Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 532 |
| AciI | CCGC | 2 cut(s) | 40, 1209 |
| AclWI | GGATC | 1 cut(s) | 403 |
| AcoI | YGGCCR | 1 cut(s) | 693 |
| AcsI | RAATTY | 6 cut(s) | 286, 465, 666, 681, 990, 1128 |
| AcuI | CTGAAG | 1 cut(s) | 1020 |
| AcyI | GRCGYC | 1 cut(s) | 752 |
| AfaI | GTAC | 5 cut(s) | 28, 194, 367, 472, 483 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1154, 1199 |
| AgsI | TTSAA | 4 cut(s) | 856, 928, 1135, 1165 |
| AjnI | CCWGG | 2 cut(s) | 168, 200 |
| AluBI | AGCT | 7 cut(s) | 149, 305, 416, 500, 690, 1040, 1184 |
| AluI | AGCT | 7 cut(s) | 149, 305, 416, 500, 690, 1040, 1184 |
| Alw21I | GWGCWC | 3 cut(s) | 10, 307, 462 |
| Alw26I | GTCTC | 3 cut(s) | 180, 534, 800 |
| AlwI | GGATC | 1 cut(s) | 403 |
| Aor13HI | TCCGGA | 1 cut(s) | 532 |
| AoxI | GGCC | 3 cut(s) | 380, 693, 1206 |
| ApoI | RAATTY | 6 cut(s) | 286, 465, 666, 681, 990, 1128 |
| AsuHPI | GGTGA | 1 cut(s) | 1180 |
| BanII | GRGCYC | 1 cut(s) | 307 |
| Bbv12I | GWGCWC | 3 cut(s) | 10, 307, 462 |
| BccI | CCATC | 1 cut(s) | 1172 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 449, 483 |
| BciT130I | CCWGG | 2 cut(s) | 170, 202 |
| BclI | TGATCA | 3 cut(s) | 432, 901, 964 |
| BcoDI | GTCTC | 3 cut(s) | 180, 534, 800 |
| BfaI | CTAG | 9 cut(s) | 282, 363, 525, 687, 770, 843, 876, 1122, 1154 |
| BisI | GCNGC | 1 cut(s) | 1209 |
| BlpI | GCTNAGC | 1 cut(s) | 141 |
| BlsI | GCNGC | 1 cut(s) | 1210 |
| BmcAI | AGTACT | 1 cut(s) | 367 |
| Bme1390I | CCNGG | 2 cut(s) | 170, 202 |
| BmrFI | CCNGG | 2 cut(s) | 170, 202 |
| BmsI | GCATC | 4 cut(s) | 481, 626, 901, 1070 |
| BpmI | CTGGAG | 1 cut(s) | 191 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 141 |
| BpuEI | CTTGAG | 1 cut(s) | 538 |
| BsaBI | GATNNNNATC | 1 cut(s) | 900 |
| BsaHI | GRCGYC | 1 cut(s) | 752 |
| BsaI | GGTCTC | 1 cut(s) | 534 |
| BsaJI | CCNNGG | 2 cut(s) | 81, 696 |
| BsaWI | WCCGGW | 1 cut(s) | 532 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1154, 1199 |
| Bse1I | ACTGG | 1 cut(s) | 314 |
| Bse8I | GATNNNNATC | 1 cut(s) | 900 |
| BseAI | TCCGGA | 1 cut(s) | 532 |
| BseBI | CCWGG | 2 cut(s) | 170, 202 |
| BseDI | CCNNGG | 2 cut(s) | 81, 696 |
| BseGI | GGATG | 8 cut(s) | 70, 412, 435, 460, 541, 916, 1248, 1269 |
| BseJI | GATNNNNATC | 1 cut(s) | 900 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1154, 1199 |
| BseMII | CTCAG | 2 cut(s) | 1064, 1250 |
| BseNI | ACTGG | 1 cut(s) | 314 |
| BseRI | GAGGAG | 2 cut(s) | 280, 1140 |
| BshFI | GGCC | 3 cut(s) | 382, 695, 1208 |
| BsiHKAI | GWGCWC | 3 cut(s) | 10, 307, 462 |
| BsiSI | CCGG | 1 cut(s) | 533 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1154, 1199 |
| BsmAI | GTCTC | 3 cut(s) | 180, 534, 800 |
| BsmI | GAATGC | 1 cut(s) | 235 |
| BsnI | GGCC | 3 cut(s) | 382, 695, 1208 |
| Bso31I | GGTCTC | 1 cut(s) | 534 |
| Bsp1286I | GDGCHC | 3 cut(s) | 10, 307, 462 |
| Bsp13I | TCCGGA | 1 cut(s) | 532 |
| Bsp1407I | TGTACA | 2 cut(s) | 192, 481 |
| Bsp143I | GATC | 4 cut(s) | 395, 432, 901, 964 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 141 |
| BspACI | CCGC | 2 cut(s) | 40, 1209 |
| BspANI | GGCC | 3 cut(s) | 382, 695, 1208 |
| BspCNI | CTCAG | 2 cut(s) | 1065, 1249 |
| BspEI | TCCGGA | 1 cut(s) | 532 |
| BspPI | GGATC | 1 cut(s) | 403 |
| BspTNI | GGTCTC | 1 cut(s) | 534 |
| BsrGI | TGTACA | 2 cut(s) | 192, 481 |
| BsrI | ACTGG | 1 cut(s) | 314 |
| BssECI | CCNNGG | 2 cut(s) | 81, 696 |
| BssMI | GATC | 4 cut(s) | 395, 432, 901, 964 |
| BssNI | GRCGYC | 1 cut(s) | 752 |
| BssT1I | CCWWGG | 2 cut(s) | 81, 696 |
| Bst2UI | CCWGG | 2 cut(s) | 170, 202 |
| Bst4CI | ACNGT | 2 cut(s) | 580, 958 |
| Bst6I | CTCTTC | 1 cut(s) | 656 |
| BstACI | GRCGYC | 1 cut(s) | 752 |
| BstAUI | TGTACA | 2 cut(s) | 192, 481 |
| BstC8I | GCNNGC | 1 cut(s) | 147 |
| BstDEI | CTNAG | 8 cut(s) | 117, 141, 412, 739, 756, 887, 1073, 1236 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1152 |
| BstF5I | GGATG | 8 cut(s) | 70, 412, 435, 460, 541, 916, 1248, 1269 |
| BstKTI | GATC | 4 cut(s) | 398, 435, 904, 967 |
| BstMAI | GTCTC | 3 cut(s) | 180, 534, 800 |
| BstMBI | GATC | 4 cut(s) | 395, 432, 901, 964 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 146, 506, 1058 |
| BstNI | CCWGG | 2 cut(s) | 170, 202 |
| BstNSI | RCATGY | 2 cut(s) | 245, 488 |
| BstSCI | CCNGG | 2 cut(s) | 168, 200 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 88 |
| BsuRI | GGCC | 3 cut(s) | 382, 695, 1208 |
| BtsCI | GGATG | 8 cut(s) | 70, 412, 435, 460, 541, 916, 1248, 1269 |
| BtsIMutI | CAGTG | 2 cut(s) | 307, 963 |
| Cac8I | GCNNGC | 1 cut(s) | 147 |
| CseI | GACGC | 1 cut(s) | 741 |
| Csp6I | GTAC | 5 cut(s) | 27, 193, 366, 471, 482 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 372, 407 |
| CviAII | CATG | 8 cut(s) | 77, 242, 296, 485, 599, 708, 1057, 1115 |
| CviQI | GTAC | 5 cut(s) | 27, 193, 366, 471, 482 |
| DdeI | CTNAG | 8 cut(s) | 117, 141, 412, 739, 756, 887, 1073, 1236 |
| DpnI | GATC | 4 cut(s) | 397, 434, 903, 966 |
| DpnII | GATC | 4 cut(s) | 395, 432, 901, 964 |
| EaeI | YGGCCR | 1 cut(s) | 693 |
| Eam1104I | CTCTTC | 1 cut(s) | 656 |
| EarI | CTCTTC | 1 cut(s) | 656 |
| Ecl136II | GAGCTC | 1 cut(s) | 305 |
| Eco130I | CCWWGG | 2 cut(s) | 81, 696 |
| Eco24I | GRGCYC | 1 cut(s) | 307 |
| Eco31I | GGTCTC | 1 cut(s) | 534 |
| Eco32I | GATATC | 1 cut(s) | 1048 |
| Eco53kI | GAGCTC | 1 cut(s) | 305 |
| Eco57I | CTGAAG | 1 cut(s) | 1020 |
| EcoICRI | GAGCTC | 1 cut(s) | 305 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1152 |
| EcoRII | CCWGG | 2 cut(s) | 168, 200 |
| EcoRV | GATATC | 1 cut(s) | 1048 |
| EcoT14I | CCWWGG | 2 cut(s) | 81, 696 |
| EcoT22I | ATGCAT | 2 cut(s) | 619, 709 |
| EcoT38I | GRGCYC | 1 cut(s) | 307 |
| ErhI | CCWWGG | 2 cut(s) | 81, 696 |
| FaeI | CATG | 8 cut(s) | 80, 245, 299, 488, 602, 711, 1060, 1118 |
| FatI | CATG | 8 cut(s) | 76, 241, 295, 484, 598, 707, 1056, 1114 |
| FauNDI | CATATG | 1 cut(s) | 341 |
| FbaI | TGATCA | 3 cut(s) | 432, 901, 964 |
| Fnu4HI | GCNGC | 1 cut(s) | 1209 |
| FokI | GGATG | 7 cut(s) | 77, 419, 422, 467, 548, 923, 1255 |
| FriOI | GRGCYC | 1 cut(s) | 307 |
| Fsp4HI | GCNGC | 1 cut(s) | 1209 |
| FspBI | CTAG | 9 cut(s) | 282, 363, 525, 687, 770, 843, 876, 1122, 1154 |
| GluI | GCNGC | 1 cut(s) | 1209 |
| GsuI | CTGGAG | 1 cut(s) | 191 |
| HaeIII | GGCC | 3 cut(s) | 382, 695, 1208 |
| HapII | CCGG | 1 cut(s) | 533 |
| HgaI | GACGC | 1 cut(s) | 741 |
| Hin1I | GRCGYC | 1 cut(s) | 752 |
| Hin1II | CATG | 8 cut(s) | 80, 245, 299, 488, 602, 711, 1060, 1118 |
| HindIII | AAGCTT | 1 cut(s) | 147 |
| HinfI | GANTC | 7 cut(s) | 173, 358, 773, 896, 928, 1218, 1232 |
| HpaII | CCGG | 1 cut(s) | 533 |
| HphI | GGTGA | 1 cut(s) | 1180 |
| Hpy166II | GTNNAC | 1 cut(s) | 576 |
| Hpy188I | TCNGA | 3 cut(s) | 349, 901, 1070 |
| Hpy188III | TCNNGA | 3 cut(s) | 533, 825, 1222 |
| Hpy8I | GTNNAC | 1 cut(s) | 576 |
| HpyAV | CCTTC | 4 cut(s) | 261, 293, 642, 1159 |
| HpyCH4III | ACNGT | 2 cut(s) | 580, 958 |
| HpyCH4V | TGCA | 9 cut(s) | 233, 295, 488, 494, 590, 617, 707, 795, 1090 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 146, 506, 1058 |
| HpyF3I | CTNAG | 8 cut(s) | 117, 141, 412, 739, 756, 887, 1073, 1236 |
| Hsp92I | GRCGYC | 1 cut(s) | 752 |
| Hsp92II | CATG | 8 cut(s) | 80, 245, 299, 488, 602, 711, 1060, 1118 |
| Kpn2I | TCCGGA | 1 cut(s) | 532 |
| Ksp22I | TGATCA | 3 cut(s) | 432, 901, 964 |
| Kzo9I | GATC | 4 cut(s) | 395, 432, 901, 964 |
| LmnI | GCTCC | 3 cut(s) | 302, 1181, 1253 |
| LweI | GCATC | 4 cut(s) | 481, 626, 901, 1070 |
| MaeI | CTAG | 9 cut(s) | 282, 363, 525, 687, 770, 843, 876, 1122, 1154 |
| MalI | GATC | 4 cut(s) | 397, 434, 903, 966 |
| MboI | GATC | 4 cut(s) | 395, 432, 901, 964 |
| MboII | GAAGA | 6 cut(s) | 120, 248, 574, 612, 673, 724 |
| MfeI | CAATTG | 2 cut(s) | 188, 386 |
| MhlI | GDGCHC | 3 cut(s) | 10, 307, 462 |
| MlyI | GAGTC | 1 cut(s) | 182 |
| MnlI | CCTC | 7 cut(s) | 25, 86, 147, 258, 450, 1158, 1161 |
| Mph1103I | ATGCAT | 2 cut(s) | 619, 709 |
| MroI | TCCGGA | 1 cut(s) | 532 |
| MseI | TTAA | 3 cut(s) | 123, 545, 702 |
| MslI | CAYNNNNRTG | 2 cut(s) | 489, 909 |
| MspI | CCGG | 1 cut(s) | 533 |
| MspR9I | CCNGG | 2 cut(s) | 170, 202 |
| MunI | CAATTG | 2 cut(s) | 188, 386 |
| Mva1269I | GAATGC | 1 cut(s) | 235 |
| MvaI | CCWGG | 2 cut(s) | 170, 202 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 146, 506, 1058 |
| NdeI | CATATG | 1 cut(s) | 341 |
| NdeII | GATC | 4 cut(s) | 395, 432, 901, 964 |
| NlaIII | CATG | 8 cut(s) | 80, 245, 299, 488, 602, 711, 1060, 1118 |
| NmeAIII | GCCGAG | 1 cut(s) | 671 |
| NsiI | ATGCAT | 2 cut(s) | 619, 709 |
| NspI | RCATGY | 2 cut(s) | 245, 488 |
| PctI | GAATGC | 1 cut(s) | 235 |
| PfeI | GAWTC | 6 cut(s) | 358, 773, 896, 928, 1218, 1232 |
| PkrI | GCNGC | 1 cut(s) | 1210 |
| PleI | GAGTC | 1 cut(s) | 181 |
| PpsI | GAGTC | 1 cut(s) | 181 |
| Psp124BI | GAGCTC | 1 cut(s) | 307 |
| Psp6I | CCWGG | 2 cut(s) | 168, 200 |
| PspGI | CCWGG | 2 cut(s) | 168, 200 |
| RsaI | GTAC | 5 cut(s) | 28, 194, 367, 472, 483 |
| RsaNI | GTAC | 5 cut(s) | 27, 193, 366, 471, 482 |
| RseI | CAYNNNNRTG | 2 cut(s) | 489, 909 |
| SacI | GAGCTC | 1 cut(s) | 307 |
| SaqAI | TTAA | 3 cut(s) | 123, 545, 702 |
| SatI | GCNGC | 1 cut(s) | 1209 |
| Sau3AI | GATC | 4 cut(s) | 395, 432, 901, 964 |
| ScaI | AGTACT | 1 cut(s) | 367 |
| SchI | GAGTC | 1 cut(s) | 182 |
| ScrFI | CCNGG | 2 cut(s) | 170, 202 |
| SduI | GDGCHC | 3 cut(s) | 10, 307, 462 |
| SfaNI | GCATC | 4 cut(s) | 481, 626, 901, 1070 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 489, 909 |
| SmlI | CTYRAG | 1 cut(s) | 517 |
| SmoI | CTYRAG | 1 cut(s) | 517 |
| SsiI | CCGC | 2 cut(s) | 40, 1209 |
| SspI | AATATT | 1 cut(s) | 1174 |
| SspMI | CTAG | 9 cut(s) | 282, 363, 525, 687, 770, 843, 876, 1122, 1154 |
| SstI | GAGCTC | 1 cut(s) | 307 |
| StyD4I | CCNGG | 2 cut(s) | 168, 200 |
| StyI | CCWWGG | 2 cut(s) | 81, 696 |
| TaaI | ACNGT | 2 cut(s) | 580, 958 |
| TaqI | TCGA | 1 cut(s) | 131 |
| TatI | WGTACW | 4 cut(s) | 26, 192, 365, 481 |
| TauI | GCSGC | 1 cut(s) | 1211 |
| TfiI | GAWTC | 6 cut(s) | 358, 773, 896, 928, 1218, 1232 |
| Tru1I | TTAA | 3 cut(s) | 123, 545, 702 |
| Tru9I | TTAA | 3 cut(s) | 123, 545, 702 |
| TscAI | CASTG | 2 cut(s) | 314, 963 |
| TspDTI | ATGAA | 4 cut(s) | 210, 312, 806, 1072 |
| TspRI | CASTG | 2 cut(s) | 314, 963 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1152 |
| XapI | RAATTY | 6 cut(s) | 286, 465, 666, 681, 990, 1128 |
| XceI | RCATGY | 2 cut(s) | 245, 488 |
| XspI | CTAG | 9 cut(s) | 282, 363, 525, 687, 770, 843, 876, 1122, 1154 |
| ZrmI | AGTACT | 1 cut(s) | 367 |
| Zsp2I | ATGCAT | 2 cut(s) | 619, 709 |