Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 32 - 102 | 1.3e-10 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 162 |
| AclWI | GGATC | 1 cut(s) | 65 |
| AfaI | GTAC | 1 cut(s) | 195 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 158 |
| AflIII | ACRYGT | 1 cut(s) | 199 |
| AgsI | TTSAA | 1 cut(s) | 305 |
| AhlI | ACTAGT | 1 cut(s) | 190 |
| AluBI | AGCT | 4 cut(s) | 91, 176, 226, 308 |
| AluI | AGCT | 4 cut(s) | 91, 176, 226, 308 |
| Alw21I | GWGCWC | 1 cut(s) | 228 |
| AlwI | GGATC | 1 cut(s) | 65 |
| ApeKI | GCWGC | 2 cut(s) | 28, 165 |
| BanII | GRGCYC | 1 cut(s) | 228 |
| Bbv12I | GWGCWC | 1 cut(s) | 228 |
| BbvI | GCAGC | 2 cut(s) | 15, 152 |
| BccI | CCATC | 2 cut(s) | 95, 149 |
| BcuI | ACTAGT | 1 cut(s) | 190 |
| BfaI | CTAG | 4 cut(s) | 137, 191, 207, 230 |
| BisI | GCNGC | 3 cut(s) | 29, 163, 166 |
| BlsI | GCNGC | 3 cut(s) | 30, 164, 167 |
| BmsI | GCATC | 1 cut(s) | 15 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 158 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 158 |
| BseRI | GAGGAG | 1 cut(s) | 156 |
| BseXI | GCAGC | 2 cut(s) | 15, 152 |
| BsiHKAI | GWGCWC | 1 cut(s) | 228 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 158 |
| BsmI | GAATGC | 1 cut(s) | 51 |
| Bsp1286I | GDGCHC | 1 cut(s) | 228 |
| Bsp143I | GATC | 1 cut(s) | 70 |
| BspACI | CCGC | 1 cut(s) | 162 |
| BspPI | GGATC | 1 cut(s) | 65 |
| BssMI | GATC | 1 cut(s) | 70 |
| BstC8I | GCNNGC | 1 cut(s) | 248 |
| BstKTI | GATC | 1 cut(s) | 73 |
| BstMBI | GATC | 1 cut(s) | 70 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 88 |
| BstNSI | RCATGY | 1 cut(s) | 203 |
| BstV1I | GCAGC | 2 cut(s) | 15, 152 |
| Cac8I | GCNNGC | 1 cut(s) | 248 |
| Csp6I | GTAC | 1 cut(s) | 194 |
| CviAII | CATG | 2 cut(s) | 60, 200 |
| CviJI | RGCY | 8 cut(s) | 36, 67, 91, 165, 176, 226, 246, 308 |
| CviKI_1 | RGCY | 8 cut(s) | 36, 67, 91, 165, 176, 226, 246, 308 |
| CviQI | GTAC | 1 cut(s) | 194 |
| DpnI | GATC | 1 cut(s) | 72 |
| DpnII | GATC | 1 cut(s) | 70 |
| DraI | TTTAAA | 1 cut(s) | 172 |
| Ecl136II | GAGCTC | 1 cut(s) | 226 |
| Eco24I | GRGCYC | 1 cut(s) | 228 |
| Eco53kI | GAGCTC | 1 cut(s) | 226 |
| EcoICRI | GAGCTC | 1 cut(s) | 226 |
| EcoT38I | GRGCYC | 1 cut(s) | 228 |
| FaeI | CATG | 2 cut(s) | 63, 203 |
| FaiI | YATR | 4 cut(s) | 61, 201, 311, 320 |
| FatI | CATG | 2 cut(s) | 59, 199 |
| Fnu4HI | GCNGC | 3 cut(s) | 29, 163, 166 |
| FriOI | GRGCYC | 1 cut(s) | 228 |
| Fsp4HI | GCNGC | 3 cut(s) | 29, 163, 166 |
| FspBI | CTAG | 4 cut(s) | 137, 191, 207, 230 |
| GluI | GCNGC | 3 cut(s) | 29, 163, 166 |
| Hin1II | CATG | 2 cut(s) | 63, 203 |
| HinfI | GANTC | 1 cut(s) | 290 |
| HpyAV | CCTTC | 1 cut(s) | 236 |
| HpyCH4V | TGCA | 3 cut(s) | 49, 250, 274 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 88 |
| Hsp92II | CATG | 2 cut(s) | 63, 203 |
| Kzo9I | GATC | 1 cut(s) | 70 |
| LmnI | GCTCC | 1 cut(s) | 231 |
| LpnPI | CCDG | 5 cut(s) | 81, 134, 165, 203, 299 |
| Lsp1109I | GCAGC | 2 cut(s) | 15, 152 |
| LweI | GCATC | 1 cut(s) | 15 |
| MaeI | CTAG | 4 cut(s) | 137, 191, 207, 230 |
| MalI | GATC | 1 cut(s) | 72 |
| MboI | GATC | 1 cut(s) | 70 |
| MhlI | GDGCHC | 1 cut(s) | 228 |
| MluCI | AATT | 1 cut(s) | 325 |
| MlyI | GAGTC | 1 cut(s) | 299 |
| MnlI | CCTC | 2 cut(s) | 134, 262 |
| MseI | TTAA | 1 cut(s) | 171 |
| Mva1269I | GAATGC | 1 cut(s) | 51 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 88 |
| NdeII | GATC | 1 cut(s) | 70 |
| NlaIII | CATG | 2 cut(s) | 63, 203 |
| NspI | RCATGY | 1 cut(s) | 203 |
| PciI | ACATGT | 1 cut(s) | 199 |
| PctI | GAATGC | 1 cut(s) | 51 |
| PkrI | GCNGC | 3 cut(s) | 30, 164, 167 |
| PleI | GAGTC | 1 cut(s) | 298 |
| PpsI | GAGTC | 1 cut(s) | 298 |
| PscI | ACATGT | 1 cut(s) | 199 |
| Psp124BI | GAGCTC | 1 cut(s) | 228 |
| RsaI | GTAC | 1 cut(s) | 195 |
| RsaNI | GTAC | 1 cut(s) | 194 |
| SacI | GAGCTC | 1 cut(s) | 228 |
| SaqAI | TTAA | 1 cut(s) | 171 |
| SatI | GCNGC | 3 cut(s) | 29, 163, 166 |
| Sau3AI | GATC | 1 cut(s) | 70 |
| SchI | GAGTC | 1 cut(s) | 299 |
| SduI | GDGCHC | 1 cut(s) | 228 |
| SetI | ASST | 7 cut(s) | 93, 133, 178, 222, 228, 273, 310 |
| SfaNI | GCATC | 1 cut(s) | 15 |
| SpeI | ACTAGT | 1 cut(s) | 190 |
| Sse9I | AATT | 1 cut(s) | 325 |
| SsiI | CCGC | 1 cut(s) | 162 |
| SspI | AATATT | 1 cut(s) | 97 |
| SspMI | CTAG | 4 cut(s) | 137, 191, 207, 230 |
| SstI | GAGCTC | 1 cut(s) | 228 |
| TasI | AATT | 1 cut(s) | 325 |
| TatI | WGTACW | 1 cut(s) | 193 |
| TauI | GCSGC | 1 cut(s) | 165 |
| Tru1I | TTAA | 1 cut(s) | 171 |
| Tru9I | TTAA | 1 cut(s) | 171 |
| TseI | GCWGC | 2 cut(s) | 28, 165 |
| XceI | RCATGY | 1 cut(s) | 203 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 128 |
| XspI | CTAG | 4 cut(s) | 137, 191, 207, 230 |