Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 184 |
| Acc65I | GGTACC | 1 cut(s) | 600 |
| AccB1I | GGYRCC | 2 cut(s) | 600, 689 |
| AccI | GTMKAC | 1 cut(s) | 362 |
| AciI | CCGC | 7 cut(s) | 563, 580, 598, 642, 669, 678, 698 |
| AclWI | GGATC | 1 cut(s) | 119 |
| AcoI | YGGCCR | 1 cut(s) | 560 |
| AcuI | CTGAAG | 1 cut(s) | 282 |
| AcyI | GRCGYC | 1 cut(s) | 657 |
| AfaI | GTAC | 1 cut(s) | 602 |
| AflIII | ACRYGT | 1 cut(s) | 452 |
| AgsI | TTSAA | 2 cut(s) | 16, 448 |
| AjnI | CCWGG | 2 cut(s) | 566, 692 |
| AluBI | AGCT | 4 cut(s) | 26, 311, 352, 514 |
| AluI | AGCT | 4 cut(s) | 26, 311, 352, 514 |
| Alw26I | GTCTC | 1 cut(s) | 316 |
| AlwI | GGATC | 1 cut(s) | 119 |
| Ama87I | CYCGRG | 1 cut(s) | 613 |
| AoxI | GGCC | 4 cut(s) | 560, 569, 670, 680 |
| ApeKI | GCWGC | 3 cut(s) | 133, 200, 514 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 283 |
| Asp718I | GGTACC | 1 cut(s) | 600 |
| AspA2I | CCTAGG | 2 cut(s) | 664, 673 |
| AspLEI | GCGC | 2 cut(s) | 593, 708 |
| AspS9I | GGNCC | 2 cut(s) | 271, 680 |
| AvaI | CYCGRG | 1 cut(s) | 613 |
| AvaII | GGWCC | 1 cut(s) | 271 |
| AvrII | CCTAGG | 2 cut(s) | 664, 673 |
| BanI | GGYRCC | 2 cut(s) | 600, 689 |
| BanII | GRGCYC | 2 cut(s) | 385, 528 |
| BbvI | GCAGC | 3 cut(s) | 120, 187, 501 |
| BceAI | ACGGC | 1 cut(s) | 556 |
| BciT130I | CCWGG | 2 cut(s) | 568, 694 |
| BcoDI | GTCTC | 1 cut(s) | 316 |
| BfaI | CTAG | 7 cut(s) | 9, 576, 587, 665, 674, 686, 709 |
| BfoI | RGCGCY | 2 cut(s) | 594, 709 |
| BfuAI | ACCTGC | 1 cut(s) | 184 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 523, 568, 577 |
| BisI | GCNGC | 5 cut(s) | 134, 201, 515, 563, 670 |
| BlnI | CCTAGG | 2 cut(s) | 664, 673 |
| BlsI | GCNGC | 5 cut(s) | 135, 202, 516, 564, 671 |
| Bme1390I | CCNGG | 2 cut(s) | 568, 694 |
| Bme18I | GGWCC | 1 cut(s) | 271 |
| BmeT110I | CYCGRG | 1 cut(s) | 613 |
| BmgT120I | GGNCC | 2 cut(s) | 271, 680 |
| BmiI | GGNNCC | 4 cut(s) | 291, 382, 602, 691 |
| BmrFI | CCNGG | 2 cut(s) | 568, 694 |
| BmsI | GCATC | 1 cut(s) | 482 |
| BpmI | CTGGAG | 1 cut(s) | 425 |
| BsaAI | YACGTR | 1 cut(s) | 455 |
| BsaBI | GATNNNNATC | 1 cut(s) | 107 |
| BsaHI | GRCGYC | 1 cut(s) | 657 |
| BsaJI | CCNNGG | 6 cut(s) | 128, 385, 566, 664, 673, 693 |
| BsaWI | WCCGGW | 1 cut(s) | 53 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 26 |
| Bse1I | ACTGG | 1 cut(s) | 370 |
| Bse3DI | GCAATG | 1 cut(s) | 137 |
| Bse8I | GATNNNNATC | 1 cut(s) | 107 |
| BseBI | CCWGG | 2 cut(s) | 568, 694 |
| BseDI | CCNNGG | 6 cut(s) | 128, 385, 566, 664, 673, 693 |
| BseGI | GGATG | 2 cut(s) | 108, 497 |
| BseJI | GATNNNNATC | 1 cut(s) | 107 |
| BseMI | GCAATG | 1 cut(s) | 137 |
| BseMII | CTCAG | 1 cut(s) | 126 |
| BseNI | ACTGG | 1 cut(s) | 370 |
| BseRI | GAGGAG | 2 cut(s) | 362, 647 |
| BseX3I | CGGCCG | 1 cut(s) | 560 |
| BseXI | GCAGC | 3 cut(s) | 120, 187, 501 |
| BseYI | CCCAGC | 2 cut(s) | 593, 646 |
| Bsh1285I | CGRYCG | 2 cut(s) | 319, 563 |
| BshFI | GGCC | 4 cut(s) | 562, 571, 672, 682 |
| BshNI | GGYRCC | 2 cut(s) | 600, 689 |
| BsiEI | CGRYCG | 2 cut(s) | 319, 563 |
| BsiHKCI | CYCGRG | 1 cut(s) | 613 |
| BsiSI | CCGG | 2 cut(s) | 54, 507 |
| BslFI | GGGAC | 1 cut(s) | 193 |
| BsmAI | GTCTC | 1 cut(s) | 316 |
| BsmFI | GGGAC | 1 cut(s) | 193 |
| BsmI | GAATGC | 1 cut(s) | 78 |
| BsnI | GGCC | 4 cut(s) | 562, 571, 672, 682 |
| BsoBI | CYCGRG | 1 cut(s) | 613 |
| Bsp1286I | GDGCHC | 2 cut(s) | 385, 528 |
| Bsp143I | GATC | 2 cut(s) | 124, 316 |
| BspACI | CCGC | 7 cut(s) | 563, 580, 598, 642, 669, 678, 698 |
| BspANI | GGCC | 4 cut(s) | 562, 571, 672, 682 |
| BspCNI | CTCAG | 1 cut(s) | 125 |
| BspLI | GGNNCC | 4 cut(s) | 291, 382, 602, 691 |
| BspMI | ACCTGC | 1 cut(s) | 184 |
| BspPI | GGATC | 1 cut(s) | 119 |
| BspT107I | GGYRCC | 2 cut(s) | 600, 689 |
| BsrDI | GCAATG | 1 cut(s) | 137 |
| BsrI | ACTGG | 1 cut(s) | 370 |
| BssECI | CCNNGG | 6 cut(s) | 128, 385, 566, 664, 673, 693 |
| BssMI | GATC | 2 cut(s) | 124, 316 |
| BssNAI | GTATAC | 1 cut(s) | 363 |
| BssNI | GRCGYC | 1 cut(s) | 657 |
| BssT1I | CCWWGG | 3 cut(s) | 385, 664, 673 |
| Bst1107I | GTATAC | 1 cut(s) | 363 |
| Bst2UI | CCWGG | 2 cut(s) | 568, 694 |
| Bst6I | CTCTTC | 1 cut(s) | 210 |
| BstACI | GRCGYC | 1 cut(s) | 657 |
| BstBAI | YACGTR | 1 cut(s) | 455 |
| BstC8I | GCNNGC | 4 cut(s) | 441, 512, 644, 680 |
| BstDEI | CTNAG | 1 cut(s) | 112 |
| BstDSI | CCRYGG | 1 cut(s) | 128 |
| BstF5I | GGATG | 2 cut(s) | 108, 497 |
| BstH2I | RGCGCY | 2 cut(s) | 594, 709 |
| BstHHI | GCGC | 2 cut(s) | 593, 708 |
| BstKTI | GATC | 2 cut(s) | 127, 319 |
| BstMAI | GTCTC | 1 cut(s) | 316 |
| BstMBI | GATC | 2 cut(s) | 124, 316 |
| BstMCI | CGRYCG | 2 cut(s) | 319, 563 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 139, 523, 568, 577, 675 |
| BstNI | CCWGG | 2 cut(s) | 568, 694 |
| BstNSI | RCATGY | 1 cut(s) | 443 |
| BstSCI | CCNGG | 2 cut(s) | 566, 692 |
| BstV1I | GCAGC | 3 cut(s) | 120, 187, 501 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 95 |
| BstZ17I | GTATAC | 1 cut(s) | 363 |
| BstZI | CGGCCG | 1 cut(s) | 560 |
| BsuRI | GGCC | 4 cut(s) | 562, 571, 672, 682 |
| BtgI | CCRYGG | 1 cut(s) | 128 |
| BtsCI | GGATG | 2 cut(s) | 108, 497 |
| BtsIMutI | CAGTG | 3 cut(s) | 120, 480, 551 |
| BveI | ACCTGC | 1 cut(s) | 184 |
| Cac8I | GCNNGC | 4 cut(s) | 441, 512, 644, 680 |
| CfoI | GCGC | 2 cut(s) | 593, 708 |
| Cfr13I | GGNCC | 2 cut(s) | 271, 680 |
| CseI | GACGC | 1 cut(s) | 646 |
| Csp6I | GTAC | 1 cut(s) | 601 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 469, 504 |
| CviAII | CATG | 1 cut(s) | 440 |
| CviQI | GTAC | 1 cut(s) | 601 |
| DdeI | CTNAG | 1 cut(s) | 112 |
| DpnI | GATC | 2 cut(s) | 126, 318 |
| DpnII | GATC | 2 cut(s) | 124, 316 |
| EaeI | YGGCCR | 1 cut(s) | 560 |
| EagI | CGGCCG | 1 cut(s) | 560 |
| Eam1104I | CTCTTC | 1 cut(s) | 210 |
| EarI | CTCTTC | 1 cut(s) | 210 |
| EclXI | CGGCCG | 1 cut(s) | 560 |
| Eco130I | CCWWGG | 3 cut(s) | 385, 664, 673 |
| Eco24I | GRGCYC | 2 cut(s) | 385, 528 |
| Eco47I | GGWCC | 1 cut(s) | 271 |
| Eco52I | CGGCCG | 1 cut(s) | 560 |
| Eco57I | CTGAAG | 1 cut(s) | 282 |
| Eco88I | CYCGRG | 1 cut(s) | 613 |
| EcoRII | CCWGG | 2 cut(s) | 566, 692 |
| EcoT14I | CCWWGG | 3 cut(s) | 385, 664, 673 |
| EcoT22I | ATGCAT | 1 cut(s) | 445 |
| EcoT38I | GRGCYC | 2 cut(s) | 385, 528 |
| ErhI | CCWWGG | 3 cut(s) | 385, 664, 673 |
| FaeI | CATG | 1 cut(s) | 443 |
| FaiI | YATR | 6 cut(s) | 31, 33, 363, 417, 441, 522 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 268, 300 |
| FaqI | GGGAC | 1 cut(s) | 193 |
| FatI | CATG | 1 cut(s) | 439 |
| FauI | CCCGC | 2 cut(s) | 635, 671 |
| FblI | GTMKAC | 1 cut(s) | 362 |
| Fnu4HI | GCNGC | 5 cut(s) | 134, 201, 515, 563, 670 |
| FokI | GGATG | 2 cut(s) | 115, 504 |
| FriOI | GRGCYC | 2 cut(s) | 385, 528 |
| Fsp4HI | GCNGC | 5 cut(s) | 134, 201, 515, 563, 670 |
| FspBI | CTAG | 7 cut(s) | 9, 576, 587, 665, 674, 686, 709 |
| GlaI | GCGC | 2 cut(s) | 592, 707 |
| GluI | GCNGC | 5 cut(s) | 134, 201, 515, 563, 670 |
| GsaI | CCCAGC | 2 cut(s) | 597, 650 |
| GsuI | CTGGAG | 1 cut(s) | 425 |
| HaeII | RGCGCY | 2 cut(s) | 594, 709 |
| HaeIII | GGCC | 4 cut(s) | 562, 571, 672, 682 |
| HapII | CCGG | 2 cut(s) | 54, 507 |
| HgaI | GACGC | 1 cut(s) | 646 |
| HhaI | GCGC | 2 cut(s) | 593, 708 |
| Hin1I | GRCGYC | 1 cut(s) | 657 |
| Hin1II | CATG | 1 cut(s) | 443 |
| Hin6I | GCGC | 2 cut(s) | 591, 706 |
| HinP1I | GCGC | 2 cut(s) | 591, 706 |
| HinfI | GANTC | 2 cut(s) | 503, 611 |
| HpaII | CCGG | 2 cut(s) | 54, 507 |
| Hpy166II | GTNNAC | 1 cut(s) | 363 |
| Hpy188I | TCNGA | 3 cut(s) | 321, 336, 610 |
| Hpy188III | TCNNGA | 1 cut(s) | 404 |
| Hpy8I | GTNNAC | 1 cut(s) | 363 |
| HpyAV | CCTTC | 3 cut(s) | 10, 311, 331 |
| HpyCH4IV | ACGT | 1 cut(s) | 454 |
| HpyCH4V | TGCA | 3 cut(s) | 70, 203, 443 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 139, 523, 568, 577, 675 |
| HpyF3I | CTNAG | 1 cut(s) | 112 |
| HpySE526I | ACGT | 1 cut(s) | 454 |
| Hsp92I | GRCGYC | 1 cut(s) | 657 |
| Hsp92II | CATG | 1 cut(s) | 443 |
| HspAI | GCGC | 2 cut(s) | 591, 706 |
| KpnI | GGTACC | 1 cut(s) | 604 |
| Kzo9I | GATC | 2 cut(s) | 124, 316 |
| LmnI | GCTCC | 3 cut(s) | 23, 349, 380 |
| Lsp1109I | GCAGC | 3 cut(s) | 120, 187, 501 |
| LweI | GCATC | 1 cut(s) | 482 |
| MaeI | CTAG | 7 cut(s) | 9, 576, 587, 665, 674, 686, 709 |
| MaeII | ACGT | 1 cut(s) | 454 |
| MalI | GATC | 2 cut(s) | 126, 318 |
| MboI | GATC | 2 cut(s) | 124, 316 |
| MboII | GAAGA | 2 cut(s) | 197, 227 |
| MhlI | GDGCHC | 2 cut(s) | 385, 528 |
| MluCI | AATT | 6 cut(s) | 251, 279, 472, 486, 538, 626 |
| MlyI | GAGTC | 1 cut(s) | 605 |
| MmeI | TCCRAC | 1 cut(s) | 633 |
| Mph1103I | ATGCAT | 1 cut(s) | 445 |
| MroXI | GAANNNNTTC | 1 cut(s) | 283 |
| MspI | CCGG | 2 cut(s) | 54, 507 |
| MspR9I | CCNGG | 2 cut(s) | 568, 694 |
| Mva1269I | GAATGC | 1 cut(s) | 78 |
| MvaI | CCWGG | 2 cut(s) | 568, 694 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 139, 523, 568, 577, 675 |
| NdeII | GATC | 2 cut(s) | 124, 316 |
| NlaIII | CATG | 1 cut(s) | 443 |
| NlaIV | GGNNCC | 4 cut(s) | 291, 382, 602, 691 |
| NmeAIII | GCCGAG | 1 cut(s) | 538 |
| NsiI | ATGCAT | 1 cut(s) | 445 |
| NspI | RCATGY | 1 cut(s) | 443 |
| PaeI | GCATGC | 1 cut(s) | 443 |
| PaeR7I | CTCGAG | 1 cut(s) | 613 |
| PctI | GAATGC | 1 cut(s) | 78 |
| PdmI | GAANNNNTTC | 1 cut(s) | 283 |
| PfeI | GAWTC | 1 cut(s) | 503 |
| PkrI | GCNGC | 5 cut(s) | 135, 202, 516, 564, 671 |
| Ple19I | CGATCG | 1 cut(s) | 319 |
| PleI | GAGTC | 1 cut(s) | 605 |
| PpsI | GAGTC | 1 cut(s) | 605 |
| Ppu21I | YACGTR | 1 cut(s) | 455 |
| Psp6I | CCWGG | 2 cut(s) | 566, 692 |
| PspFI | CCCAGC | 2 cut(s) | 593, 646 |
| PspGI | CCWGG | 2 cut(s) | 566, 692 |
| PspN4I | GGNNCC | 4 cut(s) | 291, 382, 602, 691 |
| PspPI | GGNCC | 2 cut(s) | 271, 680 |
| PspXI | VCTCGAGB | 1 cut(s) | 613 |
| PvuI | CGATCG | 1 cut(s) | 319 |
| RsaI | GTAC | 1 cut(s) | 602 |
| RsaNI | GTAC | 1 cut(s) | 601 |
| SatI | GCNGC | 5 cut(s) | 134, 201, 515, 563, 670 |
| Sau3AI | GATC | 2 cut(s) | 124, 316 |
| Sau96I | GGNCC | 2 cut(s) | 271, 680 |
| SchI | GAGTC | 1 cut(s) | 605 |
| ScrFI | CCNGG | 2 cut(s) | 568, 694 |
| SduI | GDGCHC | 2 cut(s) | 385, 528 |
| SfaNI | GCATC | 1 cut(s) | 482 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 568 |
| Sfr274I | CTCGAG | 1 cut(s) | 613 |
| SinI | GGWCC | 1 cut(s) | 271 |
| SlaI | CTCGAG | 1 cut(s) | 613 |
| SmlI | CTYRAG | 1 cut(s) | 613 |
| SmoI | CTYRAG | 1 cut(s) | 613 |
| SphI | GCATGC | 1 cut(s) | 443 |
| Sse9I | AATT | 6 cut(s) | 251, 279, 472, 486, 538, 626 |
| SsiI | CCGC | 7 cut(s) | 563, 580, 598, 642, 669, 678, 698 |
| SspMI | CTAG | 7 cut(s) | 9, 576, 587, 665, 674, 686, 709 |
| StyD4I | CCNGG | 2 cut(s) | 566, 692 |
| StyI | CCWWGG | 3 cut(s) | 385, 664, 673 |
| TaiI | ACGT | 1 cut(s) | 457 |
| TaqI | TCGA | 2 cut(s) | 304, 614 |
| TasI | AATT | 6 cut(s) | 251, 279, 472, 486, 538, 626 |
| TauI | GCSGC | 2 cut(s) | 565, 672 |
| TfiI | GAWTC | 1 cut(s) | 503 |
| TscAI | CASTG | 3 cut(s) | 120, 487, 551 |
| TseI | GCWGC | 3 cut(s) | 133, 200, 514 |
| TspDTI | ATGAA | 3 cut(s) | 18, 119, 228 |
| TspGWI | ACGGA | 2 cut(s) | 117, 188 |
| TspRI | CASTG | 3 cut(s) | 120, 487, 551 |
| VpaK11BI | GGWCC | 1 cut(s) | 271 |
| XceI | RCATGY | 1 cut(s) | 443 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 95, 690 |
| XhoI | CTCGAG | 1 cut(s) | 613 |
| XmaJI | CCTAGG | 2 cut(s) | 664, 673 |
| XmiI | GTMKAC | 1 cut(s) | 362 |
| XmnI | GAANNNNTTC | 1 cut(s) | 283 |
| XspI | CTAG | 7 cut(s) | 9, 576, 587, 665, 674, 686, 709 |
| Zsp2I | ATGCAT | 1 cut(s) | 445 |