Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 346 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 514 |
| Acc36I | ACCTGC | 1 cut(s) | 346 |
| AccB1I | GGYRCC | 2 cut(s) | 544, 659 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 691 |
| AccBSI | CCGCTC | 1 cut(s) | 421 |
| AccI | GTMKAC | 1 cut(s) | 82 |
| AciI | CCGC | 5 cut(s) | 62, 419, 548, 596, 657 |
| AclWI | GGATC | 1 cut(s) | 624 |
| AcoI | YGGCCR | 1 cut(s) | 619 |
| AcsI | RAATTY | 1 cut(s) | 172 |
| AcuI | CTGAAG | 1 cut(s) | 398 |
| AcyI | GRCGYC | 1 cut(s) | 545 |
| AfaI | GTAC | 2 cut(s) | 33, 617 |
| AfeI | AGCGCT | 1 cut(s) | 587 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 106, 691 |
| AgsI | TTSAA | 1 cut(s) | 125 |
| AjnI | CCWGG | 1 cut(s) | 475 |
| AluBI | AGCT | 3 cut(s) | 77, 392, 428 |
| AluI | AGCT | 3 cut(s) | 77, 392, 428 |
| Alw26I | GTCTC | 2 cut(s) | 326, 438 |
| AlwI | GGATC | 1 cut(s) | 624 |
| Aor51HI | AGCGCT | 1 cut(s) | 587 |
| AoxI | GGCC | 1 cut(s) | 619 |
| ApeKI | GCWGC | 5 cut(s) | 11, 149, 465, 468, 698 |
| ApoI | RAATTY | 1 cut(s) | 172 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 173 |
| AspLEI | GCGC | 2 cut(s) | 547, 588 |
| AsuHPI | GGTGA | 2 cut(s) | 89, 531 |
| AsuII | TTCGAA | 1 cut(s) | 238 |
| AsuNHI | GCTAGC | 1 cut(s) | 529 |
| BanI | GGYRCC | 2 cut(s) | 544, 659 |
| BbvI | GCAGC | 3 cut(s) | 136, 477, 480 |
| BccI | CCATC | 4 cut(s) | 146, 511, 568, 630 |
| BceAI | ACGGC | 2 cut(s) | 478, 634 |
| BciT130I | CCWGG | 1 cut(s) | 477 |
| BcoDI | GTCTC | 2 cut(s) | 326, 438 |
| BfaI | CTAG | 3 cut(s) | 21, 297, 530 |
| BfmI | CTRYAG | 1 cut(s) | 387 |
| BfoI | RGCGCY | 2 cut(s) | 548, 589 |
| BfuAI | ACCTGC | 1 cut(s) | 346 |
| BglII | AGATCT | 1 cut(s) | 665 |
| BisI | GCNGC | 7 cut(s) | 12, 150, 419, 466, 469, 548, 699 |
| BlsI | GCNGC | 7 cut(s) | 13, 151, 420, 467, 470, 549, 700 |
| Bme1390I | CCNGG | 1 cut(s) | 477 |
| BmiI | GGNNCC | 2 cut(s) | 546, 661 |
| BmrFI | CCNGG | 1 cut(s) | 477 |
| BmrI | ACTGGG | 1 cut(s) | 607 |
| BmtI | GCTAGC | 1 cut(s) | 533 |
| BmuI | ACTGGG | 1 cut(s) | 607 |
| Bpu14I | TTCGAA | 1 cut(s) | 238 |
| BsaHI | GRCGYC | 1 cut(s) | 545 |
| BsaJI | CCNNGG | 3 cut(s) | 100, 475, 690 |
| BsaWI | WCCGGW | 1 cut(s) | 511 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 106, 691 |
| Bse118I | RCCGGY | 1 cut(s) | 541 |
| Bse1I | ACTGG | 1 cut(s) | 613 |
| BseBI | CCWGG | 1 cut(s) | 477 |
| BseDI | CCNNGG | 3 cut(s) | 100, 475, 690 |
| BseGI | GGATG | 4 cut(s) | 138, 205, 358, 560 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 106, 691 |
| BseNI | ACTGG | 1 cut(s) | 613 |
| BseRI | GAGGAG | 1 cut(s) | 179 |
| BseXI | GCAGC | 3 cut(s) | 136, 477, 480 |
| BshFI | GGCC | 1 cut(s) | 621 |
| BshNI | GGYRCC | 2 cut(s) | 544, 659 |
| BsiSI | CCGG | 2 cut(s) | 512, 542 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 106, 691 |
| BsmAI | GTCTC | 2 cut(s) | 326, 438 |
| BsmBI | CGTCTC | 1 cut(s) | 438 |
| BsnI | GGCC | 1 cut(s) | 621 |
| Bsp119I | TTCGAA | 1 cut(s) | 238 |
| Bsp1407I | TGTACA | 1 cut(s) | 31 |
| Bsp143I | GATC | 2 cut(s) | 629, 665 |
| Bsp19I | CCATGG | 1 cut(s) | 690 |
| BspACI | CCGC | 5 cut(s) | 62, 419, 548, 596, 657 |
| BspANI | GGCC | 1 cut(s) | 621 |
| BspLI | GGNNCC | 2 cut(s) | 546, 661 |
| BspMI | ACCTGC | 1 cut(s) | 346 |
| BspOI | GCTAGC | 1 cut(s) | 533 |
| BspPI | GGATC | 1 cut(s) | 624 |
| BspT104I | TTCGAA | 1 cut(s) | 238 |
| BspT107I | GGYRCC | 2 cut(s) | 544, 659 |
| BsrBI | CCGCTC | 1 cut(s) | 421 |
| BsrFI | RCCGGY | 1 cut(s) | 541 |
| BsrGI | TGTACA | 1 cut(s) | 31 |
| BsrI | ACTGG | 1 cut(s) | 613 |
| BssAI | RCCGGY | 1 cut(s) | 541 |
| BssECI | CCNNGG | 3 cut(s) | 100, 475, 690 |
| BssMI | GATC | 2 cut(s) | 629, 665 |
| BssNI | GRCGYC | 1 cut(s) | 545 |
| BssT1I | CCWWGG | 2 cut(s) | 100, 690 |
| Bst2UI | CCWGG | 1 cut(s) | 477 |
| Bst4CI | ACNGT | 1 cut(s) | 257 |
| BstACI | GRCGYC | 1 cut(s) | 545 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 293 |
| BstAUI | TGTACA | 1 cut(s) | 31 |
| BstBI | TTCGAA | 1 cut(s) | 238 |
| BstC8I | GCNNGC | 3 cut(s) | 285, 531, 552 |
| BstDSI | CCRYGG | 1 cut(s) | 690 |
| BstF5I | GGATG | 4 cut(s) | 138, 205, 358, 560 |
| BstH2I | RGCGCY | 2 cut(s) | 548, 589 |
| BstHHI | GCGC | 2 cut(s) | 547, 588 |
| BstKTI | GATC | 2 cut(s) | 632, 668 |
| BstMAI | GTCTC | 2 cut(s) | 326, 438 |
| BstMBI | GATC | 2 cut(s) | 629, 665 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 17, 74, 293, 551, 695 |
| BstNI | CCWGG | 1 cut(s) | 477 |
| BstNSI | RCATGY | 1 cut(s) | 38 |
| BstSCI | CCNGG | 1 cut(s) | 475 |
| BstSFI | CTRYAG | 1 cut(s) | 387 |
| BstV1I | GCAGC | 3 cut(s) | 136, 477, 480 |
| BstX2I | RGATCY | 2 cut(s) | 629, 665 |
| BstYI | RGATCY | 2 cut(s) | 629, 665 |
| BsuRI | GGCC | 1 cut(s) | 621 |
| BtgI | CCRYGG | 1 cut(s) | 690 |
| BtsCI | GGATG | 4 cut(s) | 138, 205, 358, 560 |
| BveI | ACCTGC | 1 cut(s) | 346 |
| Cac8I | GCNNGC | 3 cut(s) | 285, 531, 552 |
| CfoI | GCGC | 2 cut(s) | 547, 588 |
| Cfr10I | RCCGGY | 1 cut(s) | 541 |
| CseI | GACGC | 1 cut(s) | 230 |
| Csp6I | GTAC | 2 cut(s) | 32, 616 |
| CviAII | CATG | 3 cut(s) | 35, 686, 691 |
| CviQI | GTAC | 2 cut(s) | 32, 616 |
| DinI | GGCGCC | 1 cut(s) | 546 |
| DpnI | GATC | 2 cut(s) | 631, 667 |
| DpnII | GATC | 2 cut(s) | 629, 665 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 514 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 514 |
| EaeI | YGGCCR | 1 cut(s) | 619 |
| Eco130I | CCWWGG | 2 cut(s) | 100, 690 |
| Eco47III | AGCGCT | 1 cut(s) | 587 |
| Eco57I | CTGAAG | 1 cut(s) | 398 |
| EcoRII | CCWGG | 1 cut(s) | 475 |
| EcoT14I | CCWWGG | 2 cut(s) | 100, 690 |
| EgeI | GGCGCC | 1 cut(s) | 546 |
| EheI | GGCGCC | 1 cut(s) | 546 |
| ErhI | CCWWGG | 2 cut(s) | 100, 690 |
| Esp3I | CGTCTC | 1 cut(s) | 438 |
| FaeI | CATG | 3 cut(s) | 38, 689, 694 |
| FatI | CATG | 3 cut(s) | 34, 685, 690 |
| FblI | GTMKAC | 1 cut(s) | 82 |
| Fnu4HI | GCNGC | 7 cut(s) | 12, 150, 419, 466, 469, 548, 699 |
| FokI | GGATG | 4 cut(s) | 125, 212, 365, 547 |
| Fsp4HI | GCNGC | 7 cut(s) | 12, 150, 419, 466, 469, 548, 699 |
| FspBI | CTAG | 3 cut(s) | 21, 297, 530 |
| GlaI | GCGC | 2 cut(s) | 546, 587 |
| GluI | GCNGC | 7 cut(s) | 12, 150, 419, 466, 469, 548, 699 |
| HaeII | RGCGCY | 2 cut(s) | 548, 589 |
| HaeIII | GGCC | 1 cut(s) | 621 |
| HapII | CCGG | 2 cut(s) | 512, 542 |
| HgaI | GACGC | 1 cut(s) | 230 |
| HhaI | GCGC | 2 cut(s) | 547, 588 |
| Hin1I | GRCGYC | 1 cut(s) | 545 |
| Hin1II | CATG | 3 cut(s) | 38, 689, 694 |
| Hin6I | GCGC | 2 cut(s) | 545, 586 |
| HinP1I | GCGC | 2 cut(s) | 545, 586 |
| HincII | GTYRAC | 1 cut(s) | 112 |
| HindII | GTYRAC | 1 cut(s) | 112 |
| HinfI | GANTC | 4 cut(s) | 131, 240, 486, 508 |
| HpaII | CCGG | 2 cut(s) | 512, 542 |
| HphI | GGTGA | 2 cut(s) | 89, 531 |
| Hpy166II | GTNNAC | 2 cut(s) | 83, 112 |
| Hpy188I | TCNGA | 3 cut(s) | 181, 245, 491 |
| Hpy188III | TCNNGA | 3 cut(s) | 142, 197, 573 |
| Hpy8I | GTNNAC | 2 cut(s) | 83, 112 |
| Hpy99I | CGWCG | 1 cut(s) | 410 |
| HpyAV | CCTTC | 2 cut(s) | 422, 643 |
| HpyCH4III | ACNGT | 1 cut(s) | 257 |
| HpyCH4V | TGCA | 4 cut(s) | 38, 275, 287, 593 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 17, 74, 293, 551, 695 |
| Hsp92I | GRCGYC | 1 cut(s) | 545 |
| Hsp92II | CATG | 3 cut(s) | 38, 689, 694 |
| HspAI | GCGC | 2 cut(s) | 545, 586 |
| KasI | GGCGCC | 1 cut(s) | 544 |
| Kzo9I | GATC | 2 cut(s) | 629, 665 |
| Lsp1109I | GCAGC | 3 cut(s) | 136, 477, 480 |
| MaeI | CTAG | 3 cut(s) | 21, 297, 530 |
| MalI | GATC | 2 cut(s) | 631, 667 |
| MbiI | CCGCTC | 1 cut(s) | 421 |
| MboI | GATC | 2 cut(s) | 629, 665 |
| MboII | GAAGA | 1 cut(s) | 181 |
| MflI | RGATCY | 2 cut(s) | 629, 665 |
| MluCI | AATT | 1 cut(s) | 172 |
| Mly113I | GGCGCC | 1 cut(s) | 545 |
| MlyI | GAGTC | 2 cut(s) | 125, 502 |
| MmeI | TCCRAC | 1 cut(s) | 268 |
| MnlI | CCTC | 6 cut(s) | 58, 157, 175, 358, 482, 643 |
| MroXI | GAANNNNTTC | 1 cut(s) | 173 |
| MseI | TTAA | 2 cut(s) | 156, 482 |
| MspI | CCGG | 2 cut(s) | 512, 542 |
| MspR9I | CCNGG | 1 cut(s) | 477 |
| MvaI | CCWGG | 1 cut(s) | 477 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 17, 74, 293, 551, 695 |
| NarI | GGCGCC | 1 cut(s) | 545 |
| NcoI | CCATGG | 1 cut(s) | 690 |
| NdeII | GATC | 2 cut(s) | 629, 665 |
| NheI | GCTAGC | 1 cut(s) | 529 |
| NlaIII | CATG | 3 cut(s) | 38, 689, 694 |
| NlaIV | GGNNCC | 2 cut(s) | 546, 661 |
| NspI | RCATGY | 1 cut(s) | 38 |
| NspV | TTCGAA | 1 cut(s) | 238 |
| PaqCI | CACCTGC | 1 cut(s) | 346 |
| PdmI | GAANNNNTTC | 1 cut(s) | 173 |
| PfeI | GAWTC | 2 cut(s) | 240, 486 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 691 |
| PkrI | GCNGC | 7 cut(s) | 13, 151, 420, 467, 470, 549, 700 |
| PleI | GAGTC | 2 cut(s) | 125, 502 |
| PluTI | GGCGCC | 1 cut(s) | 548 |
| PpsI | GAGTC | 2 cut(s) | 125, 502 |
| Psp6I | CCWGG | 1 cut(s) | 475 |
| PspGI | CCWGG | 1 cut(s) | 475 |
| PspN4I | GGNNCC | 2 cut(s) | 546, 661 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 177, 209 |
| PsuI | RGATCY | 2 cut(s) | 629, 665 |
| RsaI | GTAC | 2 cut(s) | 33, 617 |
| RsaNI | GTAC | 2 cut(s) | 32, 616 |
| SaqAI | TTAA | 2 cut(s) | 156, 482 |
| SatI | GCNGC | 7 cut(s) | 12, 150, 419, 466, 469, 548, 699 |
| Sau3AI | GATC | 2 cut(s) | 629, 665 |
| SchI | GAGTC | 2 cut(s) | 125, 502 |
| ScrFI | CCNGG | 1 cut(s) | 477 |
| SetI | ASST | 8 cut(s) | 28, 79, 106, 186, 340, 394, 430, 654 |
| SfcI | CTRYAG | 1 cut(s) | 387 |
| SfoI | GGCGCC | 1 cut(s) | 546 |
| SfuI | TTCGAA | 1 cut(s) | 238 |
| SgrAI | CRCCGGYG | 1 cut(s) | 541 |
| Sse9I | AATT | 1 cut(s) | 172 |
| SsiI | CCGC | 5 cut(s) | 62, 419, 548, 596, 657 |
| SspDI | GGCGCC | 1 cut(s) | 544 |
| SspI | AATATT | 1 cut(s) | 215 |
| SspMI | CTAG | 3 cut(s) | 21, 297, 530 |
| StyD4I | CCNGG | 1 cut(s) | 475 |
| StyI | CCWWGG | 2 cut(s) | 100, 690 |
| TaaI | ACNGT | 1 cut(s) | 257 |
| TaqI | TCGA | 2 cut(s) | 238, 506 |
| TasI | AATT | 1 cut(s) | 172 |
| TatI | WGTACW | 1 cut(s) | 31 |
| TauI | GCSGC | 2 cut(s) | 421, 550 |
| TfiI | GAWTC | 2 cut(s) | 240, 486 |
| Tru1I | TTAA | 2 cut(s) | 156, 482 |
| Tru9I | TTAA | 2 cut(s) | 156, 482 |
| TseI | GCWGC | 5 cut(s) | 11, 149, 465, 468, 698 |
| TspGWI | ACGGA | 1 cut(s) | 298 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 691 |
| XapI | RAATTY | 1 cut(s) | 172 |
| XceI | RCATGY | 1 cut(s) | 38 |
| XmiI | GTMKAC | 1 cut(s) | 82 |
| XmnI | GAANNNNTTC | 1 cut(s) | 173 |
| XspI | CTAG | 3 cut(s) | 21, 297, 530 |