Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 183 - 226 | 8.4e-08 | Zinc knuckle |
| Exo_endo_phos | PF03372 | 479 - 682 | 2e-10 | Endonuclease/Exonuclease/phosphatase family |
| zf-RVT | PF13966 | 935 - 1003 | 2.6e-12 | zinc-binding in reverse transcriptase |
| RVT_3 | PF13456 | 1105 - 1227 | 2.4e-23 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 2405 |
| Acc36I | ACCTGC | 3 cut(s) | 894, 2733, 3452 |
| Acc65I | GGTACC | 1 cut(s) | 2833 |
| AccB1I | GGYRCC | 2 cut(s) | 2494, 2833 |
| AccI | GTMKAC | 1 cut(s) | 3301 |
| AccII | CGCG | 2 cut(s) | 862, 864 |
| AccIII | TCCGGA | 3 cut(s) | 358, 396, 1111 |
| AcoI | YGGCCR | 3 cut(s) | 36, 451, 599 |
| AcsI | RAATTY | 5 cut(s) | 149, 246, 2108, 2649, 3523 |
| AcuI | CTGAAG | 4 cut(s) | 299, 1606, 2565, 2757 |
| AcvI | CACGTG | 1 cut(s) | 3296 |
| AcyI | GRCGYC | 1 cut(s) | 2402 |
| AdeI | CACNNNGTG | 1 cut(s) | 2999 |
| AfeI | AGCGCT | 1 cut(s) | 1035 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 204, 460, 518, 608, 806, 2278, 2537, 3840 |
| AjiI | CACGTC | 1 cut(s) | 1336 |
| AjnI | CCWGG | 1 cut(s) | 1233 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1483, 1515 |
| Alw21I | GWGCWC | 2 cut(s) | 846, 2830 |
| Alw26I | GTCTC | 6 cut(s) | 908, 1779, 2409, 3095, 3293, 3710 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 341, 2780 |
| Ama87I | CYCGRG | 3 cut(s) | 801, 2785, 3777 |
| Aor13HI | TCCGGA | 3 cut(s) | 358, 396, 1111 |
| Aor51HI | AGCGCT | 1 cut(s) | 1035 |
| ApeKI | GCWGC | 5 cut(s) | 2215, 2218, 2709, 2894, 3185 |
| ApoI | RAATTY | 5 cut(s) | 149, 246, 2108, 2649, 3523 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1074, 1174, 1511 |
| Asp718I | GGTACC | 1 cut(s) | 2833 |
| AspLEI | GCGC | 5 cut(s) | 331, 864, 1036, 2085, 2436 |
| AsuC2I | CCSGG | 4 cut(s) | 200, 802, 803, 3835 |
| AsuII | TTCGAA | 1 cut(s) | 1265 |
| AsuNHI | GCTAGC | 1 cut(s) | 899 |
| AvaI | CYCGRG | 3 cut(s) | 801, 2785, 3777 |
| AvaII | GGWCC | 6 cut(s) | 1617, 1766, 1907, 2611, 2677, 3204 |
| AxyI | CCTNAGG | 1 cut(s) | 2841 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 361, 394 |
| BalI | TGGCCA | 1 cut(s) | 38 |
| BamHI | GGATCC | 2 cut(s) | 393, 2527 |
| BanI | GGYRCC | 2 cut(s) | 2494, 2833 |
| BanII | GRGCYC | 1 cut(s) | 2543 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2714, 2746 |
| BbrPI | CACGTG | 1 cut(s) | 3296 |
| BbsI | GAAGAC | 3 cut(s) | 629, 689, 1665 |
| Bbv12I | GWGCWC | 2 cut(s) | 846, 2830 |
| BbvI | GCAGC | 5 cut(s) | 2227, 2230, 2696, 2881, 3172 |
| BceAI | ACGGC | 3 cut(s) | 47, 438, 1479 |
| BciT130I | CCWGG | 1 cut(s) | 1235 |
| BciVI | GTATCC | 1 cut(s) | 1109 |
| BcnI | CCSGG | 4 cut(s) | 200, 802, 803, 3835 |
| BcoDI | GTCTC | 6 cut(s) | 908, 1779, 2409, 3095, 3293, 3710 |
| BfmI | CTRYAG | 3 cut(s) | 591, 1467, 1991 |
| BfoI | RGCGCY | 2 cut(s) | 332, 1037 |
| BfuAI | ACCTGC | 3 cut(s) | 894, 2733, 3452 |
| BfuI | GTATCC | 1 cut(s) | 1109 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 326 |
| BglII | AGATCT | 3 cut(s) | 274, 764, 1797 |
| BisI | GCNGC | 6 cut(s) | 865, 2216, 2219, 2710, 2895, 3186 |
| BlpI | GCTNAGC | 2 cut(s) | 2916, 3846 |
| BlsI | GCNGC | 6 cut(s) | 866, 2217, 2220, 2711, 2896, 3187 |
| BmcAI | AGTACT | 3 cut(s) | 448, 1984, 3176 |
| Bme1390I | CCNGG | 5 cut(s) | 200, 802, 803, 1235, 3835 |
| Bme18I | GGWCC | 6 cut(s) | 1617, 1766, 1907, 2611, 2677, 3204 |
| BmeT110I | CYCGRG | 3 cut(s) | 801, 2785, 3777 |
| BmgBI | CACGTC | 1 cut(s) | 1336 |
| BmiI | GGNNCC | 7 cut(s) | 395, 1382, 1970, 2191, 2496, 2529, 2835 |
| BmrFI | CCNGG | 5 cut(s) | 200, 802, 803, 1235, 3835 |
| BmrI | ACTGGG | 1 cut(s) | 3849 |
| BmsI | GCATC | 6 cut(s) | 654, 880, 1387, 2015, 2523, 3795 |
| BmtI | GCTAGC | 1 cut(s) | 903 |
| BmuI | ACTGGG | 1 cut(s) | 3849 |
| BpiI | GAAGAC | 3 cut(s) | 629, 689, 1665 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1089, 2132, 2829, 3218 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 2916, 3846 |
| Bpu14I | TTCGAA | 1 cut(s) | 1265 |
| BpuEI | CTTGAG | 4 cut(s) | 644, 1351, 1822, 3290 |
| BpuMI | CCSGG | 4 cut(s) | 200, 802, 803, 3835 |
| BsaAI | YACGTR | 2 cut(s) | 497, 3296 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3555 |
| BsaHI | GRCGYC | 1 cut(s) | 2402 |
| BsaJI | CCNNGG | 8 cut(s) | 198, 302, 800, 801, 1385, 1769, 1972, 2489 |
| BsaWI | WCCGGW | 4 cut(s) | 358, 396, 910, 1111 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 3375, 3405, 3522, 3552 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 204, 460, 518, 608, 806, 2278, 2537, 3840 |
| Bse118I | RCCGGY | 2 cut(s) | 893, 2679 |
| Bse1I | ACTGG | 2 cut(s) | 454, 3855 |
| Bse21I | CCTNAGG | 1 cut(s) | 2841 |
| Bse3DI | GCAATG | 1 cut(s) | 2995 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3555 |
| BseAI | TCCGGA | 3 cut(s) | 358, 396, 1111 |
| BseBI | CCWGG | 1 cut(s) | 1235 |
| BseDI | CCNNGG | 8 cut(s) | 198, 302, 800, 801, 1385, 1769, 1972, 2489 |
| BseJI | GATNNNNATC | 1 cut(s) | 3555 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 204, 460, 518, 608, 806, 2278, 2537, 3840 |
| BseMI | GCAATG | 1 cut(s) | 2995 |
| BseMII | CTCAG | 8 cut(s) | 568, 1290, 1332, 2146, 2843, 2930, 3232, 3837 |
| BseNI | ACTGG | 2 cut(s) | 454, 3855 |
| BseRI | GAGGAG | 3 cut(s) | 1324, 2135, 2378 |
| BseXI | GCAGC | 5 cut(s) | 2227, 2230, 2696, 2881, 3172 |
| BseYI | CCCAGC | 2 cut(s) | 667, 2002 |
| Bsh1236I | CGCG | 2 cut(s) | 862, 864 |
| BshNI | GGYRCC | 2 cut(s) | 2494, 2833 |
| BsiHKAI | GWGCWC | 2 cut(s) | 846, 2830 |
| BsiHKCI | CYCGRG | 3 cut(s) | 801, 2785, 3777 |
| BslFI | GGGAC | 1 cut(s) | 3781 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 204, 460, 518, 608, 806, 2278, 2537, 3840 |
| BsmAI | GTCTC | 6 cut(s) | 908, 1779, 2409, 3095, 3293, 3710 |
| BsmBI | CGTCTC | 2 cut(s) | 908, 2409 |
| BsmFI | GGGAC | 1 cut(s) | 3781 |
| BsmI | GAATGC | 1 cut(s) | 1511 |
| BsoBI | CYCGRG | 3 cut(s) | 801, 2785, 3777 |
| Bsp119I | TTCGAA | 1 cut(s) | 1265 |
| Bsp1286I | GDGCHC | 3 cut(s) | 846, 2543, 2830 |
| Bsp13I | TCCGGA | 3 cut(s) | 358, 396, 1111 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 2916, 3846 |
| Bsp19I | CCATGG | 1 cut(s) | 2489 |
| BspCNI | CTCAG | 8 cut(s) | 567, 1291, 1331, 2145, 2842, 2929, 3231, 3838 |
| BspEI | TCCGGA | 3 cut(s) | 358, 396, 1111 |
| BspFNI | CGCG | 2 cut(s) | 862, 864 |
| BspHI | TCATGA | 1 cut(s) | 726 |
| BspLI | GGNNCC | 7 cut(s) | 395, 1382, 1970, 2191, 2496, 2529, 2835 |
| BspMI | ACCTGC | 3 cut(s) | 894, 2733, 3452 |
| BspOI | GCTAGC | 1 cut(s) | 903 |
| BspT104I | TTCGAA | 1 cut(s) | 1265 |
| BspT107I | GGYRCC | 2 cut(s) | 2494, 2833 |
| BsrDI | GCAATG | 1 cut(s) | 2995 |
| BsrFI | RCCGGY | 2 cut(s) | 893, 2679 |
| BsrI | ACTGG | 2 cut(s) | 454, 3855 |
| BssAI | RCCGGY | 2 cut(s) | 893, 2679 |
| BssECI | CCNNGG | 8 cut(s) | 198, 302, 800, 801, 1385, 1769, 1972, 2489 |
| BssNI | GRCGYC | 1 cut(s) | 2402 |
| BssT1I | CCWWGG | 5 cut(s) | 302, 1385, 1769, 1972, 2489 |
| Bst2UI | CCWGG | 1 cut(s) | 1235 |
| Bst6I | CTCTTC | 8 cut(s) | 128, 275, 284, 1301, 2084, 2717, 3257, 3568 |
| BstACI | GRCGYC | 1 cut(s) | 2402 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2999, 3019 |
| BstBAI | YACGTR | 2 cut(s) | 497, 3296 |
| BstBI | TTCGAA | 1 cut(s) | 1265 |
| BstC8I | GCNNGC | 8 cut(s) | 36, 333, 417, 468, 901, 939, 2769, 3673 |
| BstDSI | CCRYGG | 1 cut(s) | 2489 |
| BstEII | GGTNACC | 2 cut(s) | 906, 1414 |
| BstFNI | CGCG | 2 cut(s) | 862, 864 |
| BstH2I | RGCGCY | 2 cut(s) | 332, 1037 |
| BstHHI | GCGC | 5 cut(s) | 331, 864, 1036, 2085, 2436 |
| BstMAI | GTCTC | 6 cut(s) | 908, 1779, 2409, 3095, 3293, 3710 |
| BstNI | CCWGG | 1 cut(s) | 1235 |
| BstNSI | RCATGY | 2 cut(s) | 941, 3536 |
| BstPI | GGTNACC | 2 cut(s) | 906, 1414 |
| BstSCI | CCNGG | 5 cut(s) | 198, 800, 801, 1233, 3833 |
| BstSFI | CTRYAG | 3 cut(s) | 591, 1467, 1991 |
| BstUI | CGCG | 2 cut(s) | 862, 864 |
| BstV1I | GCAGC | 5 cut(s) | 2227, 2230, 2696, 2881, 3172 |
| BstV2I | GAAGAC | 3 cut(s) | 629, 689, 1665 |
| BstX2I | RGATCY | 7 cut(s) | 274, 355, 393, 764, 1797, 2527, 3751 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3248 |
| BstYI | RGATCY | 7 cut(s) | 274, 355, 393, 764, 1797, 2527, 3751 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2841 |
| BsuI | GTATCC | 1 cut(s) | 1109 |
| BtgI | CCRYGG | 1 cut(s) | 2489 |
| BtrI | CACGTC | 1 cut(s) | 1336 |
| BtsI | GCAGTG | 2 cut(s) | 444, 3352 |
| BtsIMutI | CAGTG | 5 cut(s) | 444, 738, 1630, 3352, 3546 |
| BveI | ACCTGC | 3 cut(s) | 894, 2733, 3452 |
| Cac8I | GCNNGC | 8 cut(s) | 36, 333, 417, 468, 901, 939, 2769, 3673 |
| CaiI | CAGNNNCTG | 2 cut(s) | 341, 2780 |
| CciI | TCATGA | 1 cut(s) | 726 |
| CfoI | GCGC | 5 cut(s) | 331, 864, 1036, 2085, 2436 |
| Cfr10I | RCCGGY | 2 cut(s) | 893, 2679 |
| Cfr9I | CCCGGG | 1 cut(s) | 801 |
| CseI | GACGC | 1 cut(s) | 623 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3636, 3671 |
| DraI | TTTAAA | 1 cut(s) | 2980 |
| DraIII | CACNNNGTG | 1 cut(s) | 2999 |
| EaeI | YGGCCR | 3 cut(s) | 36, 451, 599 |
| Eam1104I | CTCTTC | 8 cut(s) | 128, 275, 284, 1301, 2084, 2717, 3257, 3568 |
| EarI | CTCTTC | 8 cut(s) | 128, 275, 284, 1301, 2084, 2717, 3257, 3568 |
| EciI | GGCGGA | 1 cut(s) | 892 |
| Eco130I | CCWWGG | 5 cut(s) | 302, 1385, 1769, 1972, 2489 |
| Eco147I | AGGCCT | 2 cut(s) | 320, 3409 |
| Eco24I | GRGCYC | 1 cut(s) | 2543 |
| Eco47I | GGWCC | 6 cut(s) | 1617, 1766, 1907, 2611, 2677, 3204 |
| Eco47III | AGCGCT | 1 cut(s) | 1035 |
| Eco57I | CTGAAG | 4 cut(s) | 299, 1606, 2565, 2757 |
| Eco72I | CACGTG | 1 cut(s) | 3296 |
| Eco81I | CCTNAGG | 1 cut(s) | 2841 |
| Eco88I | CYCGRG | 3 cut(s) | 801, 2785, 3777 |
| Eco91I | GGTNACC | 2 cut(s) | 906, 1414 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1617, 1907, 2611 |
| EcoO65I | GGTNACC | 2 cut(s) | 906, 1414 |
| EcoRI | GAATTC | 1 cut(s) | 246 |
| EcoRII | CCWGG | 1 cut(s) | 1233 |
| EcoT14I | CCWWGG | 5 cut(s) | 302, 1385, 1769, 1972, 2489 |
| EcoT22I | ATGCAT | 3 cut(s) | 939, 1583, 2856 |
| EcoT38I | GRGCYC | 1 cut(s) | 2543 |
| ErhI | CCWWGG | 5 cut(s) | 302, 1385, 1769, 1972, 2489 |
| Esp3I | CGTCTC | 2 cut(s) | 908, 2409 |
| FaqI | GGGAC | 1 cut(s) | 3781 |
| FauI | CCCGC | 3 cut(s) | 984, 1159, 3680 |
| FauNDI | CATATG | 2 cut(s) | 2850, 3438 |
| FblI | GTMKAC | 1 cut(s) | 3301 |
| Fnu4HI | GCNGC | 6 cut(s) | 865, 2216, 2219, 2710, 2895, 3186 |
| FriOI | GRGCYC | 1 cut(s) | 2543 |
| Fsp4HI | GCNGC | 6 cut(s) | 865, 2216, 2219, 2710, 2895, 3186 |
| GlaI | GCGC | 5 cut(s) | 330, 863, 1035, 2084, 2435 |
| GluI | GCNGC | 6 cut(s) | 865, 2216, 2219, 2710, 2895, 3186 |
| GsaI | CCCAGC | 2 cut(s) | 671, 2006 |
| HaeII | RGCGCY | 2 cut(s) | 332, 1037 |
| HgaI | GACGC | 1 cut(s) | 623 |
| HhaI | GCGC | 5 cut(s) | 331, 864, 1036, 2085, 2436 |
| Hin1I | GRCGYC | 1 cut(s) | 2402 |
| Hin6I | GCGC | 5 cut(s) | 329, 862, 1034, 2083, 2434 |
| HinP1I | GCGC | 5 cut(s) | 329, 862, 1034, 2083, 2434 |
| HindIII | AAGCTT | 1 cut(s) | 2769 |
| Hpy166II | GTNNAC | 6 cut(s) | 255, 410, 611, 2816, 3207, 3302 |
| Hpy8I | GTNNAC | 6 cut(s) | 255, 410, 611, 2816, 3207, 3302 |
| Hpy99I | CGWCG | 2 cut(s) | 1337, 2404 |
| HpyCH4IV | ACGT | 7 cut(s) | 308, 496, 613, 1335, 2306, 2402, 3295 |
| HpySE526I | ACGT | 7 cut(s) | 308, 496, 613, 1335, 2306, 2402, 3295 |
| Hsp92I | GRCGYC | 1 cut(s) | 2402 |
| HspAI | GCGC | 5 cut(s) | 329, 862, 1034, 2083, 2434 |
| Kpn2I | TCCGGA | 3 cut(s) | 358, 396, 1111 |
| KpnI | GGTACC | 1 cut(s) | 2837 |
| LmnI | GCTCC | 3 cut(s) | 841, 2925, 3324 |
| Lsp1109I | GCAGC | 5 cut(s) | 2227, 2230, 2696, 2881, 3172 |
| LweI | GCATC | 6 cut(s) | 654, 880, 1387, 2015, 2523, 3795 |
| MaeII | ACGT | 7 cut(s) | 308, 496, 613, 1335, 2306, 2402, 3295 |
| MfeI | CAATTG | 2 cut(s) | 471, 1200 |
| MflI | RGATCY | 7 cut(s) | 274, 355, 393, 764, 1797, 2527, 3751 |
| MhlI | GDGCHC | 3 cut(s) | 846, 2543, 2830 |
| MlsI | TGGCCA | 1 cut(s) | 38 |
| MluNI | TGGCCA | 1 cut(s) | 38 |
| MlyI | GAGTC | 7 cut(s) | 232, 1310, 1639, 2045, 2398, 2777, 3297 |
| MmeI | TCCRAC | 8 cut(s) | 126, 701, 759, 1481, 1941, 2019, 2739, 3675 |
| Mox20I | TGGCCA | 1 cut(s) | 38 |
| Mph1103I | ATGCAT | 3 cut(s) | 939, 1583, 2856 |
| MroI | TCCGGA | 3 cut(s) | 358, 396, 1111 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1074, 1174, 1511 |
| MscI | TGGCCA | 1 cut(s) | 38 |
| MseI | TTAA | 9 cut(s) | 960, 1404, 1724, 1791, 2619, 2979, 3119, 3612, 3816 |
| MslI | CAYNNNNRTG | 3 cut(s) | 731, 1638, 2853 |
| Msp20I | TGGCCA | 1 cut(s) | 38 |
| MspA1I | CMGCKG | 1 cut(s) | 415 |
| MspR9I | CCNGG | 5 cut(s) | 200, 802, 803, 1235, 3835 |
| MunI | CAATTG | 2 cut(s) | 471, 1200 |
| Mva1269I | GAATGC | 1 cut(s) | 1511 |
| MvaI | CCWGG | 1 cut(s) | 1235 |
| MvnI | CGCG | 2 cut(s) | 862, 864 |
| NciI | CCSGG | 4 cut(s) | 200, 802, 803, 3835 |
| NcoI | CCATGG | 1 cut(s) | 2489 |
| NdeI | CATATG | 2 cut(s) | 2850, 3438 |
| NheI | GCTAGC | 1 cut(s) | 899 |
| NlaIV | GGNNCC | 7 cut(s) | 395, 1382, 1970, 2191, 2496, 2529, 2835 |
| NmuCI | GTSAC | 6 cut(s) | 671, 906, 1313, 2014, 2249, 3236 |
| NsiI | ATGCAT | 3 cut(s) | 939, 1583, 2856 |
| NspI | RCATGY | 2 cut(s) | 941, 3536 |
| NspV | TTCGAA | 1 cut(s) | 1265 |
| PaeI | GCATGC | 1 cut(s) | 941 |
| PaeR7I | CTCGAG | 1 cut(s) | 2785 |
| PagI | TCATGA | 1 cut(s) | 726 |
| PceI | AGGCCT | 2 cut(s) | 320, 3409 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2352 |
| PctI | GAATGC | 1 cut(s) | 1511 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1074, 1174, 1511 |
| PfeI | GAWTC | 7 cut(s) | 172, 181, 944, 1534, 1680, 2059, 2065 |
| PkrI | GCNGC | 6 cut(s) | 866, 2217, 2220, 2711, 2896, 3187 |
| PleI | GAGTC | 7 cut(s) | 231, 1310, 1638, 2044, 2397, 2777, 3297 |
| PmaCI | CACGTG | 1 cut(s) | 3296 |
| PmlI | CACGTG | 1 cut(s) | 3296 |
| PpsI | GAGTC | 7 cut(s) | 231, 1310, 1638, 2044, 2397, 2777, 3297 |
| Ppu21I | YACGTR | 2 cut(s) | 497, 3296 |
| PpuMI | RGGWCCY | 3 cut(s) | 1617, 1907, 2611 |
| Psp5II | RGGWCCY | 3 cut(s) | 1617, 1907, 2611 |
| Psp6I | CCWGG | 1 cut(s) | 1233 |
| PspCI | CACGTG | 1 cut(s) | 3296 |
| PspEI | GGTNACC | 2 cut(s) | 906, 1414 |
| PspFI | CCCAGC | 2 cut(s) | 667, 2002 |
| PspGI | CCWGG | 1 cut(s) | 1233 |
| PspN4I | GGNNCC | 7 cut(s) | 395, 1382, 1970, 2191, 2496, 2529, 2835 |
| PspPPI | RGGWCCY | 3 cut(s) | 1617, 1907, 2611 |
| PspXI | VCTCGAGB | 1 cut(s) | 2785 |
| PstNI | CAGNNNCTG | 2 cut(s) | 341, 2780 |
| PsuI | RGATCY | 7 cut(s) | 274, 355, 393, 764, 1797, 2527, 3751 |
| RseI | CAYNNNNRTG | 3 cut(s) | 731, 1638, 2853 |
| SaqAI | TTAA | 9 cut(s) | 960, 1404, 1724, 1791, 2619, 2979, 3119, 3612, 3816 |
| SatI | GCNGC | 6 cut(s) | 865, 2216, 2219, 2710, 2895, 3186 |
| ScaI | AGTACT | 3 cut(s) | 448, 1984, 3176 |
| SchI | GAGTC | 7 cut(s) | 232, 1310, 1639, 2045, 2398, 2777, 3297 |
| ScrFI | CCNGG | 5 cut(s) | 200, 802, 803, 1235, 3835 |
| SduI | GDGCHC | 3 cut(s) | 846, 2543, 2830 |
| SfaNI | GCATC | 6 cut(s) | 654, 880, 1387, 2015, 2523, 3795 |
| SfcI | CTRYAG | 3 cut(s) | 591, 1467, 1991 |
| Sfr274I | CTCGAG | 1 cut(s) | 2785 |
| SfuI | TTCGAA | 1 cut(s) | 1265 |
| SinI | GGWCC | 6 cut(s) | 1617, 1766, 1907, 2611, 2677, 3204 |
| SlaI | CTCGAG | 1 cut(s) | 2785 |
| SmaI | CCCGGG | 1 cut(s) | 803 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 731, 1638, 2853 |
| SmlI | CTYRAG | 5 cut(s) | 623, 1366, 1801, 2785, 3305 |
| SmoI | CTYRAG | 5 cut(s) | 623, 1366, 1801, 2785, 3305 |
| SphI | GCATGC | 1 cut(s) | 941 |
| SseBI | AGGCCT | 2 cut(s) | 320, 3409 |
| SspI | AATATT | 1 cut(s) | 386 |
| StuI | AGGCCT | 2 cut(s) | 320, 3409 |
| StyD4I | CCNGG | 5 cut(s) | 198, 800, 801, 1233, 3833 |
| StyI | CCWWGG | 5 cut(s) | 302, 1385, 1769, 1972, 2489 |
| TaiI | ACGT | 7 cut(s) | 311, 499, 616, 1338, 2309, 2405, 3298 |
| TaqI | TCGA | 9 cut(s) | 226, 369, 586, 1265, 1332, 2377, 2407, 2786, 3507 |
| TatI | WGTACW | 4 cut(s) | 446, 1982, 3174, 3225 |
| TauI | GCSGC | 1 cut(s) | 867 |
| TfiI | GAWTC | 7 cut(s) | 172, 181, 944, 1534, 1680, 2059, 2065 |
| Tru1I | TTAA | 9 cut(s) | 960, 1404, 1724, 1791, 2619, 2979, 3119, 3612, 3816 |
| Tru9I | TTAA | 9 cut(s) | 960, 1404, 1724, 1791, 2619, 2979, 3119, 3612, 3816 |
| TscAI | CASTG | 5 cut(s) | 444, 738, 1630, 3352, 3553 |
| TseFI | GTSAC | 6 cut(s) | 671, 906, 1313, 2014, 2249, 3236 |
| TseI | GCWGC | 5 cut(s) | 2215, 2218, 2709, 2894, 3185 |
| Tsp45I | GTSAC | 6 cut(s) | 671, 906, 1313, 2014, 2249, 3236 |
| TspDTI | ATGAA | 7 cut(s) | 182, 689, 1490, 1494, 2340, 3425, 3843 |
| TspGWI | ACGGA | 2 cut(s) | 1025, 3163 |
| TspMI | CCCGGG | 1 cut(s) | 801 |
| TspRI | CASTG | 5 cut(s) | 444, 738, 1630, 3352, 3553 |
| VpaK11BI | GGWCC | 6 cut(s) | 1617, 1766, 1907, 2611, 2677, 3204 |
| XapI | RAATTY | 5 cut(s) | 149, 246, 2108, 2649, 3523 |
| XceI | RCATGY | 2 cut(s) | 941, 3536 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 46 |
| XhoI | CTCGAG | 1 cut(s) | 2785 |
| XmaI | CCCGGG | 1 cut(s) | 801 |
| XmiI | GTMKAC | 1 cut(s) | 3301 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1074, 1174, 1511 |
| ZraI | GACGTC | 1 cut(s) | 2403 |
| ZrmI | AGTACT | 3 cut(s) | 448, 1984, 3176 |
| Zsp2I | ATGCAT | 3 cut(s) | 939, 1583, 2856 |