Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 37 - 158 | 1.3e-30 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 293 |
| Acc65I | GGTACC | 1 cut(s) | 511 |
| AccB1I | GGYRCC | 1 cut(s) | 511 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 460 |
| AcoI | YGGCCR | 1 cut(s) | 267 |
| AcsI | RAATTY | 1 cut(s) | 607 |
| AfaI | GTAC | 2 cut(s) | 324, 513 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 92, 460, 598 |
| AflIII | ACRYGT | 2 cut(s) | 424, 476 |
| AjnI | CCWGG | 1 cut(s) | 339 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 414, 446 |
| AluBI | AGCT | 5 cut(s) | 10, 71, 205, 329, 638 |
| AluI | AGCT | 5 cut(s) | 10, 71, 205, 329, 638 |
| Alw26I | GTCTC | 2 cut(s) | 32, 381 |
| Ama87I | CYCGRG | 1 cut(s) | 293 |
| AoxI | GGCC | 1 cut(s) | 267 |
| ApoI | RAATTY | 1 cut(s) | 607 |
| AseI | ATTAAT | 2 cut(s) | 615, 621 |
| Asp718I | GGTACC | 1 cut(s) | 511 |
| AsuHPI | GGTGA | 1 cut(s) | 188 |
| AvaI | CYCGRG | 1 cut(s) | 293 |
| BalI | TGGCCA | 1 cut(s) | 269 |
| BanI | GGYRCC | 1 cut(s) | 511 |
| BauI | CACGAG | 1 cut(s) | 570 |
| BbsI | GAAGAC | 1 cut(s) | 210 |
| BccI | CCATC | 3 cut(s) | 110, 128, 592 |
| BceAI | ACGGC | 1 cut(s) | 234 |
| BciT130I | CCWGG | 1 cut(s) | 341 |
| BcoDI | GTCTC | 2 cut(s) | 32, 381 |
| BlpI | GCTNAGC | 1 cut(s) | 639 |
| Bme1390I | CCNGG | 1 cut(s) | 341 |
| BmeT110I | CYCGRG | 1 cut(s) | 293 |
| BmiI | GGNNCC | 2 cut(s) | 121, 513 |
| BmrFI | CCNGG | 1 cut(s) | 341 |
| BmsI | GCATC | 3 cut(s) | 157, 232, 406 |
| BpiI | GAAGAC | 1 cut(s) | 210 |
| Bpu10I | CCTNAGC | 1 cut(s) | 502 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 639 |
| BsaJI | CCNNGG | 2 cut(s) | 340, 507 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 130, 160 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 92, 460, 598 |
| BseBI | CCWGG | 1 cut(s) | 341 |
| BseDI | CCNNGG | 2 cut(s) | 340, 507 |
| BseGI | GGATG | 3 cut(s) | 139, 172, 535 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 92, 460, 598 |
| BseMII | CTCAG | 1 cut(s) | 630 |
| BseRI | GAGGAG | 1 cut(s) | 213 |
| BseYI | CCCAGC | 1 cut(s) | 205 |
| BshFI | GGCC | 1 cut(s) | 269 |
| BshNI | GGYRCC | 1 cut(s) | 511 |
| BsiHKCI | CYCGRG | 1 cut(s) | 293 |
| BslFI | GGGAC | 1 cut(s) | 574 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 92, 460, 598 |
| BsmAI | GTCTC | 2 cut(s) | 32, 381 |
| BsmFI | GGGAC | 1 cut(s) | 574 |
| BsnI | GGCC | 1 cut(s) | 269 |
| BsoBI | CYCGRG | 1 cut(s) | 293 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 639 |
| BspANI | GGCC | 1 cut(s) | 269 |
| BspCNI | CTCAG | 1 cut(s) | 631 |
| BspLI | GGNNCC | 2 cut(s) | 121, 513 |
| BspT107I | GGYRCC | 1 cut(s) | 511 |
| BssECI | CCNNGG | 2 cut(s) | 340, 507 |
| BssSI | CACGAG | 1 cut(s) | 570 |
| Bst2BI | CACGAG | 1 cut(s) | 570 |
| Bst2UI | CCWGG | 1 cut(s) | 341 |
| Bst4CI | ACNGT | 3 cut(s) | 418, 446, 551 |
| Bst6I | CTCTTC | 2 cut(s) | 55, 231 |
| BstC8I | GCNNGC | 1 cut(s) | 247 |
| BstDEI | CTNAG | 2 cut(s) | 502, 639 |
| BstEII | GGTNACC | 1 cut(s) | 496 |
| BstF5I | GGATG | 3 cut(s) | 139, 172, 535 |
| BstMAI | GTCTC | 2 cut(s) | 32, 381 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 470 |
| BstNI | CCWGG | 1 cut(s) | 341 |
| BstNSI | RCATGY | 2 cut(s) | 50, 428 |
| BstPI | GGTNACC | 1 cut(s) | 496 |
| BstSCI | CCNGG | 1 cut(s) | 339 |
| BstV2I | GAAGAC | 1 cut(s) | 210 |
| BsuRI | GGCC | 1 cut(s) | 269 |
| BtsCI | GGATG | 3 cut(s) | 139, 172, 535 |
| BtsIMutI | CAGTG | 1 cut(s) | 451 |
| Cac8I | GCNNGC | 1 cut(s) | 247 |
| Csp6I | GTAC | 2 cut(s) | 323, 512 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 263, 298 |
| CviAII | CATG | 7 cut(s) | 35, 47, 192, 230, 278, 352, 425 |
| CviQI | GTAC | 2 cut(s) | 323, 512 |
| DdeI | CTNAG | 2 cut(s) | 502, 639 |
| EaeI | YGGCCR | 1 cut(s) | 267 |
| Eam1104I | CTCTTC | 2 cut(s) | 55, 231 |
| EarI | CTCTTC | 2 cut(s) | 55, 231 |
| Eco88I | CYCGRG | 1 cut(s) | 293 |
| Eco91I | GGTNACC | 1 cut(s) | 496 |
| EcoO65I | GGTNACC | 1 cut(s) | 496 |
| EcoRII | CCWGG | 1 cut(s) | 339 |
| EcoT22I | ATGCAT | 1 cut(s) | 399 |
| FaeI | CATG | 7 cut(s) | 38, 50, 195, 233, 281, 355, 428 |
| FaqI | GGGAC | 1 cut(s) | 574 |
| FatI | CATG | 7 cut(s) | 34, 46, 191, 229, 277, 351, 424 |
| FokI | GGATG | 3 cut(s) | 146, 179, 542 |
| GsaI | CCCAGC | 1 cut(s) | 209 |
| HaeIII | GGCC | 1 cut(s) | 269 |
| Hin1II | CATG | 7 cut(s) | 38, 50, 195, 233, 281, 355, 428 |
| HphI | GGTGA | 1 cut(s) | 188 |
| Hpy188I | TCNGA | 1 cut(s) | 369 |
| Hpy188III | TCNNGA | 2 cut(s) | 434, 527 |
| HpyAV | CCTTC | 1 cut(s) | 90 |
| HpyCH4III | ACNGT | 3 cut(s) | 418, 446, 551 |
| HpyCH4IV | ACGT | 1 cut(s) | 476 |
| HpyCH4V | TGCA | 4 cut(s) | 191, 314, 397, 473 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 470 |
| HpyF3I | CTNAG | 2 cut(s) | 502, 639 |
| HpySE526I | ACGT | 1 cut(s) | 476 |
| Hsp92II | CATG | 7 cut(s) | 38, 50, 195, 233, 281, 355, 428 |
| KpnI | GGTACC | 1 cut(s) | 515 |
| LmnI | GCTCC | 2 cut(s) | 119, 635 |
| LpnPI | CCDG | 8 cut(s) | 191, 239, 259, 326, 339, 353, 512, 528 |
| LweI | GCATC | 3 cut(s) | 157, 232, 406 |
| MaeII | ACGT | 1 cut(s) | 476 |
| MaeIII | GTNAC | 5 cut(s) | 42, 347, 412, 496, 565 |
| MboII | GAAGA | 3 cut(s) | 72, 210, 218 |
| MlsI | TGGCCA | 1 cut(s) | 269 |
| MluCI | AATT | 3 cut(s) | 104, 315, 607 |
| MluNI | TGGCCA | 1 cut(s) | 269 |
| MmeI | TCCRAC | 2 cut(s) | 347, 445 |
| Mox20I | TGGCCA | 1 cut(s) | 269 |
| Mph1103I | ATGCAT | 1 cut(s) | 399 |
| MscI | TGGCCA | 1 cut(s) | 269 |
| MseI | TTAA | 6 cut(s) | 107, 183, 561, 615, 621, 649 |
| Msp20I | TGGCCA | 1 cut(s) | 269 |
| MspR9I | CCNGG | 1 cut(s) | 341 |
| MvaI | CCWGG | 1 cut(s) | 341 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 470 |
| NlaIII | CATG | 7 cut(s) | 38, 50, 195, 233, 281, 355, 428 |
| NlaIV | GGNNCC | 2 cut(s) | 121, 513 |
| NmeAIII | GCCGAG | 1 cut(s) | 532 |
| NmuCI | GTSAC | 3 cut(s) | 42, 347, 565 |
| NsiI | ATGCAT | 1 cut(s) | 399 |
| NspI | RCATGY | 2 cut(s) | 50, 428 |
| PaeR7I | CTCGAG | 1 cut(s) | 293 |
| PciI | ACATGT | 1 cut(s) | 424 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 460 |
| PscI | ACATGT | 1 cut(s) | 424 |
| PshBI | ATTAAT | 2 cut(s) | 615, 621 |
| Psp6I | CCWGG | 1 cut(s) | 339 |
| PspEI | GGTNACC | 1 cut(s) | 496 |
| PspFI | CCCAGC | 1 cut(s) | 205 |
| PspGI | CCWGG | 1 cut(s) | 339 |
| PspN4I | GGNNCC | 2 cut(s) | 121, 513 |
| PspXI | VCTCGAGB | 1 cut(s) | 293 |
| RsaI | GTAC | 2 cut(s) | 324, 513 |
| RsaNI | GTAC | 2 cut(s) | 323, 512 |
| SaqAI | TTAA | 6 cut(s) | 107, 183, 561, 615, 621, 649 |
| ScrFI | CCNGG | 1 cut(s) | 341 |
| SfaNI | GCATC | 3 cut(s) | 157, 232, 406 |
| Sfr274I | CTCGAG | 1 cut(s) | 293 |
| SlaI | CTCGAG | 1 cut(s) | 293 |
| SmlI | CTYRAG | 1 cut(s) | 293 |
| SmoI | CTYRAG | 1 cut(s) | 293 |
| Sse9I | AATT | 3 cut(s) | 104, 315, 607 |
| SspI | AATATT | 2 cut(s) | 112, 619 |
| StyD4I | CCNGG | 1 cut(s) | 339 |
| TaaI | ACNGT | 3 cut(s) | 418, 446, 551 |
| TaiI | ACGT | 1 cut(s) | 479 |
| TaqI | TCGA | 2 cut(s) | 294, 596 |
| TasI | AATT | 3 cut(s) | 104, 315, 607 |
| Tru1I | TTAA | 6 cut(s) | 107, 183, 561, 615, 621, 649 |
| Tru9I | TTAA | 6 cut(s) | 107, 183, 561, 615, 621, 649 |
| TscAI | CASTG | 1 cut(s) | 451 |
| TseFI | GTSAC | 3 cut(s) | 42, 347, 565 |
| Tsp45I | GTSAC | 3 cut(s) | 42, 347, 565 |
| TspDTI | ATGAA | 2 cut(s) | 218, 511 |
| TspRI | CASTG | 1 cut(s) | 451 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 460 |
| VspI | ATTAAT | 2 cut(s) | 615, 621 |
| XapI | RAATTY | 1 cut(s) | 607 |
| XceI | RCATGY | 2 cut(s) | 50, 428 |
| XhoI | CTCGAG | 1 cut(s) | 293 |
| Zsp2I | ATGCAT | 1 cut(s) | 399 |