Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 541 |
| AccIII | TCCGGA | 2 cut(s) | 114, 178 |
| AclWI | GGATC | 6 cut(s) | 160, 173, 353, 440, 517, 530 |
| AfaI | GTAC | 2 cut(s) | 203, 215 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 121, 156 |
| AgsI | TTSAA | 2 cut(s) | 133, 482 |
| AjnI | CCWGG | 1 cut(s) | 105 |
| AluBI | AGCT | 4 cut(s) | 9, 68, 79, 403 |
| AluI | AGCT | 4 cut(s) | 9, 68, 79, 403 |
| AlwI | GGATC | 6 cut(s) | 160, 173, 353, 440, 517, 530 |
| Aor13HI | TCCGGA | 2 cut(s) | 114, 178 |
| AoxI | GGCC | 2 cut(s) | 103, 207 |
| AspS9I | GGNCC | 2 cut(s) | 421, 550 |
| AsuNHI | GCTAGC | 1 cut(s) | 64 |
| AvaII | GGWCC | 2 cut(s) | 421, 550 |
| AxyI | CCTNAGG | 1 cut(s) | 546 |
| BamHI | GGATCC | 2 cut(s) | 165, 522 |
| BciT130I | CCWGG | 1 cut(s) | 107 |
| BciVI | GTATCC | 1 cut(s) | 312 |
| BfaI | CTAG | 5 cut(s) | 65, 146, 195, 243, 537 |
| BfuI | GTATCC | 1 cut(s) | 312 |
| BmcAI | AGTACT | 1 cut(s) | 215 |
| Bme1390I | CCNGG | 1 cut(s) | 107 |
| Bme18I | GGWCC | 2 cut(s) | 421, 550 |
| BmgT120I | GGNCC | 2 cut(s) | 421, 550 |
| BmiI | GGNNCC | 2 cut(s) | 167, 524 |
| BmrFI | CCNGG | 1 cut(s) | 107 |
| BmsI | GCATC | 1 cut(s) | 574 |
| BmtI | GCTAGC | 1 cut(s) | 68 |
| BsaJI | CCNNGG | 2 cut(s) | 106, 362 |
| BsaWI | WCCGGW | 2 cut(s) | 114, 178 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 121, 156 |
| Bse1I | ACTGG | 1 cut(s) | 560 |
| Bse21I | CCTNAGG | 1 cut(s) | 546 |
| Bse3DI | GCAATG | 1 cut(s) | 337 |
| BseAI | TCCGGA | 2 cut(s) | 114, 178 |
| BseBI | CCWGG | 1 cut(s) | 107 |
| BseDI | CCNNGG | 2 cut(s) | 106, 362 |
| BseGI | GGATG | 1 cut(s) | 204 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 121, 156 |
| BseMI | GCAATG | 1 cut(s) | 337 |
| BseMII | CTCAG | 1 cut(s) | 537 |
| BseNI | ACTGG | 1 cut(s) | 560 |
| BseYI | CCCAGC | 1 cut(s) | 248 |
| BshFI | GGCC | 2 cut(s) | 105, 209 |
| BsiSI | CCGG | 2 cut(s) | 115, 179 |
| BslFI | GGGAC | 1 cut(s) | 324 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 121, 156 |
| BsmFI | GGGAC | 1 cut(s) | 324 |
| BsmI | GAATGC | 1 cut(s) | 279 |
| BsnI | GGCC | 2 cut(s) | 105, 209 |
| Bsp13I | TCCGGA | 2 cut(s) | 114, 178 |
| Bsp1407I | TGTACA | 1 cut(s) | 201 |
| Bsp143I | GATC | 4 cut(s) | 165, 358, 445, 522 |
| BspANI | GGCC | 2 cut(s) | 105, 209 |
| BspCNI | CTCAG | 1 cut(s) | 538 |
| BspEI | TCCGGA | 2 cut(s) | 114, 178 |
| BspHI | TCATGA | 1 cut(s) | 568 |
| BspLI | GGNNCC | 2 cut(s) | 167, 524 |
| BspOI | GCTAGC | 1 cut(s) | 68 |
| BspPI | GGATC | 6 cut(s) | 160, 173, 353, 440, 517, 530 |
| BsrDI | GCAATG | 1 cut(s) | 337 |
| BsrGI | TGTACA | 1 cut(s) | 201 |
| BsrI | ACTGG | 1 cut(s) | 560 |
| BssECI | CCNNGG | 2 cut(s) | 106, 362 |
| BssMI | GATC | 4 cut(s) | 165, 358, 445, 522 |
| Bst2UI | CCWGG | 1 cut(s) | 107 |
| Bst4CI | ACNGT | 2 cut(s) | 372, 383 |
| Bst6I | CTCTTC | 1 cut(s) | 248 |
| BstAUI | TGTACA | 1 cut(s) | 201 |
| BstC8I | GCNNGC | 1 cut(s) | 66 |
| BstDEI | CTNAG | 2 cut(s) | 399, 546 |
| BstDSI | CCRYGG | 1 cut(s) | 362 |
| BstF5I | GGATG | 1 cut(s) | 204 |
| BstKTI | GATC | 4 cut(s) | 168, 361, 448, 525 |
| BstMBI | GATC | 4 cut(s) | 165, 358, 445, 522 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 146, 298 |
| BstNI | CCWGG | 1 cut(s) | 107 |
| BstSCI | CCNGG | 1 cut(s) | 105 |
| BstX2I | RGATCY | 3 cut(s) | 165, 445, 522 |
| BstYI | RGATCY | 3 cut(s) | 165, 445, 522 |
| Bsu36I | CCTNAGG | 1 cut(s) | 546 |
| BsuI | GTATCC | 1 cut(s) | 312 |
| BsuRI | GGCC | 2 cut(s) | 105, 209 |
| BtgI | CCRYGG | 1 cut(s) | 362 |
| BtsCI | GGATG | 1 cut(s) | 204 |
| BtsIMutI | CAGTG | 1 cut(s) | 553 |
| Cac8I | GCNNGC | 1 cut(s) | 66 |
| CciI | TCATGA | 1 cut(s) | 568 |
| Cfr13I | GGNCC | 2 cut(s) | 421, 550 |
| Csp6I | GTAC | 2 cut(s) | 202, 214 |
| CviAII | CATG | 4 cut(s) | 270, 287, 511, 569 |
| CviQI | GTAC | 2 cut(s) | 202, 214 |
| DdeI | CTNAG | 2 cut(s) | 399, 546 |
| DpnI | GATC | 4 cut(s) | 167, 360, 447, 524 |
| DpnII | GATC | 4 cut(s) | 165, 358, 445, 522 |
| Eam1104I | CTCTTC | 1 cut(s) | 248 |
| EarI | CTCTTC | 1 cut(s) | 248 |
| Eco147I | AGGCCT | 1 cut(s) | 105 |
| Eco47I | GGWCC | 2 cut(s) | 421, 550 |
| Eco81I | CCTNAGG | 1 cut(s) | 546 |
| EcoO109I | RGGNCCY | 1 cut(s) | 421 |
| EcoRII | CCWGG | 1 cut(s) | 105 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 271 |
| FaeI | CATG | 4 cut(s) | 273, 290, 514, 572 |
| FaqI | GGGAC | 1 cut(s) | 324 |
| FatI | CATG | 4 cut(s) | 269, 286, 510, 568 |
| FauNDI | CATATG | 1 cut(s) | 265 |
| FblI | GTMKAC | 1 cut(s) | 541 |
| FokI | GGATG | 1 cut(s) | 211 |
| FspBI | CTAG | 5 cut(s) | 65, 146, 195, 243, 537 |
| GsaI | CCCAGC | 1 cut(s) | 252 |
| HaeIII | GGCC | 2 cut(s) | 105, 209 |
| HapII | CCGG | 2 cut(s) | 115, 179 |
| Hin1II | CATG | 4 cut(s) | 273, 290, 514, 572 |
| HincII | GTYRAC | 1 cut(s) | 542 |
| HindII | GTYRAC | 1 cut(s) | 542 |
| HindIII | AAGCTT | 1 cut(s) | 401 |
| HinfI | GANTC | 1 cut(s) | 182 |
| HpaII | CCGG | 2 cut(s) | 115, 179 |
| Hpy166II | GTNNAC | 2 cut(s) | 508, 542 |
| Hpy188I | TCNGA | 2 cut(s) | 97, 318 |
| Hpy188III | TCNNGA | 6 cut(s) | 115, 179, 220, 449, 526, 569 |
| Hpy8I | GTNNAC | 2 cut(s) | 508, 542 |
| HpyAV | CCTTC | 2 cut(s) | 92, 232 |
| HpyCH4III | ACNGT | 2 cut(s) | 372, 383 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 269, 286 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 146, 298 |
| HpyF3I | CTNAG | 2 cut(s) | 399, 546 |
| Hsp92II | CATG | 4 cut(s) | 273, 290, 514, 572 |
| Kpn2I | TCCGGA | 2 cut(s) | 114, 178 |
| Kzo9I | GATC | 4 cut(s) | 165, 358, 445, 522 |
| LweI | GCATC | 1 cut(s) | 574 |
| MaeI | CTAG | 5 cut(s) | 65, 146, 195, 243, 537 |
| MaeIII | GTNAC | 1 cut(s) | 366 |
| MalI | GATC | 4 cut(s) | 167, 360, 447, 524 |
| MboI | GATC | 4 cut(s) | 165, 358, 445, 522 |
| MboII | GAAGA | 4 cut(s) | 61, 85, 265, 494 |
| MflI | RGATCY | 3 cut(s) | 165, 445, 522 |
| MluCI | AATT | 1 cut(s) | 324 |
| MnlI | CCTC | 9 cut(s) | 95, 156, 271, 387, 403, 412, 427, 496, 541 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 271 |
| MroI | TCCGGA | 2 cut(s) | 114, 178 |
| MseI | TTAA | 3 cut(s) | 11, 171, 473 |
| MslI | CAYNNNNRTG | 2 cut(s) | 268, 291 |
| MspI | CCGG | 2 cut(s) | 115, 179 |
| MspR9I | CCNGG | 1 cut(s) | 107 |
| Mva1269I | GAATGC | 1 cut(s) | 279 |
| MvaI | CCWGG | 1 cut(s) | 107 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 146, 298 |
| NdeI | CATATG | 1 cut(s) | 265 |
| NdeII | GATC | 4 cut(s) | 165, 358, 445, 522 |
| NheI | GCTAGC | 1 cut(s) | 64 |
| NlaIII | CATG | 4 cut(s) | 273, 290, 514, 572 |
| NlaIV | GGNNCC | 2 cut(s) | 167, 524 |
| NsiI | ATGCAT | 2 cut(s) | 6, 271 |
| PagI | TCATGA | 1 cut(s) | 568 |
| PceI | AGGCCT | 1 cut(s) | 105 |
| PctI | GAATGC | 1 cut(s) | 279 |
| PfeI | GAWTC | 1 cut(s) | 182 |
| PpuMI | RGGWCCY | 1 cut(s) | 421 |
| Psp5II | RGGWCCY | 1 cut(s) | 421 |
| Psp6I | CCWGG | 1 cut(s) | 105 |
| PspFI | CCCAGC | 1 cut(s) | 248 |
| PspGI | CCWGG | 1 cut(s) | 105 |
| PspN4I | GGNNCC | 2 cut(s) | 167, 524 |
| PspPI | GGNCC | 2 cut(s) | 421, 550 |
| PspPPI | RGGWCCY | 1 cut(s) | 421 |
| PsuI | RGATCY | 3 cut(s) | 165, 445, 522 |
| RsaI | GTAC | 2 cut(s) | 203, 215 |
| RsaNI | GTAC | 2 cut(s) | 202, 214 |
| RseI | CAYNNNNRTG | 2 cut(s) | 268, 291 |
| SalI | GTCGAC | 1 cut(s) | 540 |
| SaqAI | TTAA | 3 cut(s) | 11, 171, 473 |
| Sau3AI | GATC | 4 cut(s) | 165, 358, 445, 522 |
| Sau96I | GGNCC | 2 cut(s) | 421, 550 |
| ScaI | AGTACT | 1 cut(s) | 215 |
| ScrFI | CCNGG | 1 cut(s) | 107 |
| SfaNI | GCATC | 1 cut(s) | 574 |
| SinI | GGWCC | 2 cut(s) | 421, 550 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 268, 291 |
| Sse9I | AATT | 1 cut(s) | 324 |
| SseBI | AGGCCT | 1 cut(s) | 105 |
| SspMI | CTAG | 5 cut(s) | 65, 146, 195, 243, 537 |
| StuI | AGGCCT | 1 cut(s) | 105 |
| StyD4I | CCNGG | 1 cut(s) | 105 |
| TaaI | ACNGT | 2 cut(s) | 372, 383 |
| TaqI | TCGA | 1 cut(s) | 541 |
| TasI | AATT | 1 cut(s) | 324 |
| TatI | WGTACW | 2 cut(s) | 201, 213 |
| TfiI | GAWTC | 1 cut(s) | 182 |
| Tru1I | TTAA | 3 cut(s) | 11, 171, 473 |
| Tru9I | TTAA | 3 cut(s) | 11, 171, 473 |
| TscAI | CASTG | 1 cut(s) | 560 |
| TspDTI | ATGAA | 1 cut(s) | 251 |
| TspGWI | ACGGA | 1 cut(s) | 351 |
| TspRI | CASTG | 1 cut(s) | 560 |
| VpaK11BI | GGWCC | 2 cut(s) | 421, 550 |
| XmiI | GTMKAC | 1 cut(s) | 541 |
| XspI | CTAG | 5 cut(s) | 65, 146, 195, 243, 537 |
| ZrmI | AGTACT | 1 cut(s) | 215 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 271 |