Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 41 - 146 | 1.5e-15 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 112 |
| Acc36I | ACCTGC | 1 cut(s) | 260 |
| AccB1I | GGYRCC | 1 cut(s) | 131 |
| AccII | CGCG | 1 cut(s) | 214 |
| AclWI | GGATC | 1 cut(s) | 392 |
| AcoI | YGGCCR | 2 cut(s) | 379, 461 |
| AcuI | CTGAAG | 3 cut(s) | 134, 165, 276 |
| AcyI | GRCGYC | 1 cut(s) | 109 |
| AdeI | CACNNNGTG | 1 cut(s) | 57 |
| AfaI | GTAC | 1 cut(s) | 489 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 104, 351, 352, 388 |
| AgsI | TTSAA | 4 cut(s) | 8, 29, 311, 317 |
| AjnI | CCWGG | 1 cut(s) | 103 |
| AluBI | AGCT | 3 cut(s) | 143, 254, 417 |
| AluI | AGCT | 3 cut(s) | 143, 254, 417 |
| Alw26I | GTCTC | 1 cut(s) | 67 |
| AlwI | GGATC | 1 cut(s) | 392 |
| AoxI | GGCC | 3 cut(s) | 42, 379, 461 |
| AspLEI | GCGC | 1 cut(s) | 214 |
| BalI | TGGCCA | 1 cut(s) | 463 |
| BanI | GGYRCC | 1 cut(s) | 131 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 406, 438 |
| BccI | CCATC | 1 cut(s) | 122 |
| BciT130I | CCWGG | 1 cut(s) | 105 |
| BcoDI | GTCTC | 1 cut(s) | 67 |
| BfaI | CTAG | 1 cut(s) | 485 |
| BfuAI | ACCTGC | 1 cut(s) | 260 |
| BmcAI | AGTACT | 1 cut(s) | 489 |
| Bme1390I | CCNGG | 1 cut(s) | 105 |
| BmiI | GGNNCC | 2 cut(s) | 133, 193 |
| BmrFI | CCNGG | 1 cut(s) | 105 |
| BmsI | GCATC | 1 cut(s) | 212 |
| BoxI | GACNNNNGTC | 1 cut(s) | 79 |
| BpmI | CTGGAG | 1 cut(s) | 87 |
| BpuEI | CTTGAG | 1 cut(s) | 283 |
| BsaHI | GRCGYC | 1 cut(s) | 109 |
| BsaI | GGTCTC | 1 cut(s) | 67 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 104, 351, 352, 388 |
| BseBI | CCWGG | 1 cut(s) | 105 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 104, 351, 352, 388 |
| Bsh1236I | CGCG | 1 cut(s) | 214 |
| BshFI | GGCC | 3 cut(s) | 44, 381, 463 |
| BshNI | GGYRCC | 1 cut(s) | 131 |
| BsiSI | CCGG | 1 cut(s) | 382 |
| BslFI | GGGAC | 1 cut(s) | 206 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 104, 351, 352, 388 |
| BsmAI | GTCTC | 1 cut(s) | 67 |
| BsmFI | GGGAC | 1 cut(s) | 206 |
| BsnI | GGCC | 3 cut(s) | 44, 381, 463 |
| Bso31I | GGTCTC | 1 cut(s) | 67 |
| Bsp143I | GATC | 1 cut(s) | 384 |
| BspANI | GGCC | 3 cut(s) | 44, 381, 463 |
| BspFNI | CGCG | 1 cut(s) | 214 |
| BspLI | GGNNCC | 2 cut(s) | 133, 193 |
| BspMI | ACCTGC | 1 cut(s) | 260 |
| BspPI | GGATC | 1 cut(s) | 392 |
| BspT107I | GGYRCC | 1 cut(s) | 131 |
| BspTNI | GGTCTC | 1 cut(s) | 67 |
| BssMI | GATC | 1 cut(s) | 384 |
| BssNI | GRCGYC | 1 cut(s) | 109 |
| Bst2UI | CCWGG | 1 cut(s) | 105 |
| BstACI | GRCGYC | 1 cut(s) | 109 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 209, 481 |
| BstC8I | GCNNGC | 1 cut(s) | 282 |
| BstFNI | CGCG | 1 cut(s) | 214 |
| BstHHI | GCGC | 1 cut(s) | 214 |
| BstKTI | GATC | 1 cut(s) | 387 |
| BstMAI | GTCTC | 1 cut(s) | 67 |
| BstMBI | GATC | 1 cut(s) | 384 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 140, 209, 236, 266, 481, 490 |
| BstNI | CCWGG | 1 cut(s) | 105 |
| BstNSI | RCATGY | 1 cut(s) | 18 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 79 |
| BstSCI | CCNGG | 1 cut(s) | 103 |
| BstUI | CGCG | 1 cut(s) | 214 |
| BstX2I | RGATCY | 1 cut(s) | 384 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 471 |
| BstYI | RGATCY | 1 cut(s) | 384 |
| BsuRI | GGCC | 3 cut(s) | 44, 381, 463 |
| BtsI | GCAGTG | 1 cut(s) | 98 |
| BtsIMutI | CAGTG | 1 cut(s) | 98 |
| BveI | ACCTGC | 1 cut(s) | 260 |
| Cac8I | GCNNGC | 1 cut(s) | 282 |
| CfoI | GCGC | 1 cut(s) | 214 |
| CseI | GACGC | 2 cut(s) | 203, 219 |
| Csp6I | GTAC | 1 cut(s) | 488 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 440, 475 |
| CviAII | CATG | 5 cut(s) | 15, 46, 218, 247, 436 |
| CviJI | RGCY | 9 cut(s) | 44, 143, 239, 254, 260, 297, 381, 417, 463 |
| CviKI_1 | RGCY | 9 cut(s) | 44, 143, 239, 254, 260, 297, 381, 417, 463 |
| CviQI | GTAC | 1 cut(s) | 488 |
| DpnI | GATC | 1 cut(s) | 386 |
| DpnII | GATC | 1 cut(s) | 384 |
| DraIII | CACNNNGTG | 1 cut(s) | 57 |
| EaeI | YGGCCR | 2 cut(s) | 379, 461 |
| Eco31I | GGTCTC | 1 cut(s) | 67 |
| Eco57I | CTGAAG | 3 cut(s) | 134, 165, 276 |
| EcoRII | CCWGG | 1 cut(s) | 103 |
| FaeI | CATG | 5 cut(s) | 18, 49, 221, 250, 439 |
| FaiI | YATR | 9 cut(s) | 16, 47, 140, 219, 248, 342, 408, 437, 443 |
| FaqI | GGGAC | 1 cut(s) | 206 |
| FatI | CATG | 5 cut(s) | 14, 45, 217, 246, 435 |
| FspBI | CTAG | 1 cut(s) | 485 |
| GlaI | GCGC | 1 cut(s) | 213 |
| GsuI | CTGGAG | 1 cut(s) | 87 |
| HaeIII | GGCC | 3 cut(s) | 44, 381, 463 |
| HapII | CCGG | 1 cut(s) | 382 |
| HgaI | GACGC | 2 cut(s) | 203, 219 |
| HhaI | GCGC | 1 cut(s) | 214 |
| Hin1I | GRCGYC | 1 cut(s) | 109 |
| Hin1II | CATG | 5 cut(s) | 18, 49, 221, 250, 439 |
| Hin6I | GCGC | 1 cut(s) | 212 |
| HinP1I | GCGC | 1 cut(s) | 212 |
| HinfI | GANTC | 1 cut(s) | 21 |
| HpaII | CCGG | 1 cut(s) | 382 |
| Hpy166II | GTNNAC | 1 cut(s) | 98 |
| Hpy188I | TCNGA | 2 cut(s) | 114, 373 |
| Hpy8I | GTNNAC | 1 cut(s) | 98 |
| HpyAV | CCTTC | 2 cut(s) | 148, 396 |
| HpyCH4IV | ACGT | 1 cut(s) | 109 |
| HpyCH4V | TGCA | 2 cut(s) | 284, 399 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 140, 209, 236, 266, 481, 490 |
| HpySE526I | ACGT | 1 cut(s) | 109 |
| Hsp92I | GRCGYC | 1 cut(s) | 109 |
| Hsp92II | CATG | 5 cut(s) | 18, 49, 221, 250, 439 |
| HspAI | GCGC | 1 cut(s) | 212 |
| Kzo9I | GATC | 1 cut(s) | 384 |
| LmnI | GCTCC | 1 cut(s) | 11 |
| LweI | GCATC | 1 cut(s) | 212 |
| MaeI | CTAG | 1 cut(s) | 485 |
| MaeII | ACGT | 1 cut(s) | 109 |
| MaeIII | GTNAC | 1 cut(s) | 179 |
| MalI | GATC | 1 cut(s) | 386 |
| MboI | GATC | 1 cut(s) | 384 |
| MboII | GAAGA | 4 cut(s) | 41, 127, 404, 414 |
| MflI | RGATCY | 1 cut(s) | 384 |
| MlsI | TGGCCA | 1 cut(s) | 463 |
| MluCI | AATT | 1 cut(s) | 427 |
| MluNI | TGGCCA | 1 cut(s) | 463 |
| MmeI | TCCRAC | 1 cut(s) | 282 |
| MnlI | CCTC | 3 cut(s) | 111, 235, 298 |
| Mox20I | TGGCCA | 1 cut(s) | 463 |
| MscI | TGGCCA | 1 cut(s) | 463 |
| Msp20I | TGGCCA | 1 cut(s) | 463 |
| MspI | CCGG | 1 cut(s) | 382 |
| MspR9I | CCNGG | 1 cut(s) | 105 |
| MvaI | CCWGG | 1 cut(s) | 105 |
| MvnI | CGCG | 1 cut(s) | 214 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 140, 209, 236, 266, 481, 490 |
| NdeII | GATC | 1 cut(s) | 384 |
| NlaIII | CATG | 5 cut(s) | 18, 49, 221, 250, 439 |
| NlaIV | GGNNCC | 2 cut(s) | 133, 193 |
| NmuCI | GTSAC | 1 cut(s) | 179 |
| NspI | RCATGY | 1 cut(s) | 18 |
| PfeI | GAWTC | 1 cut(s) | 21 |
| PfoI | TCCNGGA | 1 cut(s) | 103 |
| PshAI | GACNNNNGTC | 1 cut(s) | 79 |
| Psp6I | CCWGG | 1 cut(s) | 103 |
| PspGI | CCWGG | 1 cut(s) | 103 |
| PspN4I | GGNNCC | 2 cut(s) | 133, 193 |
| PsuI | RGATCY | 1 cut(s) | 384 |
| RsaI | GTAC | 1 cut(s) | 489 |
| RsaNI | GTAC | 1 cut(s) | 488 |
| Sau3AI | GATC | 1 cut(s) | 384 |
| ScaI | AGTACT | 1 cut(s) | 489 |
| ScrFI | CCNGG | 1 cut(s) | 105 |
| SfaNI | GCATC | 1 cut(s) | 212 |
| SmlI | CTYRAG | 1 cut(s) | 262 |
| SmoI | CTYRAG | 1 cut(s) | 262 |
| Sse9I | AATT | 1 cut(s) | 427 |
| SspI | AATATT | 1 cut(s) | 124 |
| SspMI | CTAG | 1 cut(s) | 485 |
| StyD4I | CCNGG | 1 cut(s) | 103 |
| TaiI | ACGT | 1 cut(s) | 112 |
| TasI | AATT | 1 cut(s) | 427 |
| TatI | WGTACW | 1 cut(s) | 487 |
| TfiI | GAWTC | 1 cut(s) | 21 |
| TscAI | CASTG | 1 cut(s) | 98 |
| TseFI | GTSAC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 1 cut(s) | 179 |
| TspRI | CASTG | 1 cut(s) | 98 |
| XceI | RCATGY | 1 cut(s) | 18 |
| XspI | CTAG | 1 cut(s) | 485 |
| ZraI | GACGTC | 1 cut(s) | 110 |
| ZrmI | AGTACT | 1 cut(s) | 489 |