Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Peptidase_C14 | PF00656 | 85 - 342 | 1.6e-32 | Caspase domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 285 |
| Acc16I | TGCGCA | 1 cut(s) | 85 |
| AccB1I | GGYRCC | 1 cut(s) | 866 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 876 |
| AciI | CCGC | 5 cut(s) | 172, 220, 230, 645, 729 |
| AcoI | YGGCCR | 1 cut(s) | 730 |
| AcsI | RAATTY | 2 cut(s) | 346, 368 |
| AdeI | CACNNNGTG | 1 cut(s) | 866 |
| AfaI | GTAC | 1 cut(s) | 688 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 105, 641, 876 |
| AflII | CTTAAG | 1 cut(s) | 956 |
| AgsI | TTSAA | 2 cut(s) | 367, 1008 |
| AluBI | AGCT | 4 cut(s) | 18, 310, 655, 773 |
| AluI | AGCT | 4 cut(s) | 18, 310, 655, 773 |
| Alw21I | GWGCWC | 1 cut(s) | 312 |
| Alw26I | GTCTC | 3 cut(s) | 531, 554, 578 |
| Ama87I | CYCGRG | 1 cut(s) | 311 |
| AoxI | GGCC | 2 cut(s) | 730, 1034 |
| ApeKI | GCWGC | 3 cut(s) | 18, 72, 318 |
| ApoI | RAATTY | 2 cut(s) | 346, 368 |
| AseI | ATTAAT | 1 cut(s) | 324 |
| AspLEI | GCGC | 2 cut(s) | 86, 93 |
| AspS9I | GGNCC | 1 cut(s) | 751 |
| AsuC2I | CCSGG | 2 cut(s) | 136, 642 |
| AsuHPI | GGTGA | 1 cut(s) | 524 |
| AvaI | CYCGRG | 1 cut(s) | 311 |
| AvaII | GGWCC | 1 cut(s) | 751 |
| BanI | GGYRCC | 1 cut(s) | 866 |
| BanII | GRGCYC | 1 cut(s) | 312 |
| BbsI | GAAGAC | 1 cut(s) | 372 |
| Bbv12I | GWGCWC | 1 cut(s) | 312 |
| BbvI | GCAGC | 3 cut(s) | 5, 59, 305 |
| BceAI | ACGGC | 2 cut(s) | 159, 248 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 322, 356, 430, 464, 465, 499 |
| BclI | TGATCA | 2 cut(s) | 514, 829 |
| BcnI | CCSGG | 2 cut(s) | 136, 642 |
| BcoDI | GTCTC | 3 cut(s) | 531, 554, 578 |
| BfaI | CTAG | 1 cut(s) | 554 |
| BfmI | CTRYAG | 4 cut(s) | 41, 51, 843, 1046 |
| BfrI | CTTAAG | 1 cut(s) | 956 |
| BisI | GCNGC | 4 cut(s) | 19, 73, 319, 730 |
| BlsI | GCNGC | 4 cut(s) | 20, 74, 320, 731 |
| Bme1390I | CCNGG | 2 cut(s) | 136, 642 |
| Bme18I | GGWCC | 1 cut(s) | 751 |
| BmeT110I | CYCGRG | 1 cut(s) | 311 |
| BmgT120I | GGNCC | 1 cut(s) | 751 |
| BmiI | GGNNCC | 1 cut(s) | 868 |
| BmrFI | CCNGG | 2 cut(s) | 136, 642 |
| BmsI | GCATC | 4 cut(s) | 71, 319, 661, 880 |
| BpiI | GAAGAC | 1 cut(s) | 372 |
| BpmI | CTGGAG | 1 cut(s) | 61 |
| BpuEI | CTTGAG | 1 cut(s) | 88 |
| BpuMI | CCSGG | 2 cut(s) | 136, 642 |
| Bsa29I | ATCGAT | 1 cut(s) | 888 |
| BsaJI | CCNNGG | 2 cut(s) | 134, 860 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 134, 164, 528, 558, 585, 615 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 105, 641, 876 |
| Bse118I | RCCGGY | 1 cut(s) | 503 |
| Bse3DI | GCAATG | 3 cut(s) | 86, 345, 945 |
| BseCI | ATCGAT | 1 cut(s) | 888 |
| BseDI | CCNNGG | 2 cut(s) | 134, 860 |
| BseGI | GGATG | 2 cut(s) | 676, 827 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 105, 641, 876 |
| BseMI | GCAATG | 3 cut(s) | 86, 345, 945 |
| BseMII | CTCAG | 1 cut(s) | 74 |
| BseRI | GAGGAG | 7 cut(s) | 105, 108, 111, 114, 117, 142, 216 |
| BseXI | GCAGC | 3 cut(s) | 5, 59, 305 |
| BshFI | GGCC | 2 cut(s) | 732, 1036 |
| BshNI | GGYRCC | 1 cut(s) | 866 |
| BshVI | ATCGAT | 1 cut(s) | 888 |
| BsiHKAI | GWGCWC | 1 cut(s) | 312 |
| BsiHKCI | CYCGRG | 1 cut(s) | 311 |
| BsiSI | CCGG | 3 cut(s) | 136, 504, 641 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 105, 641, 876 |
| BsmAI | GTCTC | 3 cut(s) | 531, 554, 578 |
| BsmBI | CGTCTC | 1 cut(s) | 531 |
| BsnI | GGCC | 2 cut(s) | 732, 1036 |
| BsoBI | CYCGRG | 1 cut(s) | 311 |
| Bsp1286I | GDGCHC | 1 cut(s) | 312 |
| Bsp143I | GATC | 5 cut(s) | 514, 597, 612, 829, 898 |
| BspACI | CCGC | 5 cut(s) | 172, 220, 230, 645, 729 |
| BspANI | GGCC | 2 cut(s) | 732, 1036 |
| BspCNI | CTCAG | 1 cut(s) | 73 |
| BspDI | ATCGAT | 1 cut(s) | 888 |
| BspLI | GGNNCC | 1 cut(s) | 868 |
| BspMAI | CTGCAG | 1 cut(s) | 45 |
| BspT107I | GGYRCC | 1 cut(s) | 866 |
| BspTI | CTTAAG | 1 cut(s) | 956 |
| BsrDI | GCAATG | 3 cut(s) | 86, 345, 945 |
| BsrFI | RCCGGY | 1 cut(s) | 503 |
| BssAI | RCCGGY | 1 cut(s) | 503 |
| BssECI | CCNNGG | 2 cut(s) | 134, 860 |
| BssMI | GATC | 5 cut(s) | 514, 597, 612, 829, 898 |
| Bst4CI | ACNGT | 3 cut(s) | 683, 691, 952 |
| Bst6I | CTCTTC | 2 cut(s) | 135, 160 |
| BstAFI | CTTAAG | 1 cut(s) | 956 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 349 |
| BstC8I | GCNNGC | 4 cut(s) | 257, 261, 392, 676 |
| BstDEI | CTNAG | 3 cut(s) | 60, 574, 588 |
| BstDSI | CCRYGG | 1 cut(s) | 860 |
| BstF5I | GGATG | 2 cut(s) | 676, 827 |
| BstHHI | GCGC | 2 cut(s) | 86, 93 |
| BstKTI | GATC | 5 cut(s) | 517, 600, 615, 832, 901 |
| BstMAI | GTCTC | 3 cut(s) | 531, 554, 578 |
| BstMBI | GATC | 5 cut(s) | 514, 597, 612, 829, 898 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 27, 81, 90, 349 |
| BstNSI | RCATGY | 1 cut(s) | 394 |
| BstSCI | CCNGG | 2 cut(s) | 134, 640 |
| BstSFI | CTRYAG | 4 cut(s) | 41, 51, 843, 1046 |
| BstV1I | GCAGC | 3 cut(s) | 5, 59, 305 |
| BstV2I | GAAGAC | 1 cut(s) | 372 |
| Bsu15I | ATCGAT | 1 cut(s) | 888 |
| BsuRI | GGCC | 2 cut(s) | 732, 1036 |
| BsuTUI | ATCGAT | 1 cut(s) | 888 |
| BtgI | CCRYGG | 1 cut(s) | 860 |
| BtsCI | GGATG | 2 cut(s) | 676, 827 |
| BtsI | GCAGTG | 1 cut(s) | 446 |
| BtsIMutI | CAGTG | 4 cut(s) | 396, 446, 688, 842 |
| Cac8I | GCNNGC | 4 cut(s) | 257, 261, 392, 676 |
| CfoI | GCGC | 2 cut(s) | 86, 93 |
| Cfr10I | RCCGGY | 1 cut(s) | 503 |
| Cfr13I | GGNCC | 1 cut(s) | 751 |
| ClaI | ATCGAT | 1 cut(s) | 888 |
| CseI | GACGC | 1 cut(s) | 366 |
| Csp6I | GTAC | 1 cut(s) | 687 |
| CviAII | CATG | 6 cut(s) | 7, 304, 391, 509, 659, 871 |
| CviQI | GTAC | 1 cut(s) | 687 |
| DdeI | CTNAG | 3 cut(s) | 60, 574, 588 |
| DpnI | GATC | 5 cut(s) | 516, 599, 614, 831, 900 |
| DpnII | GATC | 5 cut(s) | 514, 597, 612, 829, 898 |
| DraIII | CACNNNGTG | 1 cut(s) | 866 |
| EaeI | YGGCCR | 1 cut(s) | 730 |
| Eam1104I | CTCTTC | 2 cut(s) | 135, 160 |
| EarI | CTCTTC | 2 cut(s) | 135, 160 |
| EciI | GGCGGA | 1 cut(s) | 219 |
| Ecl136II | GAGCTC | 1 cut(s) | 310 |
| Eco147I | AGGCCT | 1 cut(s) | 1036 |
| Eco24I | GRGCYC | 1 cut(s) | 312 |
| Eco47I | GGWCC | 1 cut(s) | 751 |
| Eco53kI | GAGCTC | 1 cut(s) | 310 |
| Eco88I | CYCGRG | 1 cut(s) | 311 |
| EcoICRI | GAGCTC | 1 cut(s) | 310 |
| EcoT38I | GRGCYC | 1 cut(s) | 312 |
| Esp3I | CGTCTC | 1 cut(s) | 531 |
| FaeI | CATG | 6 cut(s) | 10, 307, 394, 512, 662, 874 |
| FatI | CATG | 6 cut(s) | 6, 303, 390, 508, 658, 870 |
| FauNDI | CATATG | 2 cut(s) | 190, 919 |
| FbaI | TGATCA | 2 cut(s) | 514, 829 |
| Fnu4HI | GCNGC | 4 cut(s) | 19, 73, 319, 730 |
| FokI | GGATG | 2 cut(s) | 683, 834 |
| FriOI | GRGCYC | 1 cut(s) | 312 |
| Fsp4HI | GCNGC | 4 cut(s) | 19, 73, 319, 730 |
| FspAI | RTGCGCAY | 1 cut(s) | 85 |
| FspBI | CTAG | 1 cut(s) | 554 |
| FspI | TGCGCA | 1 cut(s) | 85 |
| GlaI | GCGC | 2 cut(s) | 85, 92 |
| GluI | GCNGC | 4 cut(s) | 19, 73, 319, 730 |
| GsuI | CTGGAG | 1 cut(s) | 61 |
| HaeIII | GGCC | 2 cut(s) | 732, 1036 |
| HapII | CCGG | 3 cut(s) | 136, 504, 641 |
| HgaI | GACGC | 1 cut(s) | 366 |
| HhaI | GCGC | 2 cut(s) | 86, 93 |
| Hin1II | CATG | 6 cut(s) | 10, 307, 394, 512, 662, 874 |
| Hin6I | GCGC | 2 cut(s) | 84, 91 |
| HinP1I | GCGC | 2 cut(s) | 84, 91 |
| HinfI | GANTC | 2 cut(s) | 482, 977 |
| HpaII | CCGG | 3 cut(s) | 136, 504, 641 |
| HphI | GGTGA | 1 cut(s) | 524 |
| Hpy166II | GTNNAC | 2 cut(s) | 547, 1029 |
| Hpy188I | TCNGA | 2 cut(s) | 63, 632 |
| Hpy188III | TCNNGA | 3 cut(s) | 78, 695, 745 |
| Hpy8I | GTNNAC | 2 cut(s) | 547, 1029 |
| HpyAV | CCTTC | 5 cut(s) | 157, 189, 205, 243, 742 |
| HpyCH4III | ACNGT | 3 cut(s) | 683, 691, 952 |
| HpyCH4V | TGCA | 9 cut(s) | 30, 43, 321, 338, 343, 463, 714, 938, 943 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 27, 81, 90, 349 |
| HpyF3I | CTNAG | 3 cut(s) | 60, 574, 588 |
| Hsp92II | CATG | 6 cut(s) | 10, 307, 394, 512, 662, 874 |
| HspAI | GCGC | 2 cut(s) | 84, 91 |
| Ksp22I | TGATCA | 2 cut(s) | 514, 829 |
| Kzo9I | GATC | 5 cut(s) | 514, 597, 612, 829, 898 |
| LmnI | GCTCC | 3 cut(s) | 80, 307, 660 |
| Lsp1109I | GCAGC | 3 cut(s) | 5, 59, 305 |
| LweI | GCATC | 4 cut(s) | 71, 319, 661, 880 |
| MaeI | CTAG | 1 cut(s) | 554 |
| MaeIII | GTNAC | 1 cut(s) | 45 |
| MalI | GATC | 5 cut(s) | 516, 599, 614, 831, 900 |
| MboI | GATC | 5 cut(s) | 514, 597, 612, 829, 898 |
| MboII | GAAGA | 4 cut(s) | 122, 147, 310, 372 |
| MhlI | GDGCHC | 1 cut(s) | 312 |
| MluCI | AATT | 4 cut(s) | 280, 346, 368, 933 |
| MmeI | TCCRAC | 1 cut(s) | 655 |
| MseI | TTAA | 3 cut(s) | 324, 932, 957 |
| MslI | CAYNNNNRTG | 2 cut(s) | 389, 837 |
| MspCI | CTTAAG | 1 cut(s) | 956 |
| MspI | CCGG | 3 cut(s) | 136, 504, 641 |
| MspR9I | CCNGG | 2 cut(s) | 136, 642 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 27, 81, 90, 349 |
| NciI | CCSGG | 2 cut(s) | 136, 642 |
| NdeI | CATATG | 2 cut(s) | 190, 919 |
| NdeII | GATC | 5 cut(s) | 514, 597, 612, 829, 898 |
| NlaIII | CATG | 6 cut(s) | 10, 307, 394, 512, 662, 874 |
| NlaIV | GGNNCC | 1 cut(s) | 868 |
| NsbI | TGCGCA | 1 cut(s) | 85 |
| NspI | RCATGY | 1 cut(s) | 394 |
| PaeI | GCATGC | 1 cut(s) | 394 |
| PaeR7I | CTCGAG | 1 cut(s) | 311 |
| PceI | AGGCCT | 1 cut(s) | 1036 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 546, 555 |
| PfeI | GAWTC | 2 cut(s) | 482, 977 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 876 |
| PkrI | GCNGC | 4 cut(s) | 20, 74, 320, 731 |
| PshBI | ATTAAT | 1 cut(s) | 324 |
| PsiI | TTATAA | 1 cut(s) | 285 |
| Psp124BI | GAGCTC | 1 cut(s) | 312 |
| PspN4I | GGNNCC | 1 cut(s) | 868 |
| PspPI | GGNCC | 1 cut(s) | 751 |
| PspXI | VCTCGAGB | 1 cut(s) | 311 |
| PstI | CTGCAG | 1 cut(s) | 45 |
| RsaI | GTAC | 1 cut(s) | 688 |
| RsaNI | GTAC | 1 cut(s) | 687 |
| RseI | CAYNNNNRTG | 2 cut(s) | 389, 837 |
| SacI | GAGCTC | 1 cut(s) | 312 |
| SaqAI | TTAA | 3 cut(s) | 324, 932, 957 |
| SatI | GCNGC | 4 cut(s) | 19, 73, 319, 730 |
| Sau3AI | GATC | 5 cut(s) | 514, 597, 612, 829, 898 |
| Sau96I | GGNCC | 1 cut(s) | 751 |
| ScrFI | CCNGG | 2 cut(s) | 136, 642 |
| SduI | GDGCHC | 1 cut(s) | 312 |
| SfaNI | GCATC | 4 cut(s) | 71, 319, 661, 880 |
| SfcI | CTRYAG | 4 cut(s) | 41, 51, 843, 1046 |
| Sfr274I | CTCGAG | 1 cut(s) | 311 |
| SinI | GGWCC | 1 cut(s) | 751 |
| SlaI | CTCGAG | 1 cut(s) | 311 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 389, 837 |
| SmlI | CTYRAG | 3 cut(s) | 103, 311, 956 |
| SmoI | CTYRAG | 3 cut(s) | 103, 311, 956 |
| SphI | GCATGC | 1 cut(s) | 394 |
| Sse9I | AATT | 4 cut(s) | 280, 346, 368, 933 |
| SseBI | AGGCCT | 1 cut(s) | 1036 |
| SsiI | CCGC | 5 cut(s) | 172, 220, 230, 645, 729 |
| SspMI | CTAG | 1 cut(s) | 554 |
| SstI | GAGCTC | 1 cut(s) | 312 |
| StuI | AGGCCT | 1 cut(s) | 1036 |
| StyD4I | CCNGG | 2 cut(s) | 134, 640 |
| TaaI | ACNGT | 3 cut(s) | 683, 691, 952 |
| TaqI | TCGA | 2 cut(s) | 312, 888 |
| TasI | AATT | 4 cut(s) | 280, 346, 368, 933 |
| TauI | GCSGC | 1 cut(s) | 732 |
| TfiI | GAWTC | 2 cut(s) | 482, 977 |
| Tru1I | TTAA | 3 cut(s) | 324, 932, 957 |
| Tru9I | TTAA | 3 cut(s) | 324, 932, 957 |
| TscAI | CASTG | 4 cut(s) | 403, 453, 688, 842 |
| TseI | GCWGC | 3 cut(s) | 18, 72, 318 |
| TspDTI | ATGAA | 2 cut(s) | 633, 874 |
| TspGWI | ACGGA | 2 cut(s) | 970, 989 |
| TspRI | CASTG | 4 cut(s) | 403, 453, 688, 842 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 876 |
| Vha464I | CTTAAG | 1 cut(s) | 956 |
| VpaK11BI | GGWCC | 1 cut(s) | 751 |
| VspI | ATTAAT | 1 cut(s) | 324 |
| XapI | RAATTY | 2 cut(s) | 346, 368 |
| XceI | RCATGY | 1 cut(s) | 394 |
| XhoI | CTCGAG | 1 cut(s) | 311 |
| XspI | CTAG | 1 cut(s) | 554 |