Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 35, 254 |
| AcoI | YGGCCR | 2 cut(s) | 209, 604 |
| AcsI | RAATTY | 2 cut(s) | 197, 353 |
| AcvI | CACGTG | 1 cut(s) | 466 |
| AflIII | ACRYGT | 1 cut(s) | 463 |
| AgsI | TTSAA | 3 cut(s) | 7, 476, 509 |
| AleI | CACNNNNGTG | 1 cut(s) | 227 |
| AluBI | AGCT | 1 cut(s) | 157 |
| AluI | AGCT | 1 cut(s) | 157 |
| AoxI | GGCC | 3 cut(s) | 209, 517, 604 |
| ApeKI | GCWGC | 2 cut(s) | 241, 419 |
| ApoI | RAATTY | 2 cut(s) | 197, 353 |
| AspS9I | GGNCC | 1 cut(s) | 517 |
| AsuHPI | GGTGA | 1 cut(s) | 505 |
| BbrPI | CACGTG | 1 cut(s) | 466 |
| BbvI | GCAGC | 2 cut(s) | 253, 431 |
| BccI | CCATC | 1 cut(s) | 484 |
| BfaI | CTAG | 2 cut(s) | 561, 641 |
| BfmI | CTRYAG | 1 cut(s) | 363 |
| BisI | GCNGC | 3 cut(s) | 242, 254, 420 |
| BlsI | GCNGC | 3 cut(s) | 243, 255, 421 |
| BmgT120I | GGNCC | 1 cut(s) | 517 |
| BmrI | ACTGGG | 1 cut(s) | 246 |
| BmsI | GCATC | 1 cut(s) | 472 |
| BmuI | ACTGGG | 1 cut(s) | 246 |
| BpmI | CTGGAG | 1 cut(s) | 173 |
| BsaAI | YACGTR | 1 cut(s) | 466 |
| BsaBI | GATNNNNATC | 1 cut(s) | 531 |
| BsaJI | CCNNGG | 2 cut(s) | 212, 245 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 312, 342 |
| Bse1I | ACTGG | 1 cut(s) | 241 |
| Bse3DI | GCAATG | 2 cut(s) | 135, 378 |
| Bse8I | GATNNNNATC | 1 cut(s) | 531 |
| BseDI | CCNNGG | 2 cut(s) | 212, 245 |
| BseGI | GGATG | 3 cut(s) | 19, 304, 487 |
| BseJI | GATNNNNATC | 1 cut(s) | 531 |
| BseMI | GCAATG | 2 cut(s) | 135, 378 |
| BseMII | CTCAG | 1 cut(s) | 599 |
| BseNI | ACTGG | 1 cut(s) | 241 |
| BseRI | GAGGAG | 2 cut(s) | 76, 333 |
| BseXI | GCAGC | 2 cut(s) | 253, 431 |
| BshFI | GGCC | 3 cut(s) | 211, 519, 606 |
| BsmI | GAATGC | 1 cut(s) | 37 |
| BsnI | GGCC | 3 cut(s) | 211, 519, 606 |
| Bsp19I | CCATGG | 1 cut(s) | 245 |
| BspACI | CCGC | 2 cut(s) | 35, 254 |
| BspANI | GGCC | 3 cut(s) | 211, 519, 606 |
| BspCNI | CTCAG | 1 cut(s) | 598 |
| BsrDI | GCAATG | 2 cut(s) | 135, 378 |
| BsrI | ACTGG | 1 cut(s) | 241 |
| BssECI | CCNNGG | 2 cut(s) | 212, 245 |
| BssT1I | CCWWGG | 1 cut(s) | 245 |
| Bst4CI | ACNGT | 3 cut(s) | 84, 173, 306 |
| BstBAI | YACGTR | 1 cut(s) | 466 |
| BstDEI | CTNAG | 1 cut(s) | 585 |
| BstDSI | CCRYGG | 1 cut(s) | 245 |
| BstEII | GGTNACC | 1 cut(s) | 493 |
| BstF5I | GGATG | 3 cut(s) | 19, 304, 487 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 187, 250, 368, 428 |
| BstPI | GGTNACC | 1 cut(s) | 493 |
| BstSFI | CTRYAG | 1 cut(s) | 363 |
| BstV1I | GCAGC | 2 cut(s) | 253, 431 |
| BsuRI | GGCC | 3 cut(s) | 211, 519, 606 |
| BtgI | CCRYGG | 1 cut(s) | 245 |
| BtsCI | GGATG | 3 cut(s) | 19, 304, 487 |
| BtsIMutI | CAGTG | 3 cut(s) | 169, 234, 593 |
| Cfr13I | GGNCC | 1 cut(s) | 517 |
| CseI | GACGC | 1 cut(s) | 618 |
| CviAII | CATG | 6 cut(s) | 186, 194, 246, 294, 358, 512 |
| CviJI | RGCY | 9 cut(s) | 149, 157, 190, 211, 244, 253, 362, 519, 606 |
| CviKI_1 | RGCY | 9 cut(s) | 149, 157, 190, 211, 244, 253, 362, 519, 606 |
| DdeI | CTNAG | 1 cut(s) | 585 |
| DraI | TTTAAA | 1 cut(s) | 573 |
| EaeI | YGGCCR | 2 cut(s) | 209, 604 |
| Eco130I | CCWWGG | 1 cut(s) | 245 |
| Eco32I | GATATC | 1 cut(s) | 19 |
| Eco72I | CACGTG | 1 cut(s) | 466 |
| Eco91I | GGTNACC | 1 cut(s) | 493 |
| EcoO109I | RGGNCCY | 1 cut(s) | 517 |
| EcoO65I | GGTNACC | 1 cut(s) | 493 |
| EcoRI | GAATTC | 2 cut(s) | 197, 353 |
| EcoRV | GATATC | 1 cut(s) | 19 |
| EcoT14I | CCWWGG | 1 cut(s) | 245 |
| ErhI | CCWWGG | 1 cut(s) | 245 |
| FaeI | CATG | 6 cut(s) | 189, 197, 249, 297, 361, 515 |
| FatI | CATG | 6 cut(s) | 185, 193, 245, 293, 357, 511 |
| Fnu4HI | GCNGC | 3 cut(s) | 242, 254, 420 |
| FokI | GGATG | 3 cut(s) | 26, 311, 494 |
| Fsp4HI | GCNGC | 3 cut(s) | 242, 254, 420 |
| FspBI | CTAG | 2 cut(s) | 561, 641 |
| GluI | GCNGC | 3 cut(s) | 242, 254, 420 |
| GsuI | CTGGAG | 1 cut(s) | 173 |
| HaeIII | GGCC | 3 cut(s) | 211, 519, 606 |
| HgaI | GACGC | 1 cut(s) | 618 |
| Hin1II | CATG | 6 cut(s) | 189, 197, 249, 297, 361, 515 |
| HinfI | GANTC | 2 cut(s) | 38, 527 |
| HphI | GGTGA | 1 cut(s) | 505 |
| Hpy166II | GTNNAC | 2 cut(s) | 54, 100 |
| Hpy188I | TCNGA | 1 cut(s) | 489 |
| Hpy188III | TCNNGA | 1 cut(s) | 152 |
| Hpy8I | GTNNAC | 2 cut(s) | 54, 100 |
| Hpy99I | CGWCG | 2 cut(s) | 612, 619 |
| HpyAV | CCTTC | 1 cut(s) | 470 |
| HpyCH4III | ACNGT | 3 cut(s) | 84, 173, 306 |
| HpyCH4IV | ACGT | 2 cut(s) | 121, 465 |
| HpyCH4V | TGCA | 6 cut(s) | 68, 128, 169, 181, 554, 591 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 187, 250, 368, 428 |
| HpyF3I | CTNAG | 1 cut(s) | 585 |
| HpySE526I | ACGT | 2 cut(s) | 121, 465 |
| Hsp92II | CATG | 6 cut(s) | 189, 197, 249, 297, 361, 515 |
| LmnI | GCTCC | 1 cut(s) | 154 |
| LpnPI | CCDG | 4 cut(s) | 137, 222, 270, 464 |
| Lsp1109I | GCAGC | 2 cut(s) | 253, 431 |
| LweI | GCATC | 1 cut(s) | 472 |
| MaeI | CTAG | 2 cut(s) | 561, 641 |
| MaeII | ACGT | 2 cut(s) | 121, 465 |
| MaeIII | GTNAC | 3 cut(s) | 232, 493, 595 |
| MboII | GAAGA | 1 cut(s) | 229 |
| MluCI | AATT | 4 cut(s) | 176, 197, 280, 353 |
| MlyI | GAGTC | 1 cut(s) | 47 |
| MnlI | CCTC | 5 cut(s) | 54, 207, 311, 376, 508 |
| MseI | TTAA | 3 cut(s) | 23, 273, 572 |
| MslI | CAYNNNNRTG | 1 cut(s) | 227 |
| Mva1269I | GAATGC | 1 cut(s) | 37 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 187, 250, 368, 428 |
| NcoI | CCATGG | 1 cut(s) | 245 |
| NlaIII | CATG | 6 cut(s) | 189, 197, 249, 297, 361, 515 |
| NmeAIII | GCCGAG | 1 cut(s) | 237 |
| NmuCI | GTSAC | 2 cut(s) | 232, 493 |
| OliI | CACNNNNGTG | 1 cut(s) | 227 |
| PctI | GAATGC | 1 cut(s) | 37 |
| PfeI | GAWTC | 1 cut(s) | 527 |
| PkrI | GCNGC | 3 cut(s) | 243, 255, 421 |
| PleI | GAGTC | 1 cut(s) | 46 |
| PmaCI | CACGTG | 1 cut(s) | 466 |
| PmlI | CACGTG | 1 cut(s) | 466 |
| PpsI | GAGTC | 1 cut(s) | 46 |
| Ppu21I | YACGTR | 1 cut(s) | 466 |
| PspCI | CACGTG | 1 cut(s) | 466 |
| PspEI | GGTNACC | 1 cut(s) | 493 |
| PspPI | GGNCC | 1 cut(s) | 517 |
| RseI | CAYNNNNRTG | 1 cut(s) | 227 |
| SaqAI | TTAA | 3 cut(s) | 23, 273, 572 |
| SatI | GCNGC | 3 cut(s) | 242, 254, 420 |
| Sau96I | GGNCC | 1 cut(s) | 517 |
| SchI | GAGTC | 1 cut(s) | 47 |
| SetI | ASST | 8 cut(s) | 115, 124, 159, 227, 468, 597, 627, 638 |
| SfaNI | GCATC | 1 cut(s) | 472 |
| SfcI | CTRYAG | 1 cut(s) | 363 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 227 |
| Sse9I | AATT | 4 cut(s) | 176, 197, 280, 353 |
| SsiI | CCGC | 2 cut(s) | 35, 254 |
| SspMI | CTAG | 2 cut(s) | 561, 641 |
| StyI | CCWWGG | 1 cut(s) | 245 |
| TaaI | ACNGT | 3 cut(s) | 84, 173, 306 |
| TaiI | ACGT | 2 cut(s) | 124, 468 |
| TaqI | TCGA | 1 cut(s) | 614 |
| TasI | AATT | 4 cut(s) | 176, 197, 280, 353 |
| TauI | GCSGC | 1 cut(s) | 256 |
| TfiI | GAWTC | 1 cut(s) | 527 |
| Tru1I | TTAA | 3 cut(s) | 23, 273, 572 |
| Tru9I | TTAA | 3 cut(s) | 23, 273, 572 |
| TscAI | CASTG | 3 cut(s) | 176, 241, 593 |
| TseFI | GTSAC | 2 cut(s) | 232, 493 |
| TseI | GCWGC | 2 cut(s) | 241, 419 |
| Tsp45I | GTSAC | 2 cut(s) | 232, 493 |
| TspDTI | ATGAA | 6 cut(s) | 123, 132, 210, 315, 346, 519 |
| TspGWI | ACGGA | 2 cut(s) | 26, 352 |
| TspRI | CASTG | 3 cut(s) | 176, 241, 593 |
| XapI | RAATTY | 2 cut(s) | 197, 353 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 264 |
| XspI | CTAG | 2 cut(s) | 561, 641 |