Pentatricopeptide repeat-containing protein At5g64320
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SAD_SRA | PF02182 | 249 - 403 | 1.6e-48 | SAD/SRA domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 507 |
| AciI | CCGC | 1 cut(s) | 541 |
| AclWI | GGATC | 2 cut(s) | 694, 1069 |
| AcoI | YGGCCR | 2 cut(s) | 244, 940 |
| AcsI | RAATTY | 3 cut(s) | 147, 239, 329 |
| AfaI | GTAC | 3 cut(s) | 390, 415, 499 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 209 |
| AflIII | ACRYGT | 1 cut(s) | 739 |
| AgsI | TTSAA | 9 cut(s) | 127, 335, 422, 537, 767, 785, 830, 1022, 1183 |
| AjnI | CCWGG | 4 cut(s) | 233, 757, 942, 972 |
| AluBI | AGCT | 5 cut(s) | 185, 622, 842, 1018, 1174 |
| AluI | AGCT | 5 cut(s) | 185, 622, 842, 1018, 1174 |
| Alw26I | GTCTC | 2 cut(s) | 73, 372 |
| AlwI | GGATC | 2 cut(s) | 694, 1069 |
| AoxI | GGCC | 7 cut(s) | 231, 244, 811, 940, 970, 1000, 1160 |
| ApaI | GGGCCC | 1 cut(s) | 1004 |
| ApeKI | GCWGC | 1 cut(s) | 401 |
| ApoI | RAATTY | 3 cut(s) | 147, 239, 329 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 186 |
| AspS9I | GGNCC | 6 cut(s) | 101, 865, 970, 1000, 1001, 1160 |
| AsuHPI | GGTGA | 2 cut(s) | 785, 812 |
| AvaII | GGWCC | 2 cut(s) | 101, 865 |
| AxyI | CCTNAGG | 1 cut(s) | 228 |
| BaeGI | GKGCMC | 2 cut(s) | 512, 1004 |
| BalI | TGGCCA | 2 cut(s) | 246, 942 |
| BanI | GGYRCC | 1 cut(s) | 507 |
| BanII | GRGCYC | 1 cut(s) | 1004 |
| BbsI | GAAGAC | 1 cut(s) | 302 |
| BbvI | GCAGC | 1 cut(s) | 388 |
| BccI | CCATC | 3 cut(s) | 497, 1091, 1115 |
| BciT130I | CCWGG | 4 cut(s) | 235, 759, 944, 974 |
| BcoDI | GTCTC | 2 cut(s) | 73, 372 |
| BisI | GCNGC | 2 cut(s) | 402, 541 |
| BlsI | GCNGC | 2 cut(s) | 403, 542 |
| Bme1390I | CCNGG | 4 cut(s) | 235, 759, 944, 974 |
| Bme18I | GGWCC | 2 cut(s) | 101, 865 |
| BmgT120I | GGNCC | 6 cut(s) | 101, 865, 970, 1000, 1001, 1160 |
| BmiI | GGNNCC | 3 cut(s) | 509, 1002, 1084 |
| BmrFI | CCNGG | 4 cut(s) | 235, 759, 944, 974 |
| BmsI | GCATC | 1 cut(s) | 896 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1112 |
| BpiI | GAAGAC | 1 cut(s) | 302 |
| BpmI | CTGGAG | 1 cut(s) | 650 |
| BpuEI | CTTGAG | 3 cut(s) | 136, 689, 990 |
| BsaJI | CCNNGG | 4 cut(s) | 757, 943, 973, 1078 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 209 |
| Bse1I | ACTGG | 4 cut(s) | 392, 876, 943, 1216 |
| Bse21I | CCTNAGG | 1 cut(s) | 228 |
| BseBI | CCWGG | 4 cut(s) | 235, 759, 944, 974 |
| BseDI | CCNNGG | 4 cut(s) | 757, 943, 973, 1078 |
| BseGI | GGATG | 2 cut(s) | 508, 1102 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 209 |
| BseMII | CTCAG | 3 cut(s) | 219, 336, 558 |
| BseNI | ACTGG | 4 cut(s) | 392, 876, 943, 1216 |
| BseRI | GAGGAG | 1 cut(s) | 672 |
| BseSI | GKGCMC | 2 cut(s) | 512, 1004 |
| BseXI | GCAGC | 1 cut(s) | 388 |
| BshFI | GGCC | 7 cut(s) | 233, 246, 813, 942, 972, 1002, 1162 |
| BshNI | GGYRCC | 1 cut(s) | 507 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 209 |
| BsmAI | GTCTC | 2 cut(s) | 73, 372 |
| BsmI | GAATGC | 1 cut(s) | 133 |
| BsnI | GGCC | 7 cut(s) | 233, 246, 813, 942, 972, 1002, 1162 |
| Bsp120I | GGGCCC | 1 cut(s) | 1000 |
| Bsp1286I | GDGCHC | 2 cut(s) | 512, 1004 |
| Bsp143I | GATC | 5 cut(s) | 647, 699, 930, 1009, 1074 |
| BspACI | CCGC | 1 cut(s) | 541 |
| BspANI | GGCC | 7 cut(s) | 233, 246, 813, 942, 972, 1002, 1162 |
| BspCNI | CTCAG | 3 cut(s) | 220, 337, 559 |
| BspHI | TCATGA | 1 cut(s) | 550 |
| BspLI | GGNNCC | 3 cut(s) | 509, 1002, 1084 |
| BspPI | GGATC | 2 cut(s) | 694, 1069 |
| BspT107I | GGYRCC | 1 cut(s) | 507 |
| BsrI | ACTGG | 4 cut(s) | 392, 876, 943, 1216 |
| BssECI | CCNNGG | 4 cut(s) | 757, 943, 973, 1078 |
| BssMI | GATC | 5 cut(s) | 647, 699, 930, 1009, 1074 |
| Bst2UI | CCWGG | 4 cut(s) | 235, 759, 944, 974 |
| Bst4CI | ACNGT | 1 cut(s) | 292 |
| BstDEI | CTNAG | 3 cut(s) | 228, 345, 567 |
| BstDSI | CCRYGG | 1 cut(s) | 1078 |
| BstF5I | GGATG | 2 cut(s) | 508, 1102 |
| BstKTI | GATC | 5 cut(s) | 650, 702, 933, 1012, 1077 |
| BstMAI | GTCTC | 2 cut(s) | 73, 372 |
| BstMBI | GATC | 5 cut(s) | 647, 699, 930, 1009, 1074 |
| BstNI | CCWGG | 4 cut(s) | 235, 759, 944, 974 |
| BstNSI | RCATGY | 1 cut(s) | 743 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1112 |
| BstSCI | CCNGG | 4 cut(s) | 233, 757, 942, 972 |
| BstSLI | GKGCMC | 2 cut(s) | 512, 1004 |
| BstV1I | GCAGC | 1 cut(s) | 388 |
| BstV2I | GAAGAC | 1 cut(s) | 302 |
| BstX2I | RGATCY | 1 cut(s) | 699 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 492 |
| BstYI | RGATCY | 1 cut(s) | 699 |
| Bsu36I | CCTNAGG | 1 cut(s) | 228 |
| BsuRI | GGCC | 7 cut(s) | 233, 246, 813, 942, 972, 1002, 1162 |
| BtgI | CCRYGG | 1 cut(s) | 1078 |
| BtsCI | GGATG | 2 cut(s) | 508, 1102 |
| BtsIMutI | CAGTG | 3 cut(s) | 297, 342, 1209 |
| CciI | TCATGA | 1 cut(s) | 550 |
| Cfr13I | GGNCC | 6 cut(s) | 101, 865, 970, 1000, 1001, 1160 |
| Csp6I | GTAC | 3 cut(s) | 389, 414, 498 |
| CviAII | CATG | 7 cut(s) | 10, 386, 455, 476, 492, 551, 740 |
| CviQI | GTAC | 3 cut(s) | 389, 414, 498 |
| DdeI | CTNAG | 3 cut(s) | 228, 345, 567 |
| DpnI | GATC | 5 cut(s) | 649, 701, 932, 1011, 1076 |
| DpnII | GATC | 5 cut(s) | 647, 699, 930, 1009, 1074 |
| DraI | TTTAAA | 1 cut(s) | 1041 |
| EaeI | YGGCCR | 2 cut(s) | 244, 940 |
| Eco24I | GRGCYC | 1 cut(s) | 1004 |
| Eco32I | GATATC | 1 cut(s) | 754 |
| Eco47I | GGWCC | 2 cut(s) | 101, 865 |
| Eco81I | CCTNAGG | 1 cut(s) | 228 |
| EcoO109I | RGGNCCY | 4 cut(s) | 865, 1000, 1001, 1160 |
| EcoRII | CCWGG | 4 cut(s) | 233, 757, 942, 972 |
| EcoRV | GATATC | 1 cut(s) | 754 |
| EcoT38I | GRGCYC | 1 cut(s) | 1004 |
| FaeI | CATG | 7 cut(s) | 13, 389, 458, 479, 495, 554, 743 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 388, 420 |
| FatI | CATG | 7 cut(s) | 9, 385, 454, 475, 491, 550, 739 |
| FauNDI | CATATG | 2 cut(s) | 597, 1111 |
| Fnu4HI | GCNGC | 2 cut(s) | 402, 541 |
| FokI | GGATG | 2 cut(s) | 515, 1109 |
| FriOI | GRGCYC | 1 cut(s) | 1004 |
| Fsp4HI | GCNGC | 2 cut(s) | 402, 541 |
| GluI | GCNGC | 2 cut(s) | 402, 541 |
| GsuI | CTGGAG | 1 cut(s) | 650 |
| HaeIII | GGCC | 7 cut(s) | 233, 246, 813, 942, 972, 1002, 1162 |
| Hin1II | CATG | 7 cut(s) | 13, 389, 458, 479, 495, 554, 743 |
| HindIII | AAGCTT | 2 cut(s) | 1016, 1172 |
| HinfI | GANTC | 6 cut(s) | 66, 379, 481, 717, 826, 923 |
| HphI | GGTGA | 2 cut(s) | 785, 812 |
| Hpy166II | GTNNAC | 1 cut(s) | 101 |
| Hpy188I | TCNGA | 6 cut(s) | 154, 674, 1014, 1070, 1087, 1191 |
| Hpy188III | TCNNGA | 5 cut(s) | 80, 191, 227, 551, 1007 |
| Hpy8I | GTNNAC | 1 cut(s) | 101 |
| HpyAV | CCTTC | 2 cut(s) | 433, 669 |
| HpyCH4III | ACNGT | 1 cut(s) | 292 |
| HpyCH4V | TGCA | 8 cut(s) | 595, 872, 887, 902, 913, 956, 986, 1054 |
| HpyF3I | CTNAG | 3 cut(s) | 228, 345, 567 |
| Hsp92II | CATG | 7 cut(s) | 13, 389, 458, 479, 495, 554, 743 |
| Kzo9I | GATC | 5 cut(s) | 647, 699, 930, 1009, 1074 |
| LmnI | GCTCC | 1 cut(s) | 1088 |
| Lsp1109I | GCAGC | 1 cut(s) | 388 |
| LweI | GCATC | 1 cut(s) | 896 |
| MalI | GATC | 5 cut(s) | 649, 701, 932, 1011, 1076 |
| MboI | GATC | 5 cut(s) | 647, 699, 930, 1009, 1074 |
| MboII | GAAGA | 6 cut(s) | 158, 307, 361, 388, 448, 647 |
| MflI | RGATCY | 1 cut(s) | 699 |
| MhlI | GDGCHC | 2 cut(s) | 512, 1004 |
| MlsI | TGGCCA | 2 cut(s) | 246, 942 |
| MluCI | AATT | 8 cut(s) | 121, 147, 239, 329, 354, 417, 768, 1200 |
| MluNI | TGGCCA | 2 cut(s) | 246, 942 |
| MlyI | GAGTC | 1 cut(s) | 75 |
| Mox20I | TGGCCA | 2 cut(s) | 246, 942 |
| MroXI | GAANNNNTTC | 1 cut(s) | 186 |
| MscI | TGGCCA | 2 cut(s) | 246, 942 |
| MseI | TTAA | 2 cut(s) | 696, 1040 |
| MslI | CAYNNNNRTG | 2 cut(s) | 474, 555 |
| Msp20I | TGGCCA | 2 cut(s) | 246, 942 |
| MspR9I | CCNGG | 4 cut(s) | 235, 759, 944, 974 |
| Mva1269I | GAATGC | 1 cut(s) | 133 |
| MvaI | CCWGG | 4 cut(s) | 235, 759, 944, 974 |
| NdeI | CATATG | 2 cut(s) | 597, 1111 |
| NdeII | GATC | 5 cut(s) | 647, 699, 930, 1009, 1074 |
| NlaIII | CATG | 7 cut(s) | 13, 389, 458, 479, 495, 554, 743 |
| NlaIV | GGNNCC | 3 cut(s) | 509, 1002, 1084 |
| NspI | RCATGY | 1 cut(s) | 743 |
| PagI | TCATGA | 1 cut(s) | 550 |
| PciI | ACATGT | 1 cut(s) | 739 |
| PctI | GAATGC | 1 cut(s) | 133 |
| PdmI | GAANNNNTTC | 1 cut(s) | 186 |
| PfeI | GAWTC | 5 cut(s) | 379, 481, 717, 826, 923 |
| PkrI | GCNGC | 2 cut(s) | 403, 542 |
| PleI | GAGTC | 1 cut(s) | 74 |
| PpsI | GAGTC | 1 cut(s) | 74 |
| PpuMI | RGGWCCY | 1 cut(s) | 865 |
| PscI | ACATGT | 1 cut(s) | 739 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1112 |
| Psp5II | RGGWCCY | 1 cut(s) | 865 |
| Psp6I | CCWGG | 4 cut(s) | 233, 757, 942, 972 |
| PspGI | CCWGG | 4 cut(s) | 233, 757, 942, 972 |
| PspN4I | GGNNCC | 3 cut(s) | 509, 1002, 1084 |
| PspOMI | GGGCCC | 1 cut(s) | 1000 |
| PspPI | GGNCC | 6 cut(s) | 101, 865, 970, 1000, 1001, 1160 |
| PspPPI | RGGWCCY | 1 cut(s) | 865 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 171, 203 |
| PsuI | RGATCY | 1 cut(s) | 699 |
| RsaI | GTAC | 3 cut(s) | 390, 415, 499 |
| RsaNI | GTAC | 3 cut(s) | 389, 414, 498 |
| RseI | CAYNNNNRTG | 2 cut(s) | 474, 555 |
| SaqAI | TTAA | 2 cut(s) | 696, 1040 |
| SatI | GCNGC | 2 cut(s) | 402, 541 |
| Sau3AI | GATC | 5 cut(s) | 647, 699, 930, 1009, 1074 |
| Sau96I | GGNCC | 6 cut(s) | 101, 865, 970, 1000, 1001, 1160 |
| SchI | GAGTC | 1 cut(s) | 75 |
| ScrFI | CCNGG | 4 cut(s) | 235, 759, 944, 974 |
| SduI | GDGCHC | 2 cut(s) | 512, 1004 |
| SfaNI | GCATC | 1 cut(s) | 896 |
| SinI | GGWCC | 2 cut(s) | 101, 865 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 474, 555 |
| SmlI | CTYRAG | 3 cut(s) | 115, 704, 1005 |
| SmoI | CTYRAG | 3 cut(s) | 115, 704, 1005 |
| Sse9I | AATT | 8 cut(s) | 121, 147, 239, 329, 354, 417, 768, 1200 |
| SsiI | CCGC | 1 cut(s) | 541 |
| SspI | AATATT | 1 cut(s) | 1145 |
| StyD4I | CCNGG | 4 cut(s) | 233, 757, 942, 972 |
| TaaI | ACNGT | 1 cut(s) | 292 |
| TasI | AATT | 8 cut(s) | 121, 147, 239, 329, 354, 417, 768, 1200 |
| TauI | GCSGC | 1 cut(s) | 543 |
| TfiI | GAWTC | 5 cut(s) | 379, 481, 717, 826, 923 |
| Tru1I | TTAA | 2 cut(s) | 696, 1040 |
| Tru9I | TTAA | 2 cut(s) | 696, 1040 |
| TscAI | CASTG | 3 cut(s) | 297, 349, 1216 |
| TseI | GCWGC | 1 cut(s) | 401 |
| TspDTI | ATGAA | 3 cut(s) | 474, 624, 1208 |
| TspGWI | ACGGA | 3 cut(s) | 155, 515, 1067 |
| TspRI | CASTG | 3 cut(s) | 297, 349, 1216 |
| VpaK11BI | GGWCC | 2 cut(s) | 101, 865 |
| XapI | RAATTY | 3 cut(s) | 147, 239, 329 |
| XceI | RCATGY | 1 cut(s) | 743 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 830 |
| XmnI | GAANNNNTTC | 1 cut(s) | 186 |