Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 393 |
| Acc36I | ACCTGC | 1 cut(s) | 1837 |
| Acc65I | GGTACC | 1 cut(s) | 34 |
| AccB1I | GGYRCC | 1 cut(s) | 34 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1150, 1646 |
| AccI | GTMKAC | 2 cut(s) | 303, 850 |
| AccII | CGCG | 1 cut(s) | 223 |
| AciI | CCGC | 7 cut(s) | 32, 962, 1025, 1121, 1413, 1601, 1745 |
| AclWI | GGATC | 2 cut(s) | 945, 1844 |
| AcoI | YGGCCR | 1 cut(s) | 1569 |
| AcsI | RAATTY | 8 cut(s) | 252, 293, 379, 855, 991, 1245, 1377, 1574 |
| AdeI | CACNNNGTG | 1 cut(s) | 793 |
| AfaI | GTAC | 7 cut(s) | 36, 229, 241, 1497, 1599, 1617, 1851 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 783, 922, 1150, 1646 |
| AflII | CTTAAG | 1 cut(s) | 544 |
| AflIII | ACRYGT | 1 cut(s) | 221 |
| AgsI | TTSAA | 9 cut(s) | 10, 16, 98, 388, 529, 746, 773, 821, 1015 |
| AjnI | CCWGG | 1 cut(s) | 1143 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 847, 879, 1612, 1644 |
| AleI | CACNNNNGTG | 1 cut(s) | 1561 |
| AluBI | AGCT | 7 cut(s) | 285, 351, 1053, 1067, 1352, 1462, 1643 |
| AluI | AGCT | 7 cut(s) | 285, 351, 1053, 1067, 1352, 1462, 1643 |
| Alw21I | GWGCWC | 2 cut(s) | 933, 1776 |
| Alw26I | GTCTC | 4 cut(s) | 155, 1304, 1716, 1900 |
| Alw44I | GTGCAC | 1 cut(s) | 1772 |
| AlwI | GGATC | 2 cut(s) | 945, 1844 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1352 |
| AoxI | GGCC | 1 cut(s) | 1569 |
| ApaLI | GTGCAC | 1 cut(s) | 1772 |
| ApoI | RAATTY | 8 cut(s) | 252, 293, 379, 855, 991, 1245, 1377, 1574 |
| AseI | ATTAAT | 1 cut(s) | 71 |
| Asp718I | GGTACC | 1 cut(s) | 34 |
| AsuC2I | CCSGG | 1 cut(s) | 1233 |
| AsuHPI | GGTGA | 3 cut(s) | 565, 958, 1166 |
| AxyI | CCTNAGG | 1 cut(s) | 483 |
| BaeGI | GKGCMC | 1 cut(s) | 1776 |
| BanI | GGYRCC | 1 cut(s) | 34 |
| BanII | GRGCYC | 1 cut(s) | 1167 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1608, 1640 |
| BauI | CACGAG | 1 cut(s) | 1168 |
| Bbv12I | GWGCWC | 2 cut(s) | 933, 1776 |
| BccI | CCATC | 9 cut(s) | 635, 839, 916, 952, 965, 999, 1068, 1724, 1827 |
| BceAI | ACGGC | 2 cut(s) | 153, 813 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 910, 944, 979, 1013, 1835, 1869 |
| BciT130I | CCWGG | 1 cut(s) | 1145 |
| BciVI | GTATCC | 2 cut(s) | 1534, 1881 |
| BcnI | CCSGG | 1 cut(s) | 1233 |
| BcoDI | GTCTC | 4 cut(s) | 155, 1304, 1716, 1900 |
| BfaI | CTAG | 3 cut(s) | 425, 453, 1341 |
| BfrI | CTTAAG | 1 cut(s) | 544 |
| BfuAI | ACCTGC | 1 cut(s) | 1837 |
| BfuI | GTATCC | 2 cut(s) | 1534, 1881 |
| Bme1390I | CCNGG | 2 cut(s) | 1145, 1233 |
| BmiI | GGNNCC | 1 cut(s) | 36 |
| BmrFI | CCNGG | 2 cut(s) | 1145, 1233 |
| BmsI | GCATC | 2 cut(s) | 809, 1582 |
| BpmI | CTGGAG | 2 cut(s) | 1442, 1623 |
| Bpu10I | CCTNAGC | 2 cut(s) | 908, 1791 |
| BpuEI | CTTGAG | 3 cut(s) | 133, 1734, 1903 |
| BpuMI | CCSGG | 1 cut(s) | 1233 |
| BsaJI | CCNNGG | 3 cut(s) | 884, 1144, 1611 |
| BsaWI | WCCGGW | 1 cut(s) | 978 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 271, 301, 586, 616 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 783, 922, 1150, 1646 |
| Bse1I | ACTGG | 2 cut(s) | 323, 1475 |
| Bse21I | CCTNAGG | 1 cut(s) | 483 |
| Bse3DI | GCAATG | 3 cut(s) | 27, 492, 1923 |
| BseBI | CCWGG | 1 cut(s) | 1145 |
| BseDI | CCNNGG | 3 cut(s) | 884, 1144, 1611 |
| BseGI | GGATG | 5 cut(s) | 646, 850, 973, 1060, 1687 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 783, 922, 1150, 1646 |
| BseMI | GCAATG | 3 cut(s) | 27, 492, 1923 |
| BseMII | CTCAG | 4 cut(s) | 161, 474, 818, 1740 |
| BseNI | ACTGG | 2 cut(s) | 323, 1475 |
| BseRI | GAGGAG | 2 cut(s) | 213, 1600 |
| BseSI | GKGCMC | 1 cut(s) | 1776 |
| BsgI | GTGCAG | 2 cut(s) | 1764, 1788 |
| Bsh1236I | CGCG | 1 cut(s) | 223 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1385 |
| BshFI | GGCC | 1 cut(s) | 1571 |
| BshNI | GGYRCC | 1 cut(s) | 34 |
| BsiEI | CGRYCG | 1 cut(s) | 1385 |
| BsiHKAI | GWGCWC | 2 cut(s) | 933, 1776 |
| BsiSI | CCGG | 2 cut(s) | 979, 1232 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 783, 922, 1150, 1646 |
| BsmAI | GTCTC | 4 cut(s) | 155, 1304, 1716, 1900 |
| BsmBI | CGTCTC | 1 cut(s) | 1900 |
| BsmI | GAATGC | 1 cut(s) | 1276 |
| BsnI | GGCC | 1 cut(s) | 1571 |
| Bsp1286I | GDGCHC | 3 cut(s) | 933, 1167, 1776 |
| Bsp1407I | TGTACA | 1 cut(s) | 239 |
| Bsp143I | GATC | 4 cut(s) | 950, 1136, 1172, 1836 |
| BspACI | CCGC | 7 cut(s) | 32, 962, 1025, 1121, 1413, 1601, 1745 |
| BspANI | GGCC | 1 cut(s) | 1571 |
| BspCNI | CTCAG | 4 cut(s) | 162, 475, 817, 1739 |
| BspFNI | CGCG | 1 cut(s) | 223 |
| BspLI | GGNNCC | 1 cut(s) | 36 |
| BspMI | ACCTGC | 1 cut(s) | 1837 |
| BspPI | GGATC | 2 cut(s) | 945, 1844 |
| BspT107I | GGYRCC | 1 cut(s) | 34 |
| BspTI | CTTAAG | 1 cut(s) | 544 |
| BsrDI | GCAATG | 3 cut(s) | 27, 492, 1923 |
| BsrGI | TGTACA | 1 cut(s) | 239 |
| BsrI | ACTGG | 2 cut(s) | 323, 1475 |
| BssECI | CCNNGG | 3 cut(s) | 884, 1144, 1611 |
| BssMI | GATC | 4 cut(s) | 950, 1136, 1172, 1836 |
| BssSI | CACGAG | 1 cut(s) | 1168 |
| Bst2BI | CACGAG | 1 cut(s) | 1168 |
| Bst2UI | CCWGG | 1 cut(s) | 1145 |
| Bst4CI | ACNGT | 4 cut(s) | 685, 791, 946, 1315 |
| Bst6I | CTCTTC | 1 cut(s) | 1896 |
| BstAFI | CTTAAG | 1 cut(s) | 544 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 494, 1432 |
| BstAUI | TGTACA | 1 cut(s) | 239 |
| BstC8I | GCNNGC | 1 cut(s) | 1221 |
| BstDEI | CTNAG | 8 cut(s) | 170, 483, 804, 908, 1113, 1446, 1726, 1791 |
| BstDSI | CCRYGG | 1 cut(s) | 884 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 781 |
| BstF5I | GGATG | 5 cut(s) | 646, 850, 973, 1060, 1687 |
| BstFNI | CGCG | 1 cut(s) | 223 |
| BstKTI | GATC | 4 cut(s) | 953, 1139, 1175, 1839 |
| BstMAI | GTCTC | 4 cut(s) | 155, 1304, 1716, 1900 |
| BstMBI | GATC | 4 cut(s) | 950, 1136, 1172, 1836 |
| BstMCI | CGRYCG | 1 cut(s) | 1385 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 494, 889, 1432, 1568, 1787, 1796, 1802, 1808, 1811 |
| BstNI | CCWGG | 1 cut(s) | 1145 |
| BstNSI | RCATGY | 2 cut(s) | 1325, 1430 |
| BstSCI | CCNGG | 2 cut(s) | 1143, 1231 |
| BstSLI | GKGCMC | 1 cut(s) | 1776 |
| BstUI | CGCG | 1 cut(s) | 223 |
| BstX2I | RGATCY | 1 cut(s) | 950 |
| BstYI | RGATCY | 1 cut(s) | 950 |
| Bsu36I | CCTNAGG | 1 cut(s) | 483 |
| BsuI | GTATCC | 2 cut(s) | 1534, 1881 |
| BsuRI | GGCC | 1 cut(s) | 1571 |
| BtgI | CCRYGG | 1 cut(s) | 884 |
| BtsCI | GGATG | 5 cut(s) | 646, 850, 973, 1060, 1687 |
| BtsIMutI | CAGTG | 1 cut(s) | 796 |
| BveI | ACCTGC | 1 cut(s) | 1837 |
| Cac8I | GCNNGC | 1 cut(s) | 1221 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1352 |
| CseI | GACGC | 2 cut(s) | 212, 1917 |
| Csp6I | GTAC | 7 cut(s) | 35, 228, 240, 1496, 1598, 1616, 1850 |
| CviAII | CATG | 7 cut(s) | 475, 591, 1140, 1259, 1322, 1427, 1677 |
| CviQI | GTAC | 7 cut(s) | 35, 228, 240, 1496, 1598, 1616, 1850 |
| DdeI | CTNAG | 8 cut(s) | 170, 483, 804, 908, 1113, 1446, 1726, 1791 |
| DpnI | GATC | 4 cut(s) | 952, 1138, 1174, 1838 |
| DpnII | GATC | 4 cut(s) | 950, 1136, 1172, 1836 |
| DraI | TTTAAA | 1 cut(s) | 1579 |
| DraIII | CACNNNGTG | 1 cut(s) | 793 |
| EaeI | YGGCCR | 1 cut(s) | 1569 |
| Eam1104I | CTCTTC | 1 cut(s) | 1896 |
| EarI | CTCTTC | 1 cut(s) | 1896 |
| EciI | GGCGGA | 1 cut(s) | 977 |
| Eco24I | GRGCYC | 1 cut(s) | 1167 |
| Eco32I | GATATC | 1 cut(s) | 514 |
| Eco81I | CCTNAGG | 1 cut(s) | 483 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 781 |
| EcoRI | GAATTC | 2 cut(s) | 855, 1377 |
| EcoRII | CCWGG | 1 cut(s) | 1143 |
| EcoRV | GATATC | 1 cut(s) | 514 |
| EcoT22I | ATGCAT | 1 cut(s) | 1327 |
| EcoT38I | GRGCYC | 1 cut(s) | 1167 |
| Esp3I | CGTCTC | 1 cut(s) | 1900 |
| FaeI | CATG | 7 cut(s) | 478, 594, 1143, 1262, 1325, 1430, 1680 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 282, 314, 500, 532 |
| FatI | CATG | 7 cut(s) | 474, 590, 1139, 1258, 1321, 1426, 1676 |
| FauI | CCCGC | 1 cut(s) | 1406 |
| FblI | GTMKAC | 2 cut(s) | 303, 850 |
| FokI | GGATG | 5 cut(s) | 653, 857, 980, 1047, 1694 |
| FriOI | GRGCYC | 1 cut(s) | 1167 |
| FspBI | CTAG | 3 cut(s) | 425, 453, 1341 |
| GsuI | CTGGAG | 2 cut(s) | 1442, 1623 |
| HaeIII | GGCC | 1 cut(s) | 1571 |
| HapII | CCGG | 2 cut(s) | 979, 1232 |
| HgaI | GACGC | 2 cut(s) | 212, 1917 |
| Hin1II | CATG | 7 cut(s) | 478, 594, 1143, 1262, 1325, 1430, 1680 |
| HincII | GTYRAC | 4 cut(s) | 304, 472, 615, 1183 |
| HindII | GTYRAC | 4 cut(s) | 304, 472, 615, 1183 |
| HinfI | GANTC | 9 cut(s) | 130, 172, 329, 533, 551, 975, 1070, 1636, 1724 |
| HpaI | GTTAAC | 3 cut(s) | 472, 615, 1183 |
| HpaII | CCGG | 2 cut(s) | 979, 1232 |
| HphI | GGTGA | 3 cut(s) | 565, 958, 1166 |
| Hpy166II | GTNNAC | 7 cut(s) | 304, 472, 615, 851, 1107, 1183, 1774 |
| Hpy188I | TCNGA | 4 cut(s) | 118, 733, 807, 1729 |
| Hpy188III | TCNNGA | 2 cut(s) | 150, 290 |
| Hpy8I | GTNNAC | 7 cut(s) | 304, 472, 615, 851, 1107, 1183, 1774 |
| Hpy99I | CGWCG | 1 cut(s) | 228 |
| HpyAV | CCTTC | 4 cut(s) | 1009, 1290, 1486, 1760 |
| HpyCH4III | ACNGT | 4 cut(s) | 685, 791, 946, 1315 |
| HpyCH4IV | ACGT | 2 cut(s) | 663, 676 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 494, 889, 1432, 1568, 1787, 1796, 1802, 1808, 1811 |
| HpyF3I | CTNAG | 8 cut(s) | 170, 483, 804, 908, 1113, 1446, 1726, 1791 |
| HpySE526I | ACGT | 2 cut(s) | 663, 676 |
| Hsp92II | CATG | 7 cut(s) | 478, 594, 1143, 1262, 1325, 1430, 1680 |
| KpnI | GGTACC | 1 cut(s) | 38 |
| KspAI | GTTAAC | 3 cut(s) | 472, 615, 1183 |
| Kzo9I | GATC | 4 cut(s) | 950, 1136, 1172, 1836 |
| LmnI | GCTCC | 4 cut(s) | 889, 936, 1423, 1470 |
| LweI | GCATC | 2 cut(s) | 809, 1582 |
| MaeI | CTAG | 3 cut(s) | 425, 453, 1341 |
| MaeII | ACGT | 2 cut(s) | 663, 676 |
| MaeIII | GTNAC | 2 cut(s) | 690, 793 |
| MalI | GATC | 4 cut(s) | 952, 1138, 1174, 1838 |
| MboI | GATC | 4 cut(s) | 950, 1136, 1172, 1836 |
| MboII | GAAGA | 3 cut(s) | 508, 1309, 1913 |
| MfeI | CAATTG | 2 cut(s) | 93, 1695 |
| MflI | RGATCY | 1 cut(s) | 950 |
| MhlI | GDGCHC | 3 cut(s) | 933, 1167, 1776 |
| MluI | ACGCGT | 1 cut(s) | 221 |
| MlyI | GAGTC | 6 cut(s) | 181, 527, 560, 984, 1630, 1718 |
| MmeI | TCCRAC | 4 cut(s) | 158, 380, 397, 1518 |
| Mph1103I | ATGCAT | 1 cut(s) | 1327 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1561, 1857 |
| MspA1I | CMGCKG | 2 cut(s) | 1067, 1352 |
| MspCI | CTTAAG | 1 cut(s) | 544 |
| MspI | CCGG | 2 cut(s) | 979, 1232 |
| MspR9I | CCNGG | 2 cut(s) | 1145, 1233 |
| MunI | CAATTG | 2 cut(s) | 93, 1695 |
| Mva1269I | GAATGC | 1 cut(s) | 1276 |
| MvaI | CCWGG | 1 cut(s) | 1145 |
| MvnI | CGCG | 1 cut(s) | 223 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 494, 889, 1432, 1568, 1787, 1796, 1802, 1808, 1811 |
| NciI | CCSGG | 1 cut(s) | 1233 |
| NdeII | GATC | 4 cut(s) | 950, 1136, 1172, 1836 |
| NlaIII | CATG | 7 cut(s) | 478, 594, 1143, 1262, 1325, 1430, 1680 |
| NlaIV | GGNNCC | 1 cut(s) | 36 |
| NmuCI | GTSAC | 1 cut(s) | 793 |
| NsiI | ATGCAT | 1 cut(s) | 1327 |
| NspI | RCATGY | 2 cut(s) | 1325, 1430 |
| OliI | CACNNNNGTG | 1 cut(s) | 1561 |
| PctI | GAATGC | 1 cut(s) | 1276 |
| PfeI | GAWTC | 3 cut(s) | 130, 329, 1070 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1150, 1646 |
| PfoI | TCCNGGA | 1 cut(s) | 1231 |
| PleI | GAGTC | 6 cut(s) | 180, 527, 559, 983, 1630, 1718 |
| PpsI | GAGTC | 6 cut(s) | 180, 527, 559, 983, 1630, 1718 |
| PshBI | ATTAAT | 1 cut(s) | 71 |
| PsiI | TTATAA | 1 cut(s) | 393 |
| Psp6I | CCWGG | 1 cut(s) | 1143 |
| PspGI | CCWGG | 1 cut(s) | 1143 |
| PspN4I | GGNNCC | 1 cut(s) | 36 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1352 |
| PsuI | RGATCY | 1 cut(s) | 950 |
| PvuII | CAGCTG | 2 cut(s) | 1067, 1352 |
| RsaI | GTAC | 7 cut(s) | 36, 229, 241, 1497, 1599, 1617, 1851 |
| RsaNI | GTAC | 7 cut(s) | 35, 228, 240, 1496, 1598, 1616, 1850 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1561, 1857 |
| SalI | GTCGAC | 1 cut(s) | 302 |
| Sau3AI | GATC | 4 cut(s) | 950, 1136, 1172, 1836 |
| SchI | GAGTC | 6 cut(s) | 181, 527, 560, 984, 1630, 1718 |
| ScrFI | CCNGG | 2 cut(s) | 1145, 1233 |
| SduI | GDGCHC | 3 cut(s) | 933, 1167, 1776 |
| SfaNI | GCATC | 2 cut(s) | 809, 1582 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1561, 1857 |
| SmlI | CTYRAG | 4 cut(s) | 148, 544, 1749, 1882 |
| SmoI | CTYRAG | 4 cut(s) | 148, 544, 1749, 1882 |
| SsiI | CCGC | 7 cut(s) | 32, 962, 1025, 1121, 1413, 1601, 1745 |
| SspI | AATATT | 1 cut(s) | 439 |
| SspMI | CTAG | 3 cut(s) | 425, 453, 1341 |
| StyD4I | CCNGG | 2 cut(s) | 1143, 1231 |
| TaaI | ACNGT | 4 cut(s) | 685, 791, 946, 1315 |
| TaiI | ACGT | 2 cut(s) | 666, 679 |
| TaqI | TCGA | 5 cut(s) | 303, 327, 347, 989, 1899 |
| TaqII | GACCGA | 1 cut(s) | 1371 |
| TatI | WGTACW | 1 cut(s) | 239 |
| TauI | GCSGC | 1 cut(s) | 1748 |
| TfiI | GAWTC | 3 cut(s) | 130, 329, 1070 |
| TscAI | CASTG | 1 cut(s) | 796 |
| TseFI | GTSAC | 1 cut(s) | 793 |
| Tsp45I | GTSAC | 1 cut(s) | 793 |
| TspDTI | ATGAA | 7 cut(s) | 615, 753, 765, 1283, 1310, 1616, 1698 |
| TspGWI | ACGGA | 3 cut(s) | 142, 1359, 1524 |
| TspRI | CASTG | 1 cut(s) | 796 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1150, 1646 |
| Vha464I | CTTAAG | 1 cut(s) | 544 |
| VneI | GTGCAC | 1 cut(s) | 1772 |
| VspI | ATTAAT | 1 cut(s) | 71 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 781 |
| XapI | RAATTY | 8 cut(s) | 252, 293, 379, 855, 991, 1245, 1377, 1574 |
| XceI | RCATGY | 2 cut(s) | 1325, 1430 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1174, 1647 |
| XmiI | GTMKAC | 2 cut(s) | 303, 850 |
| XspI | CTAG | 3 cut(s) | 425, 453, 1341 |
| Zsp2I | ATGCAT | 1 cut(s) | 1327 |