCNGC | 3 cut(s) | 364, 643, 1132 |
| PleI | GAGTC | 5 cut(s) | 85, 429, 557, 916, 1114 |
| PpsI | GAGTC | 5 cut(s) | 85, 429, 557, 916, 1114 |
| PpuMI | RGGWCCY | 3 cut(s) | 403, 581, 1081 |
| PshBI | ATTAAT | 2 cut(s) | 240, 333 |
| PsiI | TTATAA | 1 cut(s) | 495 |
| Psp124BI | GAGCTC | 1 cut(s) | 1152 |
| Psp5II | RGGWCCY | 3 cut(s) | 403, 581, 1081 |
| Psp6I | CCWGG | 1 cut(s) | 740 |
| PspGI | CCWGG | 1 cut(s) | 740 |
| PspN4I | GGNNCC | 3 cut(s) | 263, 964, 1082 |
| PspPI | GGNCC | 3 cut(s) | 403, 581, 1081 |
| PspPPI | RGGWCCY | 3 cut(s) | 403, 581, 1081 |
| PstI | CTGCAG | 1 cut(s) | 678 |
| PsuI | RGATCY | 2 cut(s) | 261, 747 |
| PvuII | CAGCTG | 1 cut(s) | 365 |
| RsaI | GTAC | 4 cut(s) | 857, 994, 1138, 1274 |
| RsaNI | GTAC | 4 cut(s) | 856, 993, 1137, 1273 |
| RseI | CAYNNNNRTG | 1 cut(s) | 18 |
| SacI | GAGCTC | 1 cut(s) | 1152 |
| SaqAI | TTAA | 8 cut(s) | 99, 176, 240, 333, 944, 1065, 1173, 1239 |
| SatI | GCNGC | 3 cut(s) | 363, 642, 1131 |
| Sau3AI | GATC | 7 cut(s) | 261, 355, 439, 747, 844, 899, 1104 |
| Sau96I | GGNCC | 3 cut(s) | 403, 581, 1081 |
| SchI | GAGTC | 5 cut(s) | 86, 430, 558, 916, 1114 |
| ScrFI | CCNGG | 1 cut(s) | 742 |
| SduI | GDGCHC | 3 cut(s) | 621, 760, 1152 |
| SfaNI | GCATC | 2 cut(s) | 795, 1252 |
| SfcI | CTRYAG | 5 cut(s) | 674, 1045, 1179, 1186, 1201 |
| SinI | GGWCC | 3 cut(s) | 403, 581, 1081 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 18 |
| SmlI | CTYRAG | 2 cut(s) | 458, 1115 |
| SmoI | CTYRAG | 2 cut(s) | 458, 1115 |
| SpeI | ACTAGT | 1 cut(s) | 82 |
| SphI | GCATGC | 1 cut(s) | 23 |
| SsiI | CCGC | 2 cut(s) | 316, 983 |
| SspI | AATATT | 1 cut(s) | 244 |
| SspMI | CTAG | 6 cut(s) | 83, 576, 585, 693, 1193, 1197 |
| SstI | GAGCTC | 1 cut(s) | 1152 |
| StyD4I | CCNGG | 1 cut(s) | 740 |
| StyI | CCWWGG | 1 cut(s) | 1018 |
| TaaI | ACNGT | 2 cut(s) | 447, 1075 |
| TaqI | TCGA | 4 cut(s) | 44, 58, 292, 442 |
| TaqII | GACCGA | 3 cut(s) | 422, 861, 912 |
| TatI | WGTACW | 1 cut(s) | 855 |
| TfiI | GAWTC | 2 cut(s) | 1211, 1277 |
| Tru1I | TTAA | 8 cut(s) | 99, 176, 240, 333, 944, 1065, 1173, 1239 |
| Tru9I | TTAA | 8 cut(s) | 99, 176, 240, 333, 944, 1065, 1173, 1239 |
| TscAI | CASTG | 2 cut(s) | 683, 923 |
| TseFI | GTSAC | 1 cut(s) | 78 |
| TseI | GCWGC | 3 cut(s) | 362, 641, 1130 |
| Tsp45I | GTSAC | 1 cut(s) | 78 |
| TspDTI | ATGAA | 6 cut(s) | 111, 153, 359, 1018, 1224, 1243 |
| TspGWI | ACGGA | 2 cut(s) | 708, 1154 |
| TspRI | CASTG | 2 cut(s) | 683, 923 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 935 |
| VneI | GTGCAC | 1 cut(s) | 617 |
| VpaK11BI | GGWCC | 3 cut(s) | 403, 581, 1081 |
| VspI | ATTAAT | 2 cut(s) | 240, 333 |
| XbaI | TCTAGA | 1 cut(s) | 692 |
| XceI | RCATGY | 2 cut(s) | 23, 862 |
| XmiI | GTMKAC | 1 cut(s) | 670 |
| XspI | CTAG | 6 cut(s) | 83, 576, 585, 693, 1193, 1197 |