Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 950 |
| Acc65I | GGTACC | 1 cut(s) | 198 |
| AccB1I | GGYRCC | 1 cut(s) | 198 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 773 |
| AccI | GTMKAC | 1 cut(s) | 587 |
| AccII | CGCG | 1 cut(s) | 936 |
| AciI | CCGC | 3 cut(s) | 122, 195, 917 |
| AclWI | GGATC | 1 cut(s) | 393 |
| AcsI | RAATTY | 1 cut(s) | 117 |
| AcuI | CTGAAG | 1 cut(s) | 95 |
| AdeI | CACNNNGTG | 2 cut(s) | 260, 773 |
| AfaI | GTAC | 7 cut(s) | 182, 200, 303, 315, 505, 692, 721 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 410, 759, 773 |
| AgsI | TTSAA | 4 cut(s) | 29, 340, 986, 1019 |
| AjnI | CCWGG | 2 cut(s) | 530, 678 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 630, 662 |
| AluBI | AGCT | 5 cut(s) | 34, 129, 252, 469, 929 |
| AluI | AGCT | 5 cut(s) | 34, 129, 252, 469, 929 |
| Alw21I | GWGCWC | 1 cut(s) | 225 |
| AlwI | GGATC | 1 cut(s) | 393 |
| AoxI | GGCC | 2 cut(s) | 597, 940 |
| ApeKI | GCWGC | 2 cut(s) | 70, 872 |
| ApoI | RAATTY | 1 cut(s) | 117 |
| Asp718I | GGTACC | 1 cut(s) | 198 |
| AspLEI | GCGC | 1 cut(s) | 938 |
| AspS9I | GGNCC | 3 cut(s) | 597, 844, 1033 |
| AsuC2I | CCSGG | 1 cut(s) | 848 |
| AsuHPI | GGTGA | 2 cut(s) | 307, 872 |
| AvaII | GGWCC | 2 cut(s) | 844, 1033 |
| BanI | GGYRCC | 1 cut(s) | 198 |
| BanII | GRGCYC | 1 cut(s) | 435 |
| Bbv12I | GWGCWC | 1 cut(s) | 225 |
| BbvI | GCAGC | 2 cut(s) | 57, 884 |
| BccI | CCATC | 3 cut(s) | 422, 511, 791 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 149, 183 |
| BciT130I | CCWGG | 2 cut(s) | 532, 680 |
| BcnI | CCSGG | 1 cut(s) | 848 |
| BfaI | CTAG | 1 cut(s) | 771 |
| BfmI | CTRYAG | 1 cut(s) | 234 |
| BisI | GCNGC | 2 cut(s) | 71, 873 |
| BlpI | GCTNAGC | 1 cut(s) | 125 |
| BlsI | GCNGC | 2 cut(s) | 72, 874 |
| BmcAI | AGTACT | 1 cut(s) | 505 |
| Bme1390I | CCNGG | 3 cut(s) | 532, 680, 848 |
| Bme18I | GGWCC | 2 cut(s) | 844, 1033 |
| BmgT120I | GGNCC | 3 cut(s) | 597, 844, 1033 |
| BmiI | GGNNCC | 2 cut(s) | 200, 434 |
| BmrFI | CCNGG | 3 cut(s) | 532, 680, 848 |
| BmsI | GCATC | 2 cut(s) | 82, 546 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 125 |
| BpuEI | CTTGAG | 1 cut(s) | 151 |
| BpuMI | CCSGG | 1 cut(s) | 848 |
| BsaAI | YACGTR | 1 cut(s) | 317 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 134, 164, 481, 511, 828, 858 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 410, 759, 773 |
| Bse1I | ACTGG | 3 cut(s) | 650, 730, 887 |
| Bse3DI | GCAATG | 2 cut(s) | 71, 908 |
| BseBI | CCWGG | 2 cut(s) | 532, 680 |
| BseGI | GGATG | 7 cut(s) | 159, 433, 508, 644, 691, 976, 1030 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 410, 759, 773 |
| BseMI | GCAATG | 2 cut(s) | 71, 908 |
| BseMII | CTCAG | 1 cut(s) | 198 |
| BseNI | ACTGG | 3 cut(s) | 650, 730, 887 |
| BseRI | GAGGAG | 2 cut(s) | 59, 150 |
| BseXI | GCAGC | 2 cut(s) | 57, 884 |
| BseYI | CCCAGC | 1 cut(s) | 662 |
| BsgI | GTGCAG | 1 cut(s) | 836 |
| Bsh1236I | CGCG | 1 cut(s) | 936 |
| BshFI | GGCC | 2 cut(s) | 599, 942 |
| BshNI | GGYRCC | 1 cut(s) | 198 |
| BsiHKAI | GWGCWC | 1 cut(s) | 225 |
| BsiSI | CCGG | 2 cut(s) | 512, 847 |
| BslFI | GGGAC | 1 cut(s) | 431 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 410, 759, 773 |
| BsmFI | GGGAC | 1 cut(s) | 431 |
| BsnI | GGCC | 2 cut(s) | 599, 942 |
| Bsp1286I | GDGCHC | 2 cut(s) | 225, 435 |
| Bsp143I | GATC | 2 cut(s) | 166, 385 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 125 |
| BspACI | CCGC | 3 cut(s) | 122, 195, 917 |
| BspANI | GGCC | 2 cut(s) | 599, 942 |
| BspCNI | CTCAG | 1 cut(s) | 197 |
| BspFNI | CGCG | 1 cut(s) | 936 |
| BspLI | GGNNCC | 2 cut(s) | 200, 434 |
| BspPI | GGATC | 1 cut(s) | 393 |
| BspT107I | GGYRCC | 1 cut(s) | 198 |
| BsrDI | GCAATG | 2 cut(s) | 71, 908 |
| BsrI | ACTGG | 3 cut(s) | 650, 730, 887 |
| BssMI | GATC | 2 cut(s) | 166, 385 |
| BssNAI | GTATAC | 1 cut(s) | 588 |
| Bst1107I | GTATAC | 1 cut(s) | 588 |
| Bst2UI | CCWGG | 2 cut(s) | 532, 680 |
| Bst4CI | ACNGT | 2 cut(s) | 955, 995 |
| Bst6I | CTCTTC | 1 cut(s) | 247 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 70, 878, 914 |
| BstBAI | YACGTR | 1 cut(s) | 317 |
| BstC8I | GCNNGC | 3 cut(s) | 324, 915, 940 |
| BstDEI | CTNAG | 2 cut(s) | 125, 184 |
| BstF5I | GGATG | 7 cut(s) | 159, 433, 508, 644, 691, 976, 1030 |
| BstFNI | CGCG | 1 cut(s) | 936 |
| BstHHI | GCGC | 1 cut(s) | 938 |
| BstKTI | GATC | 2 cut(s) | 169, 388 |
| BstMBI | GATC | 2 cut(s) | 166, 385 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 70, 739, 878, 905, 914, 935 |
| BstNI | CCWGG | 2 cut(s) | 532, 680 |
| BstNSI | RCATGY | 3 cut(s) | 326, 563, 917 |
| BstSCI | CCNGG | 3 cut(s) | 530, 678, 846 |
| BstSFI | CTRYAG | 1 cut(s) | 234 |
| BstSNI | TACGTA | 1 cut(s) | 317 |
| BstUI | CGCG | 1 cut(s) | 936 |
| BstV1I | GCAGC | 2 cut(s) | 57, 884 |
| BstX2I | RGATCY | 1 cut(s) | 385 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 360, 607 |
| BstYI | RGATCY | 1 cut(s) | 385 |
| BstZ17I | GTATAC | 1 cut(s) | 588 |
| BsuRI | GGCC | 2 cut(s) | 599, 942 |
| BtgZI | GCGATG | 1 cut(s) | 530 |
| BtsCI | GGATG | 7 cut(s) | 159, 433, 508, 644, 691, 976, 1030 |
| BtsIMutI | CAGTG | 4 cut(s) | 87, 192, 723, 960 |
| Cac8I | GCNNGC | 3 cut(s) | 324, 915, 940 |
| CfoI | GCGC | 1 cut(s) | 938 |
| Cfr13I | GGNCC | 3 cut(s) | 597, 844, 1033 |
| CsiI | ACCWGGT | 1 cut(s) | 678 |
| Csp6I | GTAC | 7 cut(s) | 181, 199, 302, 314, 504, 691, 720 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 198, 233, 947, 982 |
| CviAII | CATG | 6 cut(s) | 203, 226, 323, 327, 560, 914 |
| CviQI | GTAC | 7 cut(s) | 181, 199, 302, 314, 504, 691, 720 |
| DdeI | CTNAG | 2 cut(s) | 125, 184 |
| DpnI | GATC | 2 cut(s) | 168, 387 |
| DpnII | GATC | 2 cut(s) | 166, 385 |
| DraI | TTTAAA | 1 cut(s) | 445 |
| DraIII | CACNNNGTG | 2 cut(s) | 260, 773 |
| Eam1104I | CTCTTC | 1 cut(s) | 247 |
| EarI | CTCTTC | 1 cut(s) | 247 |
| Eco105I | TACGTA | 1 cut(s) | 317 |
| Eco24I | GRGCYC | 1 cut(s) | 435 |
| Eco47I | GGWCC | 2 cut(s) | 844, 1033 |
| Eco57I | CTGAAG | 1 cut(s) | 95 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1033 |
| EcoRII | CCWGG | 2 cut(s) | 530, 678 |
| EcoT22I | ATGCAT | 3 cut(s) | 324, 328, 561 |
| EcoT38I | GRGCYC | 1 cut(s) | 435 |
| FaeI | CATG | 6 cut(s) | 206, 229, 326, 330, 563, 917 |
| FaqI | GGGAC | 1 cut(s) | 431 |
| FatI | CATG | 6 cut(s) | 202, 225, 322, 326, 559, 913 |
| FauI | CCCGC | 1 cut(s) | 188 |
| FblI | GTMKAC | 1 cut(s) | 587 |
| Fnu4HI | GCNGC | 2 cut(s) | 71, 873 |
| FokI | GGATG | 7 cut(s) | 166, 440, 495, 651, 698, 983, 1037 |
| FriOI | GRGCYC | 1 cut(s) | 435 |
| Fsp4HI | GCNGC | 2 cut(s) | 71, 873 |
| FspBI | CTAG | 1 cut(s) | 771 |
| GlaI | GCGC | 1 cut(s) | 937 |
| GluI | GCNGC | 2 cut(s) | 71, 873 |
| GsaI | CCCAGC | 1 cut(s) | 666 |
| HaeIII | GGCC | 2 cut(s) | 599, 942 |
| HapII | CCGG | 2 cut(s) | 512, 847 |
| HhaI | GCGC | 1 cut(s) | 938 |
| Hin1II | CATG | 6 cut(s) | 206, 229, 326, 330, 563, 917 |
| Hin6I | GCGC | 1 cut(s) | 936 |
| HinP1I | GCGC | 1 cut(s) | 936 |
| HindIII | AAGCTT | 2 cut(s) | 127, 927 |
| HinfI | GANTC | 4 cut(s) | 496, 736, 780, 986 |
| HpaII | CCGG | 2 cut(s) | 512, 847 |
| HphI | GGTGA | 2 cut(s) | 307, 872 |
| Hpy166II | GTNNAC | 3 cut(s) | 87, 588, 767 |
| Hpy188I | TCNGA | 2 cut(s) | 991, 1042 |
| Hpy188III | TCNNGA | 1 cut(s) | 29 |
| Hpy8I | GTNNAC | 3 cut(s) | 87, 588, 767 |
| HpyAV | CCTTC | 6 cut(s) | 70, 208, 277, 286, 370, 953 |
| HpyCH4III | ACNGT | 2 cut(s) | 955, 995 |
| HpyCH4IV | ACGT | 1 cut(s) | 316 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 70, 739, 878, 905, 914, 935 |
| HpyF3I | CTNAG | 2 cut(s) | 125, 184 |
| HpySE526I | ACGT | 1 cut(s) | 316 |
| Hsp92II | CATG | 6 cut(s) | 206, 229, 326, 330, 563, 917 |
| HspAI | GCGC | 1 cut(s) | 936 |
| KpnI | GGTACC | 1 cut(s) | 202 |
| Kzo9I | GATC | 2 cut(s) | 166, 385 |
| LmnI | GCTCC | 3 cut(s) | 61, 220, 438 |
| Lsp1109I | GCAGC | 2 cut(s) | 57, 884 |
| LweI | GCATC | 2 cut(s) | 82, 546 |
| MabI | ACCWGGT | 1 cut(s) | 678 |
| MaeI | CTAG | 1 cut(s) | 771 |
| MaeII | ACGT | 1 cut(s) | 316 |
| MalI | GATC | 2 cut(s) | 168, 387 |
| MboI | GATC | 2 cut(s) | 166, 385 |
| MboII | GAAGA | 3 cut(s) | 234, 292, 577 |
| MflI | RGATCY | 1 cut(s) | 385 |
| MhlI | GDGCHC | 2 cut(s) | 225, 435 |
| MluCI | AATT | 5 cut(s) | 36, 117, 448, 569, 1044 |
| MlyI | GAGTC | 3 cut(s) | 490, 745, 774 |
| Mph1103I | ATGCAT | 3 cut(s) | 324, 328, 561 |
| MseI | TTAA | 4 cut(s) | 444, 462, 525, 672 |
| MslI | CAYNNNNRTG | 1 cut(s) | 605 |
| MspI | CCGG | 2 cut(s) | 512, 847 |
| MspR9I | CCNGG | 3 cut(s) | 532, 680, 848 |
| MvaI | CCWGG | 2 cut(s) | 532, 680 |
| MvnI | CGCG | 1 cut(s) | 936 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 70, 739, 878, 905, 914, 935 |
| NciI | CCSGG | 1 cut(s) | 848 |
| NdeII | GATC | 2 cut(s) | 166, 385 |
| NlaIII | CATG | 6 cut(s) | 206, 229, 326, 330, 563, 917 |
| NlaIV | GGNNCC | 2 cut(s) | 200, 434 |
| NsiI | ATGCAT | 3 cut(s) | 324, 328, 561 |
| NspI | RCATGY | 3 cut(s) | 326, 563, 917 |
| PaeI | GCATGC | 2 cut(s) | 326, 917 |
| PfeI | GAWTC | 1 cut(s) | 986 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 773 |
| PfoI | TCCNGGA | 1 cut(s) | 846 |
| PkrI | GCNGC | 2 cut(s) | 72, 874 |
| PleI | GAGTC | 3 cut(s) | 490, 744, 774 |
| PpsI | GAGTC | 3 cut(s) | 490, 744, 774 |
| Ppu21I | YACGTR | 1 cut(s) | 317 |
| PpuMI | RGGWCCY | 1 cut(s) | 1033 |
| PsiI | TTATAA | 1 cut(s) | 950 |
| Psp5II | RGGWCCY | 1 cut(s) | 1033 |
| Psp6I | CCWGG | 2 cut(s) | 530, 678 |
| PspFI | CCCAGC | 1 cut(s) | 662 |
| PspGI | CCWGG | 2 cut(s) | 530, 678 |
| PspN4I | GGNNCC | 2 cut(s) | 200, 434 |
| PspPI | GGNCC | 3 cut(s) | 597, 844, 1033 |
| PspPPI | RGGWCCY | 1 cut(s) | 1033 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 703, 735 |
| PsuI | RGATCY | 1 cut(s) | 385 |
| RsaI | GTAC | 7 cut(s) | 182, 200, 303, 315, 505, 692, 721 |
| RsaNI | GTAC | 7 cut(s) | 181, 199, 302, 314, 504, 691, 720 |
| RseI | CAYNNNNRTG | 1 cut(s) | 605 |
| SaqAI | TTAA | 4 cut(s) | 444, 462, 525, 672 |
| SatI | GCNGC | 2 cut(s) | 71, 873 |
| Sau3AI | GATC | 2 cut(s) | 166, 385 |
| Sau96I | GGNCC | 3 cut(s) | 597, 844, 1033 |
| ScaI | AGTACT | 1 cut(s) | 505 |
| SchI | GAGTC | 3 cut(s) | 490, 745, 774 |
| ScrFI | CCNGG | 3 cut(s) | 532, 680, 848 |
| SduI | GDGCHC | 2 cut(s) | 225, 435 |
| SexAI | ACCWGGT | 1 cut(s) | 678 |
| SfaNI | GCATC | 2 cut(s) | 82, 546 |
| SfcI | CTRYAG | 1 cut(s) | 234 |
| SinI | GGWCC | 2 cut(s) | 844, 1033 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 605 |
| SmlI | CTYRAG | 1 cut(s) | 130 |
| SmoI | CTYRAG | 1 cut(s) | 130 |
| SnaBI | TACGTA | 1 cut(s) | 317 |
| SphI | GCATGC | 2 cut(s) | 326, 917 |
| Sse9I | AATT | 5 cut(s) | 36, 117, 448, 569, 1044 |
| SsiI | CCGC | 3 cut(s) | 122, 195, 917 |
| SspI | AATATT | 1 cut(s) | 793 |
| SspMI | CTAG | 1 cut(s) | 771 |
| StyD4I | CCNGG | 3 cut(s) | 530, 678, 846 |
| TaaI | ACNGT | 2 cut(s) | 955, 995 |
| TaiI | ACGT | 1 cut(s) | 319 |
| TaqI | TCGA | 3 cut(s) | 169, 494, 883 |
| TasI | AATT | 5 cut(s) | 36, 117, 448, 569, 1044 |
| TatI | WGTACW | 3 cut(s) | 180, 503, 690 |
| TfiI | GAWTC | 1 cut(s) | 986 |
| Tru1I | TTAA | 4 cut(s) | 444, 462, 525, 672 |
| Tru9I | TTAA | 4 cut(s) | 444, 462, 525, 672 |
| TscAI | CASTG | 4 cut(s) | 94, 192, 730, 960 |
| TseI | GCWGC | 2 cut(s) | 70, 872 |
| TspDTI | ATGAA | 5 cut(s) | 35, 262, 471, 881, 987 |
| TspRI | CASTG | 4 cut(s) | 94, 192, 730, 960 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 773 |
| VpaK11BI | GGWCC | 2 cut(s) | 844, 1033 |
| XapI | RAATTY | 1 cut(s) | 117 |
| XceI | RCATGY | 3 cut(s) | 326, 563, 917 |
| XmiI | GTMKAC | 1 cut(s) | 587 |
| XspI | CTAG | 1 cut(s) | 771 |
| ZrmI | AGTACT | 1 cut(s) | 505 |
| Zsp2I | ATGCAT | 3 cut(s) | 324, 328, 561 |