Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 50 |
| Acc36I | ACCTGC | 1 cut(s) | 134 |
| AccBSI | CCGCTC | 1 cut(s) | 27 |
| AccII | CGCG | 6 cut(s) | 39, 41, 85, 98, 109, 281 |
| AciI | CCGC | 8 cut(s) | 25, 37, 41, 55, 101, 109, 157, 250 |
| AcoI | YGGCCR | 2 cut(s) | 158, 240 |
| AcyI | GRCGYC | 2 cut(s) | 47, 314 |
| AfaI | GTAC | 2 cut(s) | 88, 148 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 111 |
| Alw26I | GTCTC | 2 cut(s) | 12, 126 |
| AoxI | GGCC | 2 cut(s) | 158, 240 |
| ApeKI | GCWGC | 1 cut(s) | 194 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 119, 151 |
| AspLEI | GCGC | 4 cut(s) | 41, 85, 100, 283 |
| AsuHPI | GGTGA | 1 cut(s) | 298 |
| AsuNHI | GCTAGC | 1 cut(s) | 260 |
| BalI | TGGCCA | 1 cut(s) | 242 |
| BbvI | GCAGC | 1 cut(s) | 181 |
| BccI | CCATC | 1 cut(s) | 179 |
| BceAI | ACGGC | 1 cut(s) | 301 |
| BclI | TGATCA | 1 cut(s) | 91 |
| BcoDI | GTCTC | 2 cut(s) | 12, 126 |
| BfaI | CTAG | 1 cut(s) | 261 |
| BfmI | CTRYAG | 2 cut(s) | 141, 234 |
| BfuAI | ACCTGC | 1 cut(s) | 134 |
| BisI | GCNGC | 4 cut(s) | 56, 101, 158, 195 |
| BlsI | GCNGC | 4 cut(s) | 57, 102, 159, 196 |
| BmrI | ACTGGG | 1 cut(s) | 316 |
| BmsI | GCATC | 1 cut(s) | 181 |
| BmtI | GCTAGC | 1 cut(s) | 264 |
| BmuI | ACTGGG | 1 cut(s) | 316 |
| Bpu10I | CCTNAGC | 1 cut(s) | 75 |
| BsaBI | GATNNNNATC | 1 cut(s) | 223 |
| BsaHI | GRCGYC | 2 cut(s) | 47, 314 |
| BsaI | GGTCTC | 1 cut(s) | 126 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 111 |
| Bse118I | RCCGGY | 2 cut(s) | 160, 283 |
| Bse1I | ACTGG | 1 cut(s) | 311 |
| Bse8I | GATNNNNATC | 1 cut(s) | 223 |
| BseGI | GGATG | 3 cut(s) | 190, 196, 224 |
| BseJI | GATNNNNATC | 1 cut(s) | 223 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 111 |
| BseMII | CTCAG | 1 cut(s) | 89 |
| BseNI | ACTGG | 1 cut(s) | 311 |
| BseX3I | CGGCCG | 1 cut(s) | 158 |
| BseXI | GCAGC | 1 cut(s) | 181 |
| Bsh1236I | CGCG | 6 cut(s) | 39, 41, 85, 98, 109, 281 |
| Bsh1285I | CGRYCG | 1 cut(s) | 161 |
| BshFI | GGCC | 2 cut(s) | 160, 242 |
| BsiEI | CGRYCG | 1 cut(s) | 161 |
| BsiSI | CCGG | 3 cut(s) | 71, 161, 284 |
| BslFI | GGGAC | 2 cut(s) | 58, 232 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 111 |
| BsmAI | GTCTC | 2 cut(s) | 12, 126 |
| BsmFI | GGGAC | 2 cut(s) | 58, 232 |
| BsnI | GGCC | 2 cut(s) | 160, 242 |
| Bso31I | GGTCTC | 1 cut(s) | 126 |
| Bsp143I | GATC | 2 cut(s) | 91, 218 |
| BspACI | CCGC | 8 cut(s) | 25, 37, 41, 55, 101, 109, 157, 250 |
| BspANI | GGCC | 2 cut(s) | 160, 242 |
| BspCNI | CTCAG | 1 cut(s) | 88 |
| BspFNI | CGCG | 6 cut(s) | 39, 41, 85, 98, 109, 281 |
| BspMAI | CTGCAG | 1 cut(s) | 145 |
| BspMI | ACCTGC | 1 cut(s) | 134 |
| BspOI | GCTAGC | 1 cut(s) | 264 |
| BspTNI | GGTCTC | 1 cut(s) | 126 |
| BsrBI | CCGCTC | 1 cut(s) | 27 |
| BsrFI | RCCGGY | 2 cut(s) | 160, 283 |
| BsrI | ACTGG | 1 cut(s) | 311 |
| BssAI | RCCGGY | 2 cut(s) | 160, 283 |
| BssMI | GATC | 2 cut(s) | 91, 218 |
| BssNI | GRCGYC | 2 cut(s) | 47, 314 |
| Bst4CI | ACNGT | 1 cut(s) | 238 |
| BstACI | GRCGYC | 2 cut(s) | 47, 314 |
| BstC8I | GCNNGC | 2 cut(s) | 162, 262 |
| BstDEI | CTNAG | 1 cut(s) | 75 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 109 |
| BstF5I | GGATG | 3 cut(s) | 190, 196, 224 |
| BstFNI | CGCG | 6 cut(s) | 39, 41, 85, 98, 109, 281 |
| BstHHI | GCGC | 4 cut(s) | 41, 85, 100, 283 |
| BstKTI | GATC | 2 cut(s) | 94, 221 |
| BstMAI | GTCTC | 2 cut(s) | 12, 126 |
| BstMBI | GATC | 2 cut(s) | 91, 218 |
| BstMCI | CGRYCG | 1 cut(s) | 161 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 80, 106, 157, 170, 308 |
| BstSFI | CTRYAG | 2 cut(s) | 141, 234 |
| BstUI | CGCG | 6 cut(s) | 39, 41, 85, 98, 109, 281 |
| BstV1I | GCAGC | 1 cut(s) | 181 |
| BstZI | CGGCCG | 1 cut(s) | 158 |
| BsuRI | GGCC | 2 cut(s) | 160, 242 |
| BtsCI | GGATG | 3 cut(s) | 190, 196, 224 |
| BtsI | GCAGTG | 1 cut(s) | 158 |
| BtsIMutI | CAGTG | 2 cut(s) | 158, 243 |
| BveI | ACCTGC | 1 cut(s) | 134 |
| Cac8I | GCNNGC | 2 cut(s) | 162, 262 |
| CfoI | GCGC | 4 cut(s) | 41, 85, 100, 283 |
| Cfr10I | RCCGGY | 2 cut(s) | 160, 283 |
| CseI | GACGC | 1 cut(s) | 322 |
| Csp6I | GTAC | 2 cut(s) | 87, 147 |
| CviJI | RGCY | 5 cut(s) | 74, 160, 164, 242, 302 |
| CviKI_1 | RGCY | 5 cut(s) | 74, 160, 164, 242, 302 |
| CviQI | GTAC | 2 cut(s) | 87, 147 |
| DdeI | CTNAG | 1 cut(s) | 75 |
| DpnI | GATC | 2 cut(s) | 93, 220 |
| DpnII | GATC | 2 cut(s) | 91, 218 |
| EaeI | YGGCCR | 2 cut(s) | 158, 240 |
| EagI | CGGCCG | 1 cut(s) | 158 |
| EclXI | CGGCCG | 1 cut(s) | 158 |
| Eco31I | GGTCTC | 1 cut(s) | 126 |
| Eco52I | CGGCCG | 1 cut(s) | 158 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 109 |
| FaiI | YATR | 1 cut(s) | 323 |
| FaqI | GGGAC | 2 cut(s) | 58, 232 |
| FauI | CCCGC | 2 cut(s) | 34, 257 |
| FbaI | TGATCA | 1 cut(s) | 91 |
| Fnu4HI | GCNGC | 4 cut(s) | 56, 101, 158, 195 |
| FokI | GGATG | 3 cut(s) | 197, 203, 211 |
| Fsp4HI | GCNGC | 4 cut(s) | 56, 101, 158, 195 |
| FspBI | CTAG | 1 cut(s) | 261 |
| GlaI | GCGC | 4 cut(s) | 40, 84, 99, 282 |
| GluI | GCNGC | 4 cut(s) | 56, 101, 158, 195 |
| HaeIII | GGCC | 2 cut(s) | 160, 242 |
| HapII | CCGG | 3 cut(s) | 71, 161, 284 |
| HgaI | GACGC | 1 cut(s) | 322 |
| HhaI | GCGC | 4 cut(s) | 41, 85, 100, 283 |
| Hin1I | GRCGYC | 2 cut(s) | 47, 314 |
| Hin6I | GCGC | 4 cut(s) | 39, 83, 98, 281 |
| HinP1I | GCGC | 4 cut(s) | 39, 83, 98, 281 |
| HincII | GTYRAC | 1 cut(s) | 277 |
| HindII | GTYRAC | 1 cut(s) | 277 |
| HinfI | GANTC | 2 cut(s) | 134, 292 |
| HpaII | CCGG | 3 cut(s) | 71, 161, 284 |
| HphI | GGTGA | 1 cut(s) | 298 |
| Hpy166II | GTNNAC | 1 cut(s) | 277 |
| Hpy188I | TCNGA | 5 cut(s) | 19, 126, 133, 181, 329 |
| Hpy188III | TCNNGA | 1 cut(s) | 77 |
| Hpy8I | GTNNAC | 1 cut(s) | 277 |
| Hpy99I | CGWCG | 3 cut(s) | 52, 301, 316 |
| HpyAV | CCTTC | 1 cut(s) | 75 |
| HpyCH4III | ACNGT | 1 cut(s) | 238 |
| HpyCH4IV | ACGT | 1 cut(s) | 47 |
| HpyCH4V | TGCA | 1 cut(s) | 143 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 80, 106, 157, 170, 308 |
| HpyF3I | CTNAG | 1 cut(s) | 75 |
| HpySE526I | ACGT | 1 cut(s) | 47 |
| Hsp92I | GRCGYC | 2 cut(s) | 47, 314 |
| HspAI | GCGC | 4 cut(s) | 39, 83, 98, 281 |
| KroI | GCCGGC | 1 cut(s) | 160 |
| KroNI | GCCGGC | 1 cut(s) | 162 |
| Ksp22I | TGATCA | 1 cut(s) | 91 |
| Kzo9I | GATC | 2 cut(s) | 91, 218 |
| LmnI | GCTCC | 1 cut(s) | 202 |
| LpnPI | CCDG | 6 cut(s) | 62, 84, 129, 174, 292, 297 |
| Lsp1109I | GCAGC | 1 cut(s) | 181 |
| LweI | GCATC | 1 cut(s) | 181 |
| MaeI | CTAG | 1 cut(s) | 261 |
| MaeII | ACGT | 1 cut(s) | 47 |
| MalI | GATC | 2 cut(s) | 93, 220 |
| MbiI | CCGCTC | 1 cut(s) | 27 |
| MboI | GATC | 2 cut(s) | 91, 218 |
| MlsI | TGGCCA | 1 cut(s) | 242 |
| MluNI | TGGCCA | 1 cut(s) | 242 |
| MlyI | GAGTC | 1 cut(s) | 143 |
| MnlI | CCTC | 6 cut(s) | 23, 73, 105, 111, 115, 175 |
| Mox20I | TGGCCA | 1 cut(s) | 242 |
| MroNI | GCCGGC | 1 cut(s) | 160 |
| MscI | TGGCCA | 1 cut(s) | 242 |
| Msp20I | TGGCCA | 1 cut(s) | 242 |
| MspI | CCGG | 3 cut(s) | 71, 161, 284 |
| MvnI | CGCG | 6 cut(s) | 39, 41, 85, 98, 109, 281 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 80, 106, 157, 170, 308 |
| NaeI | GCCGGC | 1 cut(s) | 162 |
| NdeII | GATC | 2 cut(s) | 91, 218 |
| NgoMIV | GCCGGC | 1 cut(s) | 160 |
| NheI | GCTAGC | 1 cut(s) | 260 |
| PdiI | GCCGGC | 1 cut(s) | 162 |
| PfeI | GAWTC | 1 cut(s) | 292 |
| PflFI | GACNNNGTC | 1 cut(s) | 272 |
| PkrI | GCNGC | 4 cut(s) | 57, 102, 159, 196 |
| PleI | GAGTC | 1 cut(s) | 142 |
| PpsI | GAGTC | 1 cut(s) | 142 |
| PstI | CTGCAG | 1 cut(s) | 145 |
| PsyI | GACNNNGTC | 1 cut(s) | 272 |
| RsaI | GTAC | 2 cut(s) | 88, 148 |
| RsaNI | GTAC | 2 cut(s) | 87, 147 |
| SatI | GCNGC | 4 cut(s) | 56, 101, 158, 195 |
| Sau3AI | GATC | 2 cut(s) | 91, 218 |
| SchI | GAGTC | 1 cut(s) | 143 |
| SetI | ASST | 5 cut(s) | 50, 67, 116, 122, 148 |
| SfaNI | GCATC | 1 cut(s) | 181 |
| SfcI | CTRYAG | 2 cut(s) | 141, 234 |
| SgrAI | CRCCGGYG | 1 cut(s) | 283 |
| SsiI | CCGC | 8 cut(s) | 25, 37, 41, 55, 101, 109, 157, 250 |
| SspMI | CTAG | 1 cut(s) | 261 |
| TaaI | ACNGT | 1 cut(s) | 238 |
| TaiI | ACGT | 1 cut(s) | 50 |
| TaqI | TCGA | 1 cut(s) | 50 |
| TauI | GCSGC | 3 cut(s) | 58, 103, 160 |
| TfiI | GAWTC | 1 cut(s) | 292 |
| TscAI | CASTG | 2 cut(s) | 158, 243 |
| TseI | GCWGC | 1 cut(s) | 194 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 1 cut(s) | 285 |
| TspRI | CASTG | 2 cut(s) | 158, 243 |
| Tth111I | GACNNNGTC | 1 cut(s) | 272 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 109 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 235 |
| XspI | CTAG | 1 cut(s) | 261 |
| ZraI | GACGTC | 1 cut(s) | 48 |