Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 79 - 154 | 4.3e-13 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 245 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 114, 218, 338 |
| AflII | CTTAAG | 1 cut(s) | 146 |
| AluBI | AGCT | 1 cut(s) | 374 |
| AluI | AGCT | 1 cut(s) | 374 |
| Alw26I | GTCTC | 1 cut(s) | 425 |
| ApeKI | GCWGC | 1 cut(s) | 378 |
| AseI | ATTAAT | 1 cut(s) | 234 |
| AsuHPI | GGTGA | 1 cut(s) | 97 |
| BbsI | GAAGAC | 2 cut(s) | 335, 516 |
| BbvI | GCAGC | 1 cut(s) | 390 |
| BccI | CCATC | 1 cut(s) | 261 |
| BcoDI | GTCTC | 1 cut(s) | 425 |
| BfaI | CTAG | 1 cut(s) | 428 |
| BfrI | CTTAAG | 1 cut(s) | 146 |
| BisI | GCNGC | 2 cut(s) | 246, 379 |
| BlsI | GCNGC | 2 cut(s) | 247, 380 |
| BmsI | GCATC | 2 cut(s) | 232, 427 |
| BpiI | GAAGAC | 2 cut(s) | 335, 516 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 143, 173 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 114, 218, 338 |
| Bse1I | ACTGG | 1 cut(s) | 343 |
| BseGI | GGATG | 3 cut(s) | 11, 247, 451 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 114, 218, 338 |
| BseNI | ACTGG | 1 cut(s) | 343 |
| BseRI | GAGGAG | 2 cut(s) | 201, 321 |
| BseXI | GCAGC | 1 cut(s) | 390 |
| BsgI | GTGCAG | 1 cut(s) | 336 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 114, 218, 338 |
| BsmAI | GTCTC | 1 cut(s) | 425 |
| BspACI | CCGC | 1 cut(s) | 245 |
| BspTI | CTTAAG | 1 cut(s) | 146 |
| BsrI | ACTGG | 1 cut(s) | 343 |
| Bst4CI | ACNGT | 1 cut(s) | 70 |
| BstAFI | CTTAAG | 1 cut(s) | 146 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 323 |
| BstC8I | GCNNGC | 2 cut(s) | 360, 376 |
| BstDEI | CTNAG | 1 cut(s) | 370 |
| BstEII | GGTNACC | 1 cut(s) | 85 |
| BstF5I | GGATG | 3 cut(s) | 11, 247, 451 |
| BstMAI | GTCTC | 1 cut(s) | 425 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 129, 323, 484 |
| BstNSI | RCATGY | 1 cut(s) | 362 |
| BstPI | GGTNACC | 1 cut(s) | 85 |
| BstV1I | GCAGC | 1 cut(s) | 390 |
| BstV2I | GAAGAC | 2 cut(s) | 335, 516 |
| BtsCI | GGATG | 3 cut(s) | 11, 247, 451 |
| Cac8I | GCNNGC | 2 cut(s) | 360, 376 |
| CviAII | CATG | 4 cut(s) | 114, 216, 359, 407 |
| CviJI | RGCY | 3 cut(s) | 37, 248, 374 |
| CviKI_1 | RGCY | 3 cut(s) | 37, 248, 374 |
| DdeI | CTNAG | 1 cut(s) | 370 |
| Eco91I | GGTNACC | 1 cut(s) | 85 |
| EcoO65I | GGTNACC | 1 cut(s) | 85 |
| FaeI | CATG | 4 cut(s) | 117, 219, 362, 410 |
| FatI | CATG | 4 cut(s) | 113, 215, 358, 406 |
| FauNDI | CATATG | 1 cut(s) | 309 |
| Fnu4HI | GCNGC | 2 cut(s) | 246, 379 |
| FokI | GGATG | 3 cut(s) | 18, 254, 458 |
| Fsp4HI | GCNGC | 2 cut(s) | 246, 379 |
| FspBI | CTAG | 1 cut(s) | 428 |
| GluI | GCNGC | 2 cut(s) | 246, 379 |
| Hin1II | CATG | 4 cut(s) | 117, 219, 362, 410 |
| HinfI | GANTC | 1 cut(s) | 27 |
| HphI | GGTGA | 1 cut(s) | 97 |
| Hpy166II | GTNNAC | 1 cut(s) | 181 |
| Hpy188I | TCNGA | 5 cut(s) | 22, 47, 65, 258, 453 |
| Hpy8I | GTNNAC | 1 cut(s) | 181 |
| HpyAV | CCTTC | 3 cut(s) | 17, 42, 118 |
| HpyCH4III | ACNGT | 1 cut(s) | 70 |
| HpyCH4V | TGCA | 3 cut(s) | 317, 378, 440 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 129, 323, 484 |
| HpyF3I | CTNAG | 1 cut(s) | 370 |
| Hsp92II | CATG | 4 cut(s) | 117, 219, 362, 410 |
| LpnPI | CCDG | 6 cut(s) | 288, 303, 324, 367, 428, 501 |
| Lsp1109I | GCAGC | 1 cut(s) | 390 |
| LweI | GCATC | 2 cut(s) | 232, 427 |
| MaeI | CTAG | 1 cut(s) | 428 |
| MaeIII | GTNAC | 1 cut(s) | 85 |
| MboII | GAAGA | 3 cut(s) | 241, 335, 521 |
| MlyI | GAGTC | 1 cut(s) | 36 |
| MnlI | CCTC | 4 cut(s) | 76, 115, 222, 342 |
| MseI | TTAA | 4 cut(s) | 147, 198, 234, 494 |
| MslI | CAYNNNNRTG | 1 cut(s) | 312 |
| MspCI | CTTAAG | 1 cut(s) | 146 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 129, 323, 484 |
| NdeI | CATATG | 1 cut(s) | 309 |
| NlaIII | CATG | 4 cut(s) | 117, 219, 362, 410 |
| NmuCI | GTSAC | 1 cut(s) | 85 |
| NspI | RCATGY | 1 cut(s) | 362 |
| PaeI | GCATGC | 1 cut(s) | 362 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 51 |
| PkrI | GCNGC | 2 cut(s) | 247, 380 |
| PleI | GAGTC | 1 cut(s) | 35 |
| PpsI | GAGTC | 1 cut(s) | 35 |
| PshBI | ATTAAT | 1 cut(s) | 234 |
| PspEI | GGTNACC | 1 cut(s) | 85 |
| RseI | CAYNNNNRTG | 1 cut(s) | 312 |
| SaqAI | TTAA | 4 cut(s) | 147, 198, 234, 494 |
| SatI | GCNGC | 2 cut(s) | 246, 379 |
| SchI | GAGTC | 1 cut(s) | 36 |
| SetI | ASST | 3 cut(s) | 87, 376, 516 |
| SfaNI | GCATC | 2 cut(s) | 232, 427 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 312 |
| SmlI | CTYRAG | 1 cut(s) | 146 |
| SmoI | CTYRAG | 1 cut(s) | 146 |
| SphI | GCATGC | 1 cut(s) | 362 |
| SsiI | CCGC | 1 cut(s) | 245 |
| SspMI | CTAG | 1 cut(s) | 428 |
| TaaI | ACNGT | 1 cut(s) | 70 |
| TaqI | TCGA | 1 cut(s) | 354 |
| TaqII | GACCGA | 1 cut(s) | 104 |
| TauI | GCSGC | 1 cut(s) | 248 |
| Tru1I | TTAA | 4 cut(s) | 147, 198, 234, 494 |
| Tru9I | TTAA | 4 cut(s) | 147, 198, 234, 494 |
| TseFI | GTSAC | 1 cut(s) | 85 |
| TseI | GCWGC | 1 cut(s) | 378 |
| Tsp45I | GTSAC | 1 cut(s) | 85 |
| TspDTI | ATGAA | 1 cut(s) | 522 |
| TspGWI | ACGGA | 1 cut(s) | 281 |
| Vha464I | CTTAAG | 1 cut(s) | 146 |
| VspI | ATTAAT | 1 cut(s) | 234 |
| XceI | RCATGY | 1 cut(s) | 362 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 222 |
| XspI | CTAG | 1 cut(s) | 428 |